packing data, initial

test_2.py

+#!/usr/bin/env python3
+from PIL import Image
+import xml.etree.ElementTree as ET
+import numpy as np
+import matplotlib.pyplot as plt
+import imagej_tiff as ijt
+
+#tiff = ijt.imagej_tiff('test.tiff')
+#print(tiff.nimages)
+#print(tiff.labels)
+#print(tiff.infos)
+#tiff.show_images(['X-corr','Y-corr',0,2])
+#plt.show()
+
+import json
+import xml.etree.ElementTree as ET
+import xml.dom.minidom as minidom
+import ast
+
+def calc_packed_value(layer,index,tile):
+
+  t = tile.flatten()
+  a = layer[index]
+
+  res = 0
+  for i in a:
+    res += t[i[0]]*i[1]
+
+  return res
+
+
+def iterate_tile(lut,tile):
+  # hard coded layers names
+  lst = ['diagm-pair','diago-pair']
+  #lut['diagm-pair']
+  #stack = ijt.getstack(lst)
+
+
+
+
+e = ET.parse('tile_packing_table.xml').getroot()
+#print(ET.tostring(e))
+#reparsed = minidom.parseString(ET.tostring(e,""))
+#print(reparsed.toprettyxml(indent="\t"))
+
+# LUT is a dict
+LUT = {}
+
+for table in e:
+
+  layer = table.get('layer')
+  LUT[layer] = []
+
+  for row in table:
+    LUT[layer].append(ast.literal_eval(row.text))
+
+print(LUT)
+print("Done")

tile_packing_table.xml

+<Document>
+  <table layer='diagm-pair'>
+    <tr row='0' >[(2,1.0),   (3,1.0),  (4,1.0),  (5,1.0), (6,1.0)]</tr>
+    <tr row='1' >[(10,1.0), (11,1.0), (19,1.0), (20,1.0)]</tr>
+    <tr row='2' >[(12,1.0), (13,1.0), (14,1.0)]</tr>
+    <tr row='3' >[(15,1.0), (16,1.0), (24,1.0), (25, 1.0)]</tr>
+    <tr row='4' >[(18,1.0), (27,1.0), (36,1.0), (45,1.0), (54,1.0)]</tr>
+    <tr row='5' >[(21,1.0), (22,1.0), (23,1.0)]</tr>
+    <tr row='6' >[(26,1.0), (35,1.0), (44,1.0), (53,1.0), (62,1.0)]</tr>
+    <tr row='7' >[(28,1.0), (37,1.0), (46,1.0)]</tr>
+    <tr row='8' >[(29,1.0), (38,1.0), (47,1.0)]</tr>
+    <tr row='9' >[(30,1.0)]</tr>
+    <tr row='10'>[(31,1.0)]</tr>
+    <tr row='11'>[(32,1.0)]</tr>
+    <tr row='12'>[(33,1.0), (42,1.0), (51,1.0)]</tr>
+    <tr row='13'>[(34,1.0), (43,1.0), (52,1.0)]</tr>
+    <tr row='14'>[(39,1.0)]</tr>
+    <tr row='15'>[(40,1.0)]</tr>
+    <tr row='16'>[(41,1.0)]</tr>
+    <tr row='17'>[(48,1.0)]</tr>
+    <tr row='18'>[(49,1.0)]</tr>
+    <tr row='19'>[(50,1.0)]</tr>
+    <tr row='20'>[(55,1.0), (56,1.0), (64,1.0), (65,1.0)]</tr>
+    <tr row='21'>[(57,1.0), (58,1.0), (59,1.0)]</tr>
+    <tr row='22'>[(60,1.0), (61,1.0), (69,1.0), (70,1.0)]</tr>
+    <tr row='23'>[(66,1.0), (67,1.0), (68,1.0)]</tr>
+    <tr row='24'>[(74,1.0), (75,1.0), (76,1.0), (77,1.0), (78,1.0)]</tr>
+  </table>
+  <table layer='diago-pair'>
+    <tr row='0' >[(2,1.0),   (3,1.0),  (4,1.0),  (5,1.0), (6,1.0)]</tr>
+    <tr row='1' >[(10,1.0), (11,1.0), (19,1.0), (20,1.0)]</tr>
+    <tr row='2' >[(12,1.0), (13,1.0), (14,1.0)]</tr>
+    <tr row='3' >[(15,1.0), (16,1.0), (24,1.0), (25, 1.0)]</tr>
+    <tr row='4' >[(18,1.0), (27,1.0), (36,1.0), (45,1.0), (54,1.0)]</tr>
+    <tr row='5' >[(21,1.0), (22,1.0), (23,1.0)]</tr>
+    <tr row='6' >[(26,1.0), (35,1.0), (44,1.0), (53,1.0), (62,1.0)]</tr>
+    <tr row='7' >[(28,1.0), (37,1.0), (46,1.0)]</tr>
+    <tr row='8' >[(29,1.0), (38,1.0), (47,1.0)]</tr>
+    <tr row='9' >[(30,1.0)]</tr>
+    <tr row='10'>[(31,1.0)]</tr>
+    <tr row='11'>[(32,1.0)]</tr>
+    <tr row='12'>[(33,1.0), (42,1.0), (51,1.0)]</tr>
+    <tr row='13'>[(34,1.0), (43,1.0), (52,1.0)]</tr>
+    <tr row='14'>[(39,1.0)]</tr>
+    <tr row='15'>[(40,1.0)]</tr>
+    <tr row='16'>[(41,1.0)]</tr>
+    <tr row='17'>[(48,1.0)]</tr>
+    <tr row='18'>[(49,1.0)]</tr>
+    <tr row='19'>[(50,1.0)]</tr>
+    <tr row='20'>[(55,1.0), (56,1.0), (64,1.0), (65,1.0)]</tr>
+    <tr row='21'>[(57,1.0), (58,1.0), (59,1.0)]</tr>
+    <tr row='22'>[(60,1.0), (61,1.0), (69,1.0), (70,1.0)]</tr>
+    <tr row='23'>[(66,1.0), (67,1.0), (68,1.0)]</tr>
+    <tr row='24'>[(74,1.0), (75,1.0), (76,1.0), (77,1.0), (78,1.0)]</tr>
+  </table>
+</Document>
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