Commit 8c0d7f5d authored by Oleg Dzhimiev's avatar Oleg Dzhimiev
Browse files

fixed empty array type to float32 instead of default

parent 684ce5dd
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+4 −7
Original line number Diff line number Diff line
@@ -134,17 +134,14 @@ def save(path,images,labels=None,label_prefix="Label"):
    labels_list = []
    if labels is None:
      for i in range(images.shape[0]):
        labels_list.append(label_prefix+str(i))
        labels_list.append(label_prefix+str(i+1))
    else:
      labels_list = labels

    print(labels_list)

    ijtags = imagej_metadata_tags({'Labels':labels_list}, '<')

    with tifffile.TiffWriter(path, bigtiff=False,imagej=True) as tif:
      for i in range(images.shape[0]):
        print(images[i].shape)
        tif.save(images[i], metadata={'version':'1.11a','loop': False}, extratags=ijtags)

# Testing
@@ -160,7 +157,7 @@ if __name__ == "__main__":
  NX = 512
  NY = 512

  images = np.empty((NT,NY,NX))
  images = np.empty((NT,NY,NX),np.float32)

  import time
  print(str(time.time())+": Generating test images")