deletions made

.ipynb_checkpoints/Error_to_Image-checkpoint.ipynb

@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "code",
-   "execution_count": 3,
+   "execution_count": 2,
    "id": "dbef8759",
    "metadata": {
     "id": "dbef8759"
@@ -28,7 +28,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 2,
+   "execution_count": 3,
    "id": "9ed20f84",
    "metadata": {
     "id": "9ed20f84"
@@ -218,7 +218,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 9,
+   "execution_count": 8,
    "id": "bb11dcd0",
    "metadata": {},
    "outputs": [],
@@ -266,7 +266,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 10,
+   "execution_count": 9,
    "id": "c01fda28",
    "metadata": {},
    "outputs": [],
@@ -335,7 +335,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 11,
+   "execution_count": 10,
    "id": "ffa858e8",
    "metadata": {},
    "outputs": [
@@ -346,8 +346,8 @@
      "traceback": [
       "\u001b[1;31m---------------------------------------------------------------------------\u001b[0m",
       "\u001b[1;31mValueError\u001b[0m                                Traceback (most recent call last)",
-      "\u001b[1;32m~\\AppData\\Local\\Temp/ipykernel_23384/384786850.py\u001b[0m in \u001b[0;36m<module>\u001b[1;34m\u001b[0m\n\u001b[1;32m----> 1\u001b[1;33m \u001b[0mencode_dict\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mencoding\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0merror\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0morig_image\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mencoder\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mimages\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;36m2\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mplot\u001b[0m\u001b[1;33m=\u001b[0m\u001b[1;32mFalse\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m",
-      "\u001b[1;32m~\\AppData\\Local\\Temp/ipykernel_23384/3253315524.py\u001b[0m in \u001b[0;36mencoder\u001b[1;34m(images, i, plot)\u001b[0m\n\u001b[0;32m     21\u001b[0m                                  \u001b[1;31m#update on throughout\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m     22\u001b[0m     \u001b[1;31m#new_error[1:-1,1:-1] = np.reshape(error[1:-1,1:-1],(510, 638))\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m---> 23\u001b[1;33m     \u001b[0mnew_error\u001b[0m\u001b[1;33m[\u001b[0m\u001b[1;36m1\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m-\u001b[0m\u001b[1;36m1\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;36m1\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m-\u001b[0m\u001b[1;36m1\u001b[0m\u001b[1;33m]\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0merror\u001b[0m\u001b[1;33m[\u001b[0m\u001b[1;36m1\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m-\u001b[0m\u001b[1;36m1\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;36m1\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m-\u001b[0m\u001b[1;36m1\u001b[0m\u001b[1;33m]\u001b[0m  \u001b[1;31m#Set the inside of the updating matrix to be the same as the\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m     24\u001b[0m                                                \u001b[1;31m#error matrix retreived from predicting\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m     25\u001b[0m     \u001b[0mkeep\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mnew_error\u001b[0m\u001b[1;33m[\u001b[0m\u001b[1;36m0\u001b[0m\u001b[1;33m,\u001b[0m\u001b[1;36m0\u001b[0m\u001b[1;33m]\u001b[0m                      \u001b[1;31m#The top left entry stays the same\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
+      "\u001b[1;32m~\\AppData\\Local\\Temp/ipykernel_2620/384786850.py\u001b[0m in \u001b[0;36m<module>\u001b[1;34m\u001b[0m\n\u001b[1;32m----> 1\u001b[1;33m \u001b[0mencode_dict\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mencoding\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0merror\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0morig_image\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mencoder\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mimages\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;36m2\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mplot\u001b[0m\u001b[1;33m=\u001b[0m\u001b[1;32mFalse\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m",
+      "\u001b[1;32m~\\AppData\\Local\\Temp/ipykernel_2620/3253315524.py\u001b[0m in \u001b[0;36mencoder\u001b[1;34m(images, i, plot)\u001b[0m\n\u001b[0;32m     21\u001b[0m                                  \u001b[1;31m#update on throughout\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m     22\u001b[0m     \u001b[1;31m#new_error[1:-1,1:-1] = np.reshape(error[1:-1,1:-1],(510, 638))\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m---> 23\u001b[1;33m     \u001b[0mnew_error\u001b[0m\u001b[1;33m[\u001b[0m\u001b[1;36m1\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m-\u001b[0m\u001b[1;36m1\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;36m1\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m-\u001b[0m\u001b[1;36m1\u001b[0m\u001b[1;33m]\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0merror\u001b[0m\u001b[1;33m[\u001b[0m\u001b[1;36m1\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m-\u001b[0m\u001b[1;36m1\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;36m1\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m-\u001b[0m\u001b[1;36m1\u001b[0m\u001b[1;33m]\u001b[0m  \u001b[1;31m#Set the inside of the updating matrix to be the same as the\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m     24\u001b[0m                                                \u001b[1;31m#error matrix retreived from predicting\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m     25\u001b[0m     \u001b[0mkeep\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mnew_error\u001b[0m\u001b[1;33m[\u001b[0m\u001b[1;36m0\u001b[0m\u001b[1;33m,\u001b[0m\u001b[1;36m0\u001b[0m\u001b[1;33m]\u001b[0m                      \u001b[1;31m#The top left entry stays the same\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
       "\u001b[1;31mValueError\u001b[0m: could not broadcast input array from shape (508,636) into shape (510,638)"
      ]
     }
@@ -456,12 +456,25 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 137,
+   "execution_count": 13,
    "id": "30b1c87e",
    "metadata": {},
-   "outputs": [],
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "6.7830123821108295\n"
+     ]
+    }
+   ],
    "source": [
     "def entropy_func(images):\n",
+    "    \"\"\"\n",
+    "    Computes the entropy for all pictures (tiff files) in the images list.\n",
+    "    This gives an idea of how many bits it would take on average to encode the\n",
+    "    given image. The output is a list of entropies, one per image.\n",
+    "    \"\"\"\n",
     "    entr = []\n",
     "    for i in range(len(images)):\n",
     "        prediction, diff, im, err, A = predict(images, i)\n",
@@ -470,7 +483,8 @@
     "        entr.append(sp.stats.entropy(counts))\n",
     "    return entr\n",
     "\n",
-    "e = entropy_func(images)"
+    "e = entropy_func(images)\n",
+    "print(np.mean(e))"
    ]
   },
   {

Encoding_decoding.ipynb

@@ -432,7 +432,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.1"
+   "version": "3.8.11"
   }
  },
  "nbformat": 4,