Commit 8c0d7f5d authored by Oleg Dzhimiev's avatar Oleg Dzhimiev
Browse files

fixed empty array type to float32 instead of default

parent 684ce5dd

imagej_tiffwriter.py

+4 −7
Original line number Original line Diff line number Diff line
@@ -134,17 +134,14 @@ def save(path,images,labels=None,label_prefix="Label"): 
    labels_list = []

    labels_list = []

    if labels is None:

    if labels is None:

      for i in range(images.shape[0]):

      for i in range(images.shape[0]):

        labels_list.append(label_prefix+str(i))

        labels_list.append(label_prefix+str(i+1))

    else:

    else:

      labels_list = labels

      labels_list = labels





    print(labels_list)



    ijtags = imagej_metadata_tags({'Labels':labels_list}, '<')

    ijtags = imagej_metadata_tags({'Labels':labels_list}, '<')





    with tifffile.TiffWriter(path, bigtiff=False,imagej=True) as tif:

    with tifffile.TiffWriter(path, bigtiff=False,imagej=True) as tif:

      for i in range(images.shape[0]):

      for i in range(images.shape[0]):

        print(images[i].shape)

        tif.save(images[i], metadata={'version':'1.11a','loop': False}, extratags=ijtags)

        tif.save(images[i], metadata={'version':'1.11a','loop': False}, extratags=ijtags)





# Testing

# Testing
@@ -160,7 +157,7 @@ if __name__ == "__main__": 
  NX = 512

  NX = 512

  NY = 512

  NY = 512





  images = np.empty((NT,NY,NX))

  images = np.empty((NT,NY,NX),np.float32)





  import time

  import time

  print(str(time.time())+": Generating test images")

  print(str(time.time())+": Generating test images")