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image-compression
Commit fe7fc54e authored by Bryce Hepner's avatar Bryce Hepner
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Found the PNG problem, got rid of faulty code

parent b0e5d8f8
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Showing with 641 additions and 292 deletions
FullTester.ipynb
View file @ fe7fc54e
......@@ -15,16 +15,16 @@
},
{
"cell_type": "code",
"execution_count": 6,
"execution_count": 2,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"262\n",
"262\n",
"0.40572646255697487\n"
"264\n",
"263\n",
"0.40415934529931374\n"
]
}
],
......@@ -56,7 +56,7 @@
},
{
"cell_type": "code",
"execution_count": 55,
"execution_count": 3,
"metadata": {},
"outputs": [],
"source": [
......@@ -70,19 +70,19 @@
},
{
"cell_type": "code",
"execution_count": 63,
"execution_count": 4,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"0.3684967703155846\n",
"0.3767853274384346\n",
"0.4979190885485795\n",
"0.3972905625173536\n",
"0.41933998568991976\n",
"0.40572646255697487\n",
"0.4043799328975815\n",
"0.40415934529931374\n",
"0.4028230157727312\n",
"0.39809636267662574\n",
"0.750887133437684\n"
]
......@@ -101,35 +101,75 @@
},
{
"cell_type": "code",
"execution_count": 64,
"execution_count": 8,
"metadata": {},
"outputs": [
{
"ename": "error",
"evalue": "required argument is not an integer",
"output_type": "error",
"traceback": [
"\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
"\u001b[0;31merror\u001b[0m Traceback (most recent call last)",
"\u001b[1;32m/home/bryce/git/master/FullTester.ipynb Cell 5'\u001b[0m in \u001b[0;36m<cell line: 2>\u001b[0;34m()\u001b[0m\n\u001b[1;32m <a href='vscode-notebook-cell:/home/bryce/git/master/FullTester.ipynb#ch0000004?line=5'>6</a>\u001b[0m \u001b[39mwith\u001b[39;00m \u001b[39mopen\u001b[39m(newnamesforlater[i][:\u001b[39m-\u001b[39m\u001b[39m4\u001b[39m] \u001b[39m+\u001b[39m \u001b[39m\"\u001b[39m\u001b[39m.png\u001b[39m\u001b[39m\"\u001b[39m, \u001b[39m'\u001b[39m\u001b[39mwb\u001b[39m\u001b[39m'\u001b[39m) \u001b[39mas\u001b[39;00m f:\n\u001b[1;32m <a href='vscode-notebook-cell:/home/bryce/git/master/FullTester.ipynb#ch0000004?line=6'>7</a>\u001b[0m writer \u001b[39m=\u001b[39m png\u001b[39m.\u001b[39mWriter(newimage\u001b[39m.\u001b[39mshape[\u001b[39m1\u001b[39m], newimage\u001b[39m.\u001b[39mshape[\u001b[39m0\u001b[39m], greyscale\u001b[39m=\u001b[39m\u001b[39mTrue\u001b[39;00m, bitdepth\u001b[39m=\u001b[39m\u001b[39m16\u001b[39m)\n\u001b[0;32m----> <a href='vscode-notebook-cell:/home/bryce/git/master/FullTester.ipynb#ch0000004?line=7'>8</a>\u001b[0m writer\u001b[39m.\u001b[39;49mwrite(f, newimage)\n\u001b[1;32m <a href='vscode-notebook-cell:/home/bryce/git/master/FullTester.ipynb#ch0000004?line=8'>9</a>\u001b[0m pngsizes\u001b[39m.\u001b[39mappend(os\u001b[39m.\u001b[39mpath\u001b[39m.\u001b[39mgetsize(newnamesforlater[i][:\u001b[39m-\u001b[39m\u001b[39m4\u001b[39m] \u001b[39m+\u001b[39m \u001b[39m\"\u001b[39m\u001b[39m.png\u001b[39m\u001b[39m\"\u001b[39m))\n\u001b[1;32m <a href='vscode-notebook-cell:/home/bryce/git/master/FullTester.ipynb#ch0000004?line=9'>10</a>\u001b[0m \u001b[39mprint\u001b[39m(np\u001b[39m.\u001b[39msum(pngsizes)\u001b[39m/\u001b[39mnp\u001b[39m.\u001b[39msum(file_sizes_old))\n",
"File \u001b[0;32m~/.local/lib/python3.8/site-packages/png.py:668\u001b[0m, in \u001b[0;36mWriter.write\u001b[0;34m(self, outfile, rows)\u001b[0m\n\u001b[1;32m <a href='file:///home/bryce/.local/lib/python3.8/site-packages/png.py?line=664'>665</a>\u001b[0m a \u001b[39m=\u001b[39m array(fmt, itertools\u001b[39m.\u001b[39mchain(\u001b[39m*\u001b[39mcheck_rows(rows)))\n\u001b[1;32m <a href='file:///home/bryce/.local/lib/python3.8/site-packages/png.py?line=665'>666</a>\u001b[0m \u001b[39mreturn\u001b[39;00m \u001b[39mself\u001b[39m\u001b[39m.\u001b[39mwrite_array(outfile, a)\n\u001b[0;32m--> <a href='file:///home/bryce/.local/lib/python3.8/site-packages/png.py?line=667'>668</a>\u001b[0m nrows \u001b[39m=\u001b[39m \u001b[39mself\u001b[39;49m\u001b[39m.\u001b[39;49mwrite_passes(outfile, check_rows(rows))\n\u001b[1;32m <a href='file:///home/bryce/.local/lib/python3.8/site-packages/png.py?line=668'>669</a>\u001b[0m \u001b[39mif\u001b[39;00m nrows \u001b[39m!=\u001b[39m \u001b[39mself\u001b[39m\u001b[39m.\u001b[39mheight:\n\u001b[1;32m <a href='file:///home/bryce/.local/lib/python3.8/site-packages/png.py?line=669'>670</a>\u001b[0m \u001b[39mraise\u001b[39;00m ProtocolError(\n\u001b[1;32m <a href='file:///home/bryce/.local/lib/python3.8/site-packages/png.py?line=670'>671</a>\u001b[0m \u001b[39m\"\u001b[39m\u001b[39mrows supplied (\u001b[39m\u001b[39m%d\u001b[39;00m\u001b[39m) does not match height (\u001b[39m\u001b[39m%d\u001b[39;00m\u001b[39m)\u001b[39m\u001b[39m\"\u001b[39m \u001b[39m%\u001b[39m\n\u001b[1;32m <a href='file:///home/bryce/.local/lib/python3.8/site-packages/png.py?line=671'>672</a>\u001b[0m (nrows, \u001b[39mself\u001b[39m\u001b[39m.\u001b[39mheight))\n",
"File \u001b[0;32m~/.local/lib/python3.8/site-packages/png.py:703\u001b[0m, in \u001b[0;36mWriter.write_passes\u001b[0;34m(self, outfile, rows)\u001b[0m\n\u001b[1;32m <a href='file:///home/bryce/.local/lib/python3.8/site-packages/png.py?line=699'>700</a>\u001b[0m \u001b[39melif\u001b[39;00m \u001b[39mself\u001b[39m\u001b[39m.\u001b[39mbitdepth \u001b[39m==\u001b[39m \u001b[39m16\u001b[39m:\n\u001b[1;32m <a href='file:///home/bryce/.local/lib/python3.8/site-packages/png.py?line=700'>701</a>\u001b[0m rows \u001b[39m=\u001b[39m unpack_rows(rows)\n\u001b[0;32m--> <a href='file:///home/bryce/.local/lib/python3.8/site-packages/png.py?line=702'>703</a>\u001b[0m \u001b[39mreturn\u001b[39;00m \u001b[39mself\u001b[39;49m\u001b[39m.\u001b[39;49mwrite_packed(outfile, rows)\n",
"File \u001b[0;32m~/.local/lib/python3.8/site-packages/png.py:738\u001b[0m, in \u001b[0;36mWriter.write_packed\u001b[0;34m(self, outfile, rows)\u001b[0m\n\u001b[1;32m <a href='file:///home/bryce/.local/lib/python3.8/site-packages/png.py?line=734'>735</a>\u001b[0m \u001b[39m# raise i scope out of the for loop. set to -1, because the for loop\u001b[39;00m\n\u001b[1;32m <a href='file:///home/bryce/.local/lib/python3.8/site-packages/png.py?line=735'>736</a>\u001b[0m \u001b[39m# sets i to 0 on the first pass\u001b[39;00m\n\u001b[1;32m <a href='file:///home/bryce/.local/lib/python3.8/site-packages/png.py?line=736'>737</a>\u001b[0m i \u001b[39m=\u001b[39m \u001b[39m-\u001b[39m\u001b[39m1\u001b[39m\n\u001b[0;32m--> <a href='file:///home/bryce/.local/lib/python3.8/site-packages/png.py?line=737'>738</a>\u001b[0m \u001b[39mfor\u001b[39;00m i, row \u001b[39min\u001b[39;00m \u001b[39menumerate\u001b[39m(rows):\n\u001b[1;32m <a href='file:///home/bryce/.local/lib/python3.8/site-packages/png.py?line=738'>739</a>\u001b[0m \u001b[39m# Add \"None\" filter type.\u001b[39;00m\n\u001b[1;32m <a href='file:///home/bryce/.local/lib/python3.8/site-packages/png.py?line=739'>740</a>\u001b[0m \u001b[39m# Currently, it's essential that this filter type be used\u001b[39;00m\n\u001b[1;32m <a href='file:///home/bryce/.local/lib/python3.8/site-packages/png.py?line=740'>741</a>\u001b[0m \u001b[39m# for every scanline as\u001b[39;00m\n\u001b[1;32m <a href='file:///home/bryce/.local/lib/python3.8/site-packages/png.py?line=741'>742</a>\u001b[0m \u001b[39m# we do not mark the first row of a reduced pass image;\u001b[39;00m\n\u001b[1;32m <a href='file:///home/bryce/.local/lib/python3.8/site-packages/png.py?line=742'>743</a>\u001b[0m \u001b[39m# that means we could accidentally compute\u001b[39;00m\n\u001b[1;32m <a href='file:///home/bryce/.local/lib/python3.8/site-packages/png.py?line=743'>744</a>\u001b[0m \u001b[39m# the wrong filtered scanline if we used\u001b[39;00m\n\u001b[1;32m <a href='file:///home/bryce/.local/lib/python3.8/site-packages/png.py?line=744'>745</a>\u001b[0m \u001b[39m# \"up\", \"average\", or \"paeth\" on such a line.\u001b[39;00m\n\u001b[1;32m <a href='file:///home/bryce/.local/lib/python3.8/site-packages/png.py?line=745'>746</a>\u001b[0m data\u001b[39m.\u001b[39mappend(\u001b[39m0\u001b[39m)\n\u001b[1;32m <a href='file:///home/bryce/.local/lib/python3.8/site-packages/png.py?line=746'>747</a>\u001b[0m data\u001b[39m.\u001b[39mextend(row)\n",
"File \u001b[0;32m~/.local/lib/python3.8/site-packages/png.py:1001\u001b[0m, in \u001b[0;36munpack_rows\u001b[0;34m(rows)\u001b[0m\n\u001b[1;32m <a href='file:///home/bryce/.local/lib/python3.8/site-packages/png.py?line=998'>999</a>\u001b[0m \u001b[39mfor\u001b[39;00m row \u001b[39min\u001b[39;00m rows:\n\u001b[1;32m <a href='file:///home/bryce/.local/lib/python3.8/site-packages/png.py?line=999'>1000</a>\u001b[0m fmt \u001b[39m=\u001b[39m \u001b[39m'\u001b[39m\u001b[39m!\u001b[39m\u001b[39m%d\u001b[39;00m\u001b[39mH\u001b[39m\u001b[39m'\u001b[39m \u001b[39m%\u001b[39m \u001b[39mlen\u001b[39m(row)\n\u001b[0;32m-> <a href='file:///home/bryce/.local/lib/python3.8/site-packages/png.py?line=1000'>1001</a>\u001b[0m \u001b[39myield\u001b[39;00m \u001b[39mbytearray\u001b[39m(struct\u001b[39m.\u001b[39;49mpack(fmt, \u001b[39m*\u001b[39;49mrow))\n",
"\u001b[0;31merror\u001b[0m: required argument is not an integer"
]
}
],
"source": [
"pngsizes = []\n",
"for i, filename in enumerate(images):\n",
" newimage = Image.open(filename)\n",
" newimage = np.array(newimage)\n",
" newimage = newimage[1:]\n",
" with open(newnamesforlater[i][:-4] + \".png\", 'wb') as f:\n",
" writer = png.Writer(newimage.shape[1], newimage.shape[0], greyscale=True, bitdepth=16)\n",
" writer.write(f, newimage)\n",
" pngsizes.append(os.path.getsize(newnamesforlater[i][:-4] + \".png\"))\n",
"print(np.sum(pngsizes)/np.sum(file_sizes_old))\n"
]
},
{
"cell_type": "code",
"execution_count": 12,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"0.6120739575336334\n"
"[[-190.26562 -177.99805 -177.38672 ... -166.95898 -156.64062 -145.72461]\n",
" [-175.46094 -163.56055 -183.07617 ... -169.2207 -167.58789 -154.14062]\n",
" [-171.45898 -179.1582 -174.68164 ... -173.10547 -157.51758 -156.97461]\n",
" ...\n",
" [-143.66992 -127.69531 -143.9043 ... 156.90625 170.79102 165.55469]\n",
" [-139.97656 -134.71875 -152.26953 ... 169.49805 158.11914 172.49023]\n",
" [-145.33984 -127.59375 -134.07227 ... 182.88672 169.80273 183.32812]]\n",
"0.3016682254469224\n"
]
}
],
"source": [
"pngsizes = []\n",
"for i, filename in enumerate(images):\n",
" # newimage = Image.open(filename)\n",
" # newimage = np.array(newimage)\n",
"for i in range(19,20):\n",
" newimage = Image.open(images[i])\n",
" print(np.array(newimage))\n",
" newimage = (np.array(newimage) - np.min(newimage)).astype(int)\n",
" # newimage = newimage[1:]\n",
" # with open(newnamesforlater[i][:-4] + \".png\", 'wb') as f:\n",
" # writer = png.Writer(newimage.shape[1], newimage.shape[0], greyscale=True, bitdepth=16)\n",
" # writer.write(f, newimage)\n",
" # imageio.imwrite(newnamesforlater[i][:-4] + \".png\", newimage)\n",
" # newimage.close()\n",
" with open(newnamesforlater[i][:-4] + \".png\", 'wb') as f:\n",
" writer = png.Writer(newimage.shape[1], newimage.shape[0], greyscale=True, bitdepth=16)\n",
" writer.write(f, newimage)\n",
" pngsizes.append(os.path.getsize(newnamesforlater[i][:-4] + \".png\"))\n",
"print(np.sum(pngsizes)/np.sum(file_sizes_old))\n"
"print(np.sum(pngsizes)/file_sizes_old[19])"
]
},
{
"cell_type": "code",
"execution_count": 19,
"execution_count": 39,
"metadata": {},
"outputs": [
{
......@@ -146,7 +186,7 @@
},
{
"cell_type": "code",
"execution_count": 20,
"execution_count": 40,
"metadata": {},
"outputs": [
{
......@@ -214,7 +254,7 @@
},
{
"cell_type": "code",
"execution_count": 65,
"execution_count": 43,
"metadata": {},
"outputs": [
{
......@@ -238,6 +278,51 @@
"print(np.sum(lwz_sizes)/np.sum(file_sizes_old))"
]
},
{
"cell_type": "code",
"execution_count": 52,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"images/1626032610_393963/NoInterference.tiff\n",
"0.005975943965048414\n"
]
}
],
"source": [
"lwz_sizes = []\n",
"for i in range(19,20):\n",
" print(images[i])\n",
" newimage = Image.open(images[i])\n",
" newimage = np.array(newimage)\n",
" newimage = newimage[1:]\n",
" newimage = Image.fromarray(newimage)\n",
" newimage.save(newnamesforlater[i][:-4]+ \"lzw\" + \".tiff\", compression='tiff_lzw', tiffinfo={317: 2})\n",
"\n",
" lwz_sizes.append(os.path.getsize(newnamesforlater[i][:-4]+ \"lzw\" + \".tiff\"))\n",
"print(np.sum(lwz_sizes)/np.sum(file_sizes_old))"
]
},
{
"cell_type": "code",
"execution_count": 53,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"0.7888902959444759\n"
]
}
],
"source": [
"print(np.sum(lwz_sizes)/file_sizes_old[19])"
]
},
{
"cell_type": "code",
"execution_count": 59,
......@@ -257,15 +342,15 @@
},
{
"cell_type": "code",
"execution_count": 4,
"execution_count": 50,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"524\n",
"262\n"
"263\n",
"263\n"
]
}
],
......@@ -282,7 +367,7 @@
},
{
"cell_type": "code",
"execution_count": 51,
"execution_count": 47,
"metadata": {},
"outputs": [],
"source": [
......@@ -307,290 +392,351 @@
},
{
"cell_type": "code",
"execution_count": 54,
"execution_count": 48,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"1178\n",
"1442\n",
"13_Compressedlzw.tiff\n",
"7803_3_Compressed.png\n",
"7803_5_Compressed.png\n",
"7803_1_Compressed.png\n",
"_5_Compressedlzw.tiff\n",
"803_14_Compressed.png\n",
"2RemovedFirstLine.tif\n",
"7803_8_Compressed.txt\n",
"RemovedFirstLine.tiff\n",
"0RemovedFirstLine.tif\n",
"_7_Compressedlzw.tiff\n",
"4RemovedFirstLine.tif\n",
"10_Compressedlzw.tiff\n",
"033496_437803_11.tiff\n",
"_0_Compressedlzw.tiff\n",
"7803_8_Compressed.png\n",
"RemovedFirstLine.tiff\n",
"3RemovedFirstLine.tif\n",
"033496_437803_13.tiff\n",
"6033496_437803_18.jp4\n",
"7803_4_Compressed.txt\n",
"RemovedFirstLine.tiff\n",
"7803_3_Compressed.txt\n",
"_2_Compressedlzw.tiff\n",
"803_10_Compressed.png\n",
"803_15_Compressed.txt\n",
"5RemovedFirstLine.tif\n",
"7803_7_Compressed.png\n",
"_8_Compressedlzw.tiff\n",
"803_13_Compressed.txt\n",
"RemovedFirstLine.tiff\n",
"7803_9_Compressed.png\n",
"033496_437803_15.tiff\n",
"9RemovedFirstLine.tif\n",
"803_13_Compressed.png\n",
"6033496_437803_19.jp4\n",
"7803_1_Compressed.txt\n",
"7803_2_Compressed.txt\n",
"7803_5_Compressed.txt\n",
"8RemovedFirstLine.tif\n",
"4RemovedFirstLine.tif\n",
"803_12_Compressed.txt\n",
"033496_437803_12.tiff\n",
"12_Compressedlzw.tiff\n",
"803_11_Compressed.png\n",
"6033496_437803_2.tiff\n",
"_1_Compressedlzw.tiff\n",
"803_12_Compressed.png\n",
"RemovedFirstLine.tiff\n",
"803_14_Compressed.txt\n",
"7803_0_Compressed.png\n",
"_3_Compressedlzw.tiff\n",
"6033496_437803_17.jp4\n",
"7RemovedFirstLine.tif\n",
"7803_7_Compressed.txt\n",
"RemovedFirstLine.tiff\n",
"_9_Compressedlzw.tiff\n",
"6033496_437803_1.tiff\n",
"2RemovedFirstLine.tif\n",
"1RemovedFirstLine.tif\n",
"7803_4_Compressed.png\n",
"7803_2_Compressed.png\n",
"RemovedFirstLine.tiff\n",
"RemovedFirstLine.tiff\n",
"RemovedFirstLine.tiff\n",
"RemovedFirstLine.tiff\n",
"3RemovedFirstLine.tif\n",
"11_Compressedlzw.tiff\n",
"033496_437803_14.tiff\n",
"RemovedFirstLine.tiff\n",
"7803_0_Compressed.txt\n",
"6033496_437803_16.jp4\n",
"RemovedFirstLine.tiff\n",
"6033496_437803_4.tiff\n",
"5RemovedFirstLine.tif\n",
"6033496_437803_8.tiff\n",
"1RemovedFirstLine.tif\n",
"6033496_437803_9.tiff\n",
"033496_437803_10.tiff\n",
"803_11_Compressed.txt\n",
"0RemovedFirstLine.tif\n",
"_4_Compressedlzw.tiff\n",
"7803_9_Compressed.txt\n",
"803_15_Compressed.png\n",
"6033496_437803_3.tiff\n",
"RemovedFirstLine.tiff\n",
"RemovedFirstLine.tiff\n",
"803_10_Compressed.txt\n",
"6033496_437803_7.tiff\n",
"14_Compressedlzw.tiff\n",
"6033496_437803_5.tiff\n",
"RemovedFirstLine.tiff\n",
"15_Compressedlzw.tiff\n",
"6033496_437803_0.tiff\n",
"963_13_Compressed.png\n",
"RemovedFirstLine.tiff\n",
"RemovedFirstLine.tiff\n",
"11_Compressedlzw.tiff\n",
"7RemovedFirstLine.tif\n",
"2RemovedFirstLine.tif\n",
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],
......
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