testing different cost functions (d24659c3) · Commits · Elphel / imagej-elphel

src/main/java/ConnectionCosts.java

+13 −7

Original line number	Diff line number	Diff line
		@@ -32,7 +32,9 @@ public class ConnectionCosts {
		double orthoWeight;
		double diagonalWeight;
		double starPwr; // Divide cost by number of connections to this power
		double starWeightPwr; // Use this power of tile weight when calculating connection cost
		double starValPwr; // Raise value of each tile before averaging

		int steps;
		int [][][] neibs_init;
		int [] mod_tiles;
		@@ -48,6 +50,7 @@ public class ConnectionCosts {
		double orthoWeight,
		double diagonalWeight,
		double starPwr, // Divide cost by number of connections to this power
		double starWeightPwr, // Use this power of tile weight when calculating connection cost
		double starValPwr, // Raise value of each tile before averaging
		int steps,
		TilePlanes.PlaneData [][] planes,
		@@ -60,6 +63,7 @@ public class ConnectionCosts {
		this.orthoWeight = orthoWeight;
		this.diagonalWeight = diagonalWeight;
		this.starPwr = starPwr; // Divide cost by number of connections to this power
		this.starWeightPwr = starWeightPwr;
		this.starValPwr = starValPwr; // Raise value of each tile before averaging
		this.steps = steps;
		}
		@@ -203,7 +207,7 @@ public class ConnectionCosts {
		orthoWeight,
		diagonalWeight,
		starPwr, // double starPwr, // Divide cost by number of connections to this power
		// starValPwr, //double starValPwr, // Raise value of each tile before averaging
		starWeightPwr,
		tnSurface,
		preferDisparity,
		-1); // debugLevel);
		@@ -268,7 +272,7 @@ public class ConnectionCosts {
		}

		if (neibs_changed){
		vw[isTile][nl] = getStarValueWeight(
		vw[isTile][nl] = getStarValueWeight2(
		nsTile,
		nl,
		neibs0,
		@@ -276,7 +280,7 @@ public class ConnectionCosts {
		orthoWeight,
		diagonalWeight,
		starPwr, // double starPwr, // Divide cost by number of connections to this power
		// starValPwr, //double starValPwr, // Raise value of each tile before averaging
		starWeightPwr, //
		tnSurface,
		preferDisparity,
		-1); // debugLevel);
		@@ -348,7 +352,7 @@ public class ConnectionCosts {
		* @param neibs array of 8 neighbors layers (N,NE,...NW), -1 - not connected
		* @param orthoWeight multiply contribution of ortho neighbors
		* @param diagonalWeight multiply contribution of diagonal neighbors
		* @param diagonalWeight divide value by number of connections to this power (if !=0)
		* @param starPwr, // Divide cost by number of connections to this power
		* @param tnSurface TileNeibs instance to navigate tile index and control array borders
		* @param preferDisparity - the first eigenvalue/vector is the most disparity-like
		* (false - smallest eigenvalue)
		@@ -362,7 +366,7 @@ public class ConnectionCosts {
		double orthoWeight,
		double diagonalWeight,
		double starPwr, // Divide cost by number of connections to this power
		// double starValPwr, // Raise value of each tile before averaging
		double starWeightPwr, // Use this power of tile weight when calculating connection cost
		TileSurface.TileNeibs tnSurface,
		boolean preferDisparity,
		int debugLevel)
		@@ -377,6 +381,7 @@ public class ConnectionCosts {
		merged_plane = merged_plane.mergePlaneToThis(
		other_plane, // PlaneData otherPd,
		other_weight, // double scale_other,
		starWeightPwr, //
		false, // boolean ignore_weights,
		true, // boolean sum_weights,
		preferDisparity,
		@@ -409,7 +414,7 @@ public class ConnectionCosts {
		*/


		public double [] getStarValueWeight(
		public double [] getStarValueWeight2(
		int nsTile,
		int nl,
		int [] neibs,
		@@ -417,7 +422,7 @@ public class ConnectionCosts {
		double orthoWeight,
		double diagonalWeight,
		double starPwr, // Divide cost by number of connections to this power
		// double starValPwr, // Raise value of each tile before averaging
		double starWeightPwr, // Use this power of tile weight when calculating connection cost
		TileSurface.TileNeibs tnSurface,
		boolean preferDisparity,
		int debugLevel)
		@@ -453,6 +458,7 @@ public class ConnectionCosts {
		merged_plane = merged_plane.mergePlaneToThis(
		other_plane, // PlaneData otherPd,
		entry.getValue(), // double scale_other,
		starPwr, // Divide cost by number of connections to this power
		false, // boolean ignore_weights,
		true, // boolean sum_weights,
		preferDisparity,

src/main/java/EyesisCorrectionParameters.java

+15 −0

Original line number	Diff line number	Diff line
		@@ -2172,6 +2172,8 @@ public class EyesisCorrectionParameters {
		public boolean plDbgMerge = true; // Combine 'other' plane with current
		public double plWorstWorsening = 2.0; // Worst case worsening after merge
		public double plWorstWorsening2 = 5.0; // Worst case worsening for thin planes
		public double plWorstEq = 1.0; // Worst case worsening after merge with equal weights
		public double plWorstEq2 = 2.0; // Worst case worsening for thin planes with equal weights
		public double plOKMergeEigen = 0.03; // If result of the merged planes is below, OK to use thin planes (higher) threshold
		public double plMaxWorldSin2 = 0.1; // Maximal sine squared of the world angle between planes to merge. Set to >= 1.0 to disable
		public double plWeakWorsening = 1.0; // Relax merge requirements for weaker planes
		@@ -2185,6 +2187,7 @@ public class EyesisCorrectionParameters {
		public double plStarOrtho = 0.5; // When calculating cost for the connections scale 4 ortho neighbors
		public double plStarDiag = 0.25; // When calculating cost for the connections scale 4 diagonal neighbors
		public double plStarPwr = 0.5; // Divide cost by number of connections to this power
		public double plStarWeightPwr = 0.5; // use this power of tile weight when calculating connection cost
		public double plStarValPwr = 1.0; // Raise value of each tile before averaging
		public double plDblTriLoss = 0.0001; // When resolving double triangles allow minor degradation (0.0 - strict)
		public boolean plNewConfl = false; // Allow more conflicts if overall cost is reduced
		@@ -2535,6 +2538,8 @@ public class EyesisCorrectionParameters {
		properties.setProperty(prefix+"plDbgMerge", this.plDbgMerge+"");
		properties.setProperty(prefix+"plWorstWorsening", this.plWorstWorsening +"");
		properties.setProperty(prefix+"plWorstWorsening2",this.plWorstWorsening2 +"");
		properties.setProperty(prefix+"plWorstEq", this.plWorstEq +"");
		properties.setProperty(prefix+"plWorstEq2", this.plWorstEq2 +"");
		properties.setProperty(prefix+"plOKMergeEigen", this.plOKMergeEigen +"");
		properties.setProperty(prefix+"plMaxWorldSin2", this.plMaxWorldSin2 +"");
		properties.setProperty(prefix+"plWeakWorsening", this.plWeakWorsening +"");
		@@ -2547,6 +2552,7 @@ public class EyesisCorrectionParameters {
		properties.setProperty(prefix+"plStarOrtho", this.plStarOrtho +"");
		properties.setProperty(prefix+"plStarDiag", this.plStarDiag +"");
		properties.setProperty(prefix+"plStarPwr", this.plStarPwr +"");
		properties.setProperty(prefix+"plStarWeightPwr", this.plStarWeightPwr +"");
		properties.setProperty(prefix+"plStarValPwr", this.plStarValPwr +"");
		properties.setProperty(prefix+"plDblTriLoss", this.plDblTriLoss +"");
		properties.setProperty(prefix+"plNewConfl", this.plNewConfl+"");
		@@ -2877,6 +2883,8 @@ public class EyesisCorrectionParameters {
		if (properties.getProperty(prefix+"plDbgMerge")!=null) this.plDbgMerge=Boolean.parseBoolean(properties.getProperty(prefix+"plDbgMerge"));
		if (properties.getProperty(prefix+"plWorstWorsening")!=null) this.plWorstWorsening=Double.parseDouble(properties.getProperty(prefix+"plWorstWorsening"));
		if (properties.getProperty(prefix+"plWorstWorsening2")!=null) this.plWorstWorsening2=Double.parseDouble(properties.getProperty(prefix+"plWorstWorsening2"));
		if (properties.getProperty(prefix+"plWorstEq")!=null) this.plWorstEq=Double.parseDouble(properties.getProperty(prefix+"plWorstEq"));
		if (properties.getProperty(prefix+"plWorstEq2")!=null) this.plWorstEq2=Double.parseDouble(properties.getProperty(prefix+"plWorstEq2"));
		if (properties.getProperty(prefix+"plOKMergeEigen")!=null) this.plOKMergeEigen=Double.parseDouble(properties.getProperty(prefix+"plOKMergeEigen"));
		if (properties.getProperty(prefix+"plMaxWorldSin2")!=null) this.plMaxWorldSin2=Double.parseDouble(properties.getProperty(prefix+"plMaxWorldSin2"));
		if (properties.getProperty(prefix+"plWeakWorsening")!=null) this.plWeakWorsening=Double.parseDouble(properties.getProperty(prefix+"plWeakWorsening"));
		@@ -2889,6 +2897,7 @@ public class EyesisCorrectionParameters {
		if (properties.getProperty(prefix+"plStarOrtho")!=null) this.plStarOrtho=Double.parseDouble(properties.getProperty(prefix+"plStarOrtho"));
		if (properties.getProperty(prefix+"plStarDiag")!=null) this.plStarDiag=Double.parseDouble(properties.getProperty(prefix+"plStarDiag"));
		if (properties.getProperty(prefix+"plStarPwr")!=null) this.plStarPwr=Double.parseDouble(properties.getProperty(prefix+"plStarPwr"));
		if (properties.getProperty(prefix+"plStarWeightPwr")!=null) this.plStarWeightPwr=Double.parseDouble(properties.getProperty(prefix+"plStarWeightPwr"));
		if (properties.getProperty(prefix+"plStarValPwr")!=null) this.plStarValPwr=Double.parseDouble(properties.getProperty(prefix+"plStarValPwr"));
		if (properties.getProperty(prefix+"plDblTriLoss")!=null) this.plDblTriLoss=Double.parseDouble(properties.getProperty(prefix+"plDblTriLoss"));
		if (properties.getProperty(prefix+"plNewConfl")!=null) this.plNewConfl=Boolean.parseBoolean(properties.getProperty(prefix+"plNewConfl"));
		@@ -3247,6 +3256,8 @@ public class EyesisCorrectionParameters {
		gd.addCheckbox ("Combine 'other' plane with the current (unused)", this.plDbgMerge);
		gd.addNumericField("Worst case worsening after merge", this.plWorstWorsening, 6);
		gd.addNumericField("Worst case worsening for thin planes", this.plWorstWorsening2, 6);
		gd.addNumericField("Worst case worsening after merge with equal weights", this.plWorstEq, 6);
		gd.addNumericField("Worst case worsening for thin planes with equal weights", this.plWorstEq2, 6);
		gd.addNumericField("If result of the merged planes is below, OK to use thin planes (higher) threshold ",this.plOKMergeEigen, 6);
		gd.addNumericField("Maximal sine squared of the world angle between planes to merge. Set to >= 1.0 to disable", this.plMaxWorldSin2, 6);
		gd.addNumericField("Relax merge requirements for weaker planes", this.plWeakWorsening, 6);
		@@ -3259,6 +3270,7 @@ public class EyesisCorrectionParameters {
		gd.addNumericField("When calculating cost for the connections scale 4 ortho neighbors", this.plStarOrtho, 6);
		gd.addNumericField("When calculating cost for the connections scale 4 diagonal neighbors", this.plStarDiag, 6);
		gd.addNumericField("Divide cost by number of connections to this power", this.plStarPwr, 6);
		gd.addNumericField("Use this power of tile weight when calculating connection cost", this.plStarWeightPwr, 6);
		gd.addNumericField("Raise value of each tile before averaging", this.plStarValPwr, 6);
		gd.addNumericField("When resolving double triangles allow minor degradation (0.0 - strict)", this.plDblTriLoss, 6);
		gd.addCheckbox ("Allow more conflicts if overall cost is reduced", this.plNewConfl);
		@@ -3602,6 +3614,8 @@ public class EyesisCorrectionParameters {
		this.plDbgMerge= gd.getNextBoolean();
		this.plWorstWorsening= gd.getNextNumber();
		this.plWorstWorsening2= gd.getNextNumber();
		this.plWorstEq= gd.getNextNumber();
		this.plWorstEq2= gd.getNextNumber();
		this.plOKMergeEigen= gd.getNextNumber();
		this.plMaxWorldSin2= gd.getNextNumber();
		this.plWeakWorsening= gd.getNextNumber();
		@@ -3614,6 +3628,7 @@ public class EyesisCorrectionParameters {
		this.plStarOrtho= gd.getNextNumber();
		this.plStarDiag= gd.getNextNumber();
		this.plStarPwr= gd.getNextNumber();
		this.plStarWeightPwr= gd.getNextNumber();
		this.plStarValPwr= gd.getNextNumber();
		this.plDblTriLoss= gd.getNextNumber();
		this.plNewConfl= gd.getNextBoolean();

src/main/java/SuperTiles.java

+109 −7

File changed.

Preview size limit exceeded, changes collapsed.

src/main/java/TilePlanes.java

+42 −4

Original line number	Diff line number	Diff line
		@@ -2033,9 +2033,27 @@ public class TilePlanes {
		* @return PlaneData object representing merged planes with combined weight (scale_other*otherPd.weight + this.weight),
		* recalculated center, eigenvalues and eigenvectors
		*/
		public PlaneData mergePlaneToThis1(
		PlaneData otherPd,
		double scale_other,
		boolean ignore_weights,
		boolean sum_weights,
		boolean preferDisparity, // Always start with disparity-most axis (false - lowest eigenvalue)
		int debugLevel)
		{
		return mergePlaneToThis(
		otherPd,
		scale_other,
		1.0, // double starWeightPwr, // Use this power of tile weight when calculating connection cost
		ignore_weights,
		sum_weights,
		preferDisparity, // Always start with disparity-most axis (false - lowest eigenvalue)
		debugLevel);
		}
		public PlaneData mergePlaneToThis(
		PlaneData otherPd,
		double scale_other,
		double starWeightPwr, // Use this power of tile weight when calculating connection cost
		boolean ignore_weights,
		boolean sum_weights,
		boolean preferDisparity, // Always start with disparity-most axis (false - lowest eigenvalue)
		@@ -2058,8 +2076,17 @@ public class TilePlanes {
		Matrix this_eig_vectors = new Matrix(this.vectors).transpose(); // vectors are saved as rows
		Matrix this_center = new Matrix(this.getZxy(),3);
		Matrix other_center = new Matrix(otherPd.getZxy(),3); // should already be relative to this supertile center
		double sum_weight = scale_other * otherPd.weight + this.weight;
		double other_fraction = ignore_weights? (scale_other/(scale_other + 1.0)): ((scale_other * otherPd.weight) / sum_weight);
		double this_weight = this.weight;
		double other_weight = otherPd.weight;
		if (starWeightPwr == 0){
		ignore_weights = true;
		} else if (starWeightPwr != 1.0){
		this_weight = Math.pow(this_weight, starWeightPwr);
		other_weight = Math.pow(other_weight,starWeightPwr);
		}

		double sum_weight = scale_other * other_weight + this_weight;// should be the same for
		double other_fraction = ignore_weights? (scale_other/(scale_other + 1.0)): ((scale_other * other_weight) / sum_weight);
		Matrix common_center = this_center.times(1.0 - other_fraction).plus(other_center.times(other_fraction));
		Matrix other_offset = other_center.minus(this_center); // other center from this center
		if ((this.values[0] == 0.0) \|\| (otherPd.values[0] == 0.0)) {
		@@ -2189,12 +2216,23 @@ public class TilePlanes {
		pd.setZxy(common_center.getColumnPackedCopy()); // set new center
		// what weight to use? cloned is original weight for this supertile
		// or use weighted average like below?
		double new_weight;
		if (sum_weights) {
		new_weight = sum_weight; // normalize while averaging by the caller
		} else { // how it was before
		new_weight = other_fraction * other_weight + (1.0 - other_fraction) * this_weight;
		}
		if (!ignore_weights && ((starWeightPwr != 1.0))){
		new_weight = Math.pow(new_weight,1.0/starWeightPwr);
		}
		pd.setWeight(new_weight);
		/*
		if (sum_weights) {
		pd.setWeight(sum_weight); // normalize while averaging by the caller
		} else { // how it was before
		pd.setWeight(other_fraction * otherPd.weight + (1.0 - other_fraction) * this.weight);
		pd.setWeight(other_fraction * other_weight + (1.0 - other_fraction) * this_weight);
		}

		*/
		return pd;
		}

src/main/java/TileProcessor.java

+18 −13

Original line number	Diff line number	Diff line
		@@ -3419,6 +3419,8 @@ public class TileProcessor {
		st.filterNeighborPlanes(
		clt_parameters.plWorstWorsening, // final double worst_worsening,
		clt_parameters.plWorstWorsening2,// final double worst_worsening2 Worst case worsening for thin planes,
		clt_parameters.plWorstEq, // final double worstEq, // Worst case worsening after merge with equal weights
		clt_parameters.plWorstEq2, // final double worstEq2, // Worst case worsening for thin planes with equal weights
		clt_parameters.plWeakWorsening, // final double worst_worsening,
		clt_parameters.plOKMergeEigen, // final double okMergeEigen, f result of the merged planes is below, OK to use thin planes (higher) threshold
		clt_parameters.plMaxWorldSin2, // final double maxWorldSin2,
		@@ -3458,6 +3460,7 @@ public class TileProcessor {
		clt_parameters.plStarOrtho, // double orthoWeight,
		clt_parameters.plStarDiag, // double diagonalWeight,
		clt_parameters.plStarPwr, // double starPwr, // Divide cost by number of connections to this power
		clt_parameters.plStarWeightPwr,// double starWeightPwr, // Use this power of tile weight when calculating connection cost
		clt_parameters.plStarValPwr, // double starValPwr, // Raise value of each tile before averaging
		clt_parameters.plDblTriLoss, // double diagonalWeight,
		clt_parameters.plNewConfl, // boolean preferDisparity, // Allow more conflicts if overall cost is reduced
		@@ -3568,6 +3571,8 @@ public class TileProcessor {
		st.filterNeighborPlanes(
		clt_parameters.plWorstWorsening, // final double worst_worsening,
		clt_parameters.plWorstWorsening2,// final double worst_worsening2 Worst case worsening for thin planes,
		clt_parameters.plWorstEq, // ffinal double worstEq, // Worst case worsening after merge with equal weights
		clt_parameters.plWorstEq2, // ffinal double worstEq2, // Worst case worsening for thin planes with equal weights
		clt_parameters.plWeakWorsening, // final double worst_worsening,
		clt_parameters.plOKMergeEigen, // final double okMergeEigen,
		clt_parameters.plMaxWorldSin2, // final double maxWorldSin2,
		@@ -3594,6 +3599,7 @@ public class TileProcessor {
		clt_parameters.plStarOrtho, // double orthoWeight,
		clt_parameters.plStarDiag, // double diagonalWeight,
		clt_parameters.plStarPwr, // double starPwr, // Divide cost by number of connections to this power
		clt_parameters.plStarWeightPwr, // double starWeightPwr, // Use this power of tile weight when calculating connection cost
		clt_parameters.plStarValPwr, // double starValPwr, // Raise value of each tile before averaging
		clt_parameters.plDblTriLoss, // double diagonalWeight,
		clt_parameters.plNewConfl, // boolean preferDisparity, // Allow more conflicts if overall cost is reduced
		@@ -3602,7 +3608,6 @@ public class TileProcessor {
		1, // final int debugLevel)
		clt_parameters.tileX,
		clt_parameters.tileY);

		}

		while (true) {

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