Loading src/main/java/CalibrationHardwareInterface.java +6 −3 Original line number Original line Diff line number Diff line Loading @@ -3120,7 +3120,7 @@ public class CalibrationHardwareInterface { } catch (IOException e) { } catch (IOException e) { String msg="Failed to write XML motor state file: "+path; String msg="Failed to write XML motor state file: "+path; IJ.showMessage("Error",msg); IJ.showMessage("Error",msg); throw new IOException (msg); extracted(msg); } } try { try { os.close(); os.close(); Loading @@ -3146,7 +3146,7 @@ public class CalibrationHardwareInterface { } catch (IOException e) { } catch (IOException e) { String msg="Failed to read XML configuration file: "+path; String msg="Failed to read XML configuration file: "+path; IJ.showMessage("Error",msg); IJ.showMessage("Error",msg); throw new IOException (msg); extracted(msg); } } try { try { is.close(); is.close(); Loading @@ -3164,11 +3164,14 @@ public class CalibrationHardwareInterface { } else { } else { String msg="motor"+(i+1)+" is undefined in "+path+". If the file is corrupted you may delete it."; String msg="motor"+(i+1)+" is undefined in "+path+". If the file is corrupted you may delete it."; IJ.showMessage("Error",msg); IJ.showMessage("Error",msg); throw new IOException (msg); extracted(msg); } } } } return savedPosition; return savedPosition; } } private void extracted(String msg) throws IOException { throw new IOException (msg); } public void checkEnabled(){ public void checkEnabled(){ if (isEnabled()) return; if (isEnabled()) return; GenericDialog gd = new GenericDialog("Enable motors"); GenericDialog gd = new GenericDialog("Enable motors"); Loading src/main/java/DebayerScissors.java +0 −1 Original line number Original line Diff line number Diff line Loading @@ -28,7 +28,6 @@ import ij.IJ; import ij.IJ; import ij.ImageStack; import ij.ImageStack; import java.lang.reflect.InvocationTargetException; import java.util.concurrent.atomic.AtomicInteger; import java.util.concurrent.atomic.AtomicInteger; import javax.swing.SwingUtilities; import javax.swing.SwingUtilities; Loading src/main/java/DenseCorrespondence.java +1 −1 Original line number Original line Diff line number Diff line Loading @@ -39,7 +39,7 @@ public class DenseCorrespondence { private void disparitySweepTile ( public void disparitySweepTile ( // never used so far int tileX, int tileX, int tileY, int tileY, CyclopeanTile [][] allCyclopeanMap, CyclopeanTile [][] allCyclopeanMap, Loading src/main/java/PixelMapping.java +24 −12 Original line number Original line Diff line number Diff line Loading @@ -9410,6 +9410,7 @@ public class PixelMapping { private BitSet innerMask=null; private BitSet innerMask=null; private int []borderMask=null; private int []borderMask=null; public int getNumberOfPlanes(){return this.maximums.length;} public int getNumberOfPlanes(){return this.maximums.length;} @SuppressWarnings("unused") public int getForegroundPlane(){return this.foregroundIndex;} public int getForegroundPlane(){return this.foregroundIndex;} public double getPlaneDisparity (int plane){return this.maximums[plane][0];} public double getPlaneDisparity (int plane){return this.maximums[plane][0];} public void setPlaneDisparity (double disparity, int plane){this.maximums[plane][0]=disparity;} public void setPlaneDisparity (double disparity, int plane){this.maximums[plane][0]=disparity;} Loading Loading @@ -9448,6 +9449,7 @@ public class PixelMapping { this.auxData=new float[n][]; this.auxData=new float[n][]; for (int i=0;i<n;i++) this.auxData[i]=null; for (int i=0;i<n;i++) this.auxData[i]=null; } } @SuppressWarnings("unused") public void resetAux(){ public void resetAux(){ this.auxData=null; this.auxData=null; } } Loading @@ -9455,6 +9457,7 @@ public class PixelMapping { if (this.auxData==null) initAux(n+1); if (this.auxData==null) initAux(n+1); this.auxData[n]=data; this.auxData[n]=data; } } @SuppressWarnings("unused") public float [][] getAux (){ public float [][] getAux (){ return this.auxData; return this.auxData; } } Loading @@ -9467,16 +9470,20 @@ public class PixelMapping { this.likely=new float[this.numPlanes][]; this.likely=new float[this.numPlanes][]; for (int i=0;i<this.numPlanes;i++) this.likely[i]=null; for (int i=0;i<this.numPlanes;i++) this.likely[i]=null; } } @SuppressWarnings("unused") public void resetLikely(){ public void resetLikely(){ this.likely=null; this.likely=null; } } @SuppressWarnings("unused") public void setLikely(int n, float [] data){ public void setLikely(int n, float [] data){ if (this.likely==null) initLikely(); if (this.likely==null) initLikely(); this.likely[n]=data; this.likely[n]=data; } } @SuppressWarnings("unused") public float [][] getLikely (){ public float [][] getLikely (){ return this.likely; return this.likely; } } @SuppressWarnings("unused") public float [] getLikely (int n){ public float [] getLikely (int n){ if ((this.likely==null) || (this.likely.length<=n)) return null; if ((this.likely==null) || (this.likely.length<=n)) return null; return this.likely[n]; return this.likely[n]; Loading @@ -9486,16 +9493,20 @@ public class PixelMapping { this.unlikely=new float[this.numPlanes][]; this.unlikely=new float[this.numPlanes][]; for (int i=0;i<this.numPlanes;i++) this.unlikely[i]=null; for (int i=0;i<this.numPlanes;i++) this.unlikely[i]=null; } } @SuppressWarnings("unused") public void resetUnlikely(){ public void resetUnlikely(){ this.unlikely=null; this.unlikely=null; } } @SuppressWarnings("unused") public void setUnlikely(int n, float [] data){ public void setUnlikely(int n, float [] data){ if (this.unlikely==null) initUnlikely(); if (this.unlikely==null) initUnlikely(); this.unlikely[n]=data; this.unlikely[n]=data; } } @SuppressWarnings("unused") public float [][] getUnlikely(){ public float [][] getUnlikely(){ return this.unlikely; return this.unlikely; } } @SuppressWarnings("unused") public float [] getUnlikely(int n){ public float [] getUnlikely(int n){ if ((this.unlikely==null) || (this.unlikely.length<=n)) return null; if ((this.unlikely==null) || (this.unlikely.length<=n)) return null; return this.unlikely[n]; return this.unlikely[n]; Loading Loading @@ -9584,6 +9595,7 @@ public class PixelMapping { * @param disparityTolerance - consider "this" as being withing disparityTolerance of disparity. NaN - do not filter by this * @param disparityTolerance - consider "this" as being withing disparityTolerance of disparity. NaN - do not filter by this * @return * @return */ */ @SuppressWarnings("unused") public boolean [] getEnabledNonOccluded( public boolean [] getEnabledNonOccluded( double disparityFG, double disparityFG, double disparity, double disparity, Loading Loading
src/main/java/CalibrationHardwareInterface.java +6 −3 Original line number Original line Diff line number Diff line Loading @@ -3120,7 +3120,7 @@ public class CalibrationHardwareInterface { } catch (IOException e) { } catch (IOException e) { String msg="Failed to write XML motor state file: "+path; String msg="Failed to write XML motor state file: "+path; IJ.showMessage("Error",msg); IJ.showMessage("Error",msg); throw new IOException (msg); extracted(msg); } } try { try { os.close(); os.close(); Loading @@ -3146,7 +3146,7 @@ public class CalibrationHardwareInterface { } catch (IOException e) { } catch (IOException e) { String msg="Failed to read XML configuration file: "+path; String msg="Failed to read XML configuration file: "+path; IJ.showMessage("Error",msg); IJ.showMessage("Error",msg); throw new IOException (msg); extracted(msg); } } try { try { is.close(); is.close(); Loading @@ -3164,11 +3164,14 @@ public class CalibrationHardwareInterface { } else { } else { String msg="motor"+(i+1)+" is undefined in "+path+". If the file is corrupted you may delete it."; String msg="motor"+(i+1)+" is undefined in "+path+". If the file is corrupted you may delete it."; IJ.showMessage("Error",msg); IJ.showMessage("Error",msg); throw new IOException (msg); extracted(msg); } } } } return savedPosition; return savedPosition; } } private void extracted(String msg) throws IOException { throw new IOException (msg); } public void checkEnabled(){ public void checkEnabled(){ if (isEnabled()) return; if (isEnabled()) return; GenericDialog gd = new GenericDialog("Enable motors"); GenericDialog gd = new GenericDialog("Enable motors"); Loading
src/main/java/DebayerScissors.java +0 −1 Original line number Original line Diff line number Diff line Loading @@ -28,7 +28,6 @@ import ij.IJ; import ij.IJ; import ij.ImageStack; import ij.ImageStack; import java.lang.reflect.InvocationTargetException; import java.util.concurrent.atomic.AtomicInteger; import java.util.concurrent.atomic.AtomicInteger; import javax.swing.SwingUtilities; import javax.swing.SwingUtilities; Loading
src/main/java/DenseCorrespondence.java +1 −1 Original line number Original line Diff line number Diff line Loading @@ -39,7 +39,7 @@ public class DenseCorrespondence { private void disparitySweepTile ( public void disparitySweepTile ( // never used so far int tileX, int tileX, int tileY, int tileY, CyclopeanTile [][] allCyclopeanMap, CyclopeanTile [][] allCyclopeanMap, Loading
src/main/java/PixelMapping.java +24 −12 Original line number Original line Diff line number Diff line Loading @@ -9410,6 +9410,7 @@ public class PixelMapping { private BitSet innerMask=null; private BitSet innerMask=null; private int []borderMask=null; private int []borderMask=null; public int getNumberOfPlanes(){return this.maximums.length;} public int getNumberOfPlanes(){return this.maximums.length;} @SuppressWarnings("unused") public int getForegroundPlane(){return this.foregroundIndex;} public int getForegroundPlane(){return this.foregroundIndex;} public double getPlaneDisparity (int plane){return this.maximums[plane][0];} public double getPlaneDisparity (int plane){return this.maximums[plane][0];} public void setPlaneDisparity (double disparity, int plane){this.maximums[plane][0]=disparity;} public void setPlaneDisparity (double disparity, int plane){this.maximums[plane][0]=disparity;} Loading Loading @@ -9448,6 +9449,7 @@ public class PixelMapping { this.auxData=new float[n][]; this.auxData=new float[n][]; for (int i=0;i<n;i++) this.auxData[i]=null; for (int i=0;i<n;i++) this.auxData[i]=null; } } @SuppressWarnings("unused") public void resetAux(){ public void resetAux(){ this.auxData=null; this.auxData=null; } } Loading @@ -9455,6 +9457,7 @@ public class PixelMapping { if (this.auxData==null) initAux(n+1); if (this.auxData==null) initAux(n+1); this.auxData[n]=data; this.auxData[n]=data; } } @SuppressWarnings("unused") public float [][] getAux (){ public float [][] getAux (){ return this.auxData; return this.auxData; } } Loading @@ -9467,16 +9470,20 @@ public class PixelMapping { this.likely=new float[this.numPlanes][]; this.likely=new float[this.numPlanes][]; for (int i=0;i<this.numPlanes;i++) this.likely[i]=null; for (int i=0;i<this.numPlanes;i++) this.likely[i]=null; } } @SuppressWarnings("unused") public void resetLikely(){ public void resetLikely(){ this.likely=null; this.likely=null; } } @SuppressWarnings("unused") public void setLikely(int n, float [] data){ public void setLikely(int n, float [] data){ if (this.likely==null) initLikely(); if (this.likely==null) initLikely(); this.likely[n]=data; this.likely[n]=data; } } @SuppressWarnings("unused") public float [][] getLikely (){ public float [][] getLikely (){ return this.likely; return this.likely; } } @SuppressWarnings("unused") public float [] getLikely (int n){ public float [] getLikely (int n){ if ((this.likely==null) || (this.likely.length<=n)) return null; if ((this.likely==null) || (this.likely.length<=n)) return null; return this.likely[n]; return this.likely[n]; Loading @@ -9486,16 +9493,20 @@ public class PixelMapping { this.unlikely=new float[this.numPlanes][]; this.unlikely=new float[this.numPlanes][]; for (int i=0;i<this.numPlanes;i++) this.unlikely[i]=null; for (int i=0;i<this.numPlanes;i++) this.unlikely[i]=null; } } @SuppressWarnings("unused") public void resetUnlikely(){ public void resetUnlikely(){ this.unlikely=null; this.unlikely=null; } } @SuppressWarnings("unused") public void setUnlikely(int n, float [] data){ public void setUnlikely(int n, float [] data){ if (this.unlikely==null) initUnlikely(); if (this.unlikely==null) initUnlikely(); this.unlikely[n]=data; this.unlikely[n]=data; } } @SuppressWarnings("unused") public float [][] getUnlikely(){ public float [][] getUnlikely(){ return this.unlikely; return this.unlikely; } } @SuppressWarnings("unused") public float [] getUnlikely(int n){ public float [] getUnlikely(int n){ if ((this.unlikely==null) || (this.unlikely.length<=n)) return null; if ((this.unlikely==null) || (this.unlikely.length<=n)) return null; return this.unlikely[n]; return this.unlikely[n]; Loading Loading @@ -9584,6 +9595,7 @@ public class PixelMapping { * @param disparityTolerance - consider "this" as being withing disparityTolerance of disparity. NaN - do not filter by this * @param disparityTolerance - consider "this" as being withing disparityTolerance of disparity. NaN - do not filter by this * @return * @return */ */ @SuppressWarnings("unused") public boolean [] getEnabledNonOccluded( public boolean [] getEnabledNonOccluded( double disparityFG, double disparityFG, double disparity, double disparity, Loading