Implementing OpticalFlow

src/main/java/com/elphel/imagej/tileprocessor/QuadCLT.java

@@ -214,7 +214,7 @@ public class QuadCLT extends QuadCLTCPU {
 	
 	
 	
-	
+	@Deprecated
 	public double [][] getOpticalFlow(
 			double disparity_min,
 			double disparity_max,
@@ -282,7 +282,8 @@ public class QuadCLT extends QuadCLTCPU {
 		
 		return null;
 	}
-	
+
+	@Deprecated
 	public double[] fillNaNGapsOld(
 			double [] data,
 			int       n,
@@ -305,6 +306,7 @@ public class QuadCLT extends QuadCLTCPU {
 		}
 		return d;
 	}
+	@Deprecated	
 	public double[] fillNaNGaps(
 			double [] data,
 			int       n,
@@ -322,6 +324,7 @@ public class QuadCLT extends QuadCLTCPU {
 				threadsMax); // final int threadsMax)      // maximal number of threads to launch                         
 	}
 	
+	@Deprecated
 	public double[][][]  get_pair(
 			double k_prev,
 			QuadCLT qprev,
@@ -408,7 +411,8 @@ public class QuadCLT extends QuadCLTCPU {
 		}		
 		return pair;
 	}
-	
+
+	@Deprecated
 	public double [][] transformCameraVew(
 			QuadCLT   camera_QuadClt,
 			double [] camera_xyz, // camera center in world coordinates

src/main/java/com/elphel/imagej/tileprocessor/QuadCLTCPU.java

@@ -141,6 +141,9 @@ public class QuadCLTCPU {
     public double [][]                                     ds_from_main = null;
     public double [][]                                     dsrbg = null; // D, S, R,B,G
     
+    public TileProcessor getTileProcessor() {
+    	return tp;
+    }
     
 	public QuadCLTCPU(
 			QuadCLTCPU  qParent,
@@ -225,6 +228,9 @@ public class QuadCLTCPU {
 	public double getTimeStamp() {
 		return Double.parseDouble(image_name.replace("_", "."));
 	}
+	public String getImageName() {
+		return image_name;
+	}
     
 	public int restoreDSI(String suffix) // "-DSI_COMBO", "-DSI_MAIN" (DSI_COMBO_SUFFIX, DSI_MAIN_SUFFIX)
 	{

src/main/java/com/elphel/imagej/tileprocessor/TwoQuadCLT.java

@@ -8259,39 +8259,46 @@ if (debugLevel > -100) return true; // temporarily !
 		
 		double corr_scale = 0.75;
 ///		for (int i = 0; i < quadCLTs.length; i++) {
+		OpticalFlow opticalFlow = new OpticalFlow(
+				threadsMax, // int            threadsMax,  // maximal number of threads to launch
+				updateStatus); // boolean        updateStatus);
+		int         margin = 4; //  extra margins over 16x16 tiles to accommodate distorted destination tiles
+		double      tolerance_absolute = 0.25; // absolute disparity half-range in each tile
+		double      tolerance_relative = 0.2; // relative disparity half-range in each tile
+		double      center_occupancy =   0.25;   // fraction of remaining  tiles in the center 8x8 area (<1.0)
+
+		int         num_passes = 100;
+		double      max_change = 0.005 ;
+		
 		for (int i = 1; i < quadCLTs.length; i++) {
 			QuadCLT qPrev = (i > 0) ? quadCLTs[i - 1] : null;
+			
+			double [][][] source_tiles = opticalFlow.prepareReferenceTiles(
+					quadCLTs[i],        // final QuadCLT     qthis,
+//					margin,             // final int         margin, // extra margins over 16x16 tiles to accommodate distorted destination tiles
+					tolerance_absolute, // final double      tolerance_absolute, // absolute disparity half-range in each tile
+					tolerance_relative, // final double      tolerance_relative, // relative disparity half-range in each tile
+					center_occupancy,   // final double      center_occupancy,   // fraction of remaining  tiles in the center 8x8 area (<1.0)
+					2); // final int         debug_level)
+			
+			opticalFlow.fillTilesNans(
+					source_tiles,          // final double [][][] nan_tiles,
+					quadCLTs[i],           // final QuadCLT     qthis,
+//					margin,                // final int         margin, // extra margins over 16x16 tiles to accommodate distorted destination tiles
+//					0.5 * Math.sqrt(2.0),  // double    diagonal_weight, // relative to ortho
+					num_passes,            // final int         num_passes,
+					max_change,            // final double      max_change,
+					2);                    // final int         debug_level)
+			
+			
 
-			double [][][] pair_sets = quadCLTs[i].get_pair(
-					k_prev,
-					qPrev,
-					corr_scale,
-					1); // -1); // int debug_level);
-
-			// old code
-			/*		
-			double [][] dbg_img = quadCLTs[i].test_back_forth_debug(
+			double [][][] pair_sets =
+					opticalFlow.get_pair(
 					k_prev,
+					quadCLTs[i],
 					qPrev,
 					corr_scale,
 					1); // -1); // int debug_level);
-			double [][] ds0 = {dbg_img[6],dbg_img[2]};
-			double [][] ds1 = {dbg_img[7],dbg_img[3]};
-
-
-			double [] disparity = quadCLTs[i].dsi[TwoQuadCLT.DSI_DISPARITY_MAIN]; 
-			double [] strength = quadCLTs[i].dsi[TwoQuadCLT.DSI_STRENGTH_MAIN]; 
-			double disparity_min = -1.0;
-			double disparity_max =  1.0;
-			quadCLTs[i].getOpticalFlow(
-					disparity_min,
-					disparity_max,
-					ds0,
-					ds1,
-					1); // int debugLevel)
-			*/
-
-
 		}
 
 		/*