Added parameters, JPEG textures (c46680e7) · Commits · Elphel / imagej-elphel

src/main/java/com/elphel/imagej/cameras/CLTParameters.java

+133 −18

Original line number	Original line	Diff line number	Diff line
	@@ -386,15 +386,35 @@ public class CLTParameters {

	public boolean photo_debug = false;// Generate images and text		public boolean photo_debug = false;// Generate images and text

	public double tex_disp_adiffo = 0.12; // 0.35; // 0.3; disparity absolute tolerance to connect in ortho directions		public double tex_disp_adiffo = 0.10; // 0.35; // 0.3; disparity absolute tolerance to connect in ortho directions
	public double tex_disp_rdiffo = 0.1; // 0.12; // 0.1; disparity relative tolerance to connect in ortho directions		public double tex_disp_rdiffo = 0.08; // 0.12; // 0.1; disparity relative tolerance to connect in ortho directions
	public double tex_disp_adiffd = 0.18; // 0.6; // 0.4; disparity absolute tolerance to connect in diagonal directions		public double tex_disp_adiffd = 0.14; // 0.6; // 0.4; disparity absolute tolerance to connect in diagonal directions
	public double tex_disp_rdiffd = 0.15; // 0.18; // 0.12; disparity relative tolerance to connect in diagonal directions		public double tex_disp_rdiffd = 0.12; // 0.18; // 0.12; disparity relative tolerance to connect in diagonal directions
	public double tex_disp_fof = 1.5; // Increase tolerance for friend of a friend		public double tex_disp_fof = 1.5; // Increase tolerance for friend of a friend

			public int tex_jump_tiles = 2; // "jump" over small gaps when building initial clusters. jump_r == 2 allows jumping to other tiles in 5x5 square around the defined tile
			public double tex_disp_adiffj = 0.10; // maximal absolute disparity difference for the "jumps".
			public double tex_disp_rdiffj = 0.08; // maximal relative disparity difference for the "jumps".

	public double tex_fg_bg = 0.1; // Minimal FG/BG disparity difference (NaN bg if difference from FG < this)		public double tex_fg_bg = 0.1; // Minimal FG/BG disparity difference (NaN bg if difference from FG < this)
	public double tex_distort = 0.8; // Maximal texture distortion to accumulate multiple scenes (0 - any)		public double tex_distort = 0.8; // Maximal texture distortion to accumulate multiple scenes (0 - any)
	public double tex_mb = 1.0; // Reduce texture weight if motion blur exceeds this (as square of MB length)		public double tex_mb = 1.0; // Reduce texture weight if motion blur exceeds this (as square of MB length)

			public double tex_max_disparity_lim = 100.0; // do not allow stray disparities above this
			public double tex_min_trim_disparity = 2.0; // do not try to trim texture outlines with lower disparities
			public int tex_max_neib_lev = 2; // 1 - single tiles layer around, 2 - two layers
			public boolean tex_split_textures = false; // (debugLevel > 1000); // false;
			public int tex_subdiv_tiles = 4; // subdivide tiles to smaller triangles
			public int tex_sky_below = 10; // extend sky these tile rows below lowest
			public boolean tex_debug_disp_tri = false; // !batch_mode && (debugLevel > 0); // TODO: use clt_parameters

			public int tex_add_bg_tiles = 0; // If there is gap between clusters, add extra row of background tiles
			public boolean tex_save_full_textures = true; // false; // true;
			public double tex_alpha_threshold = 0.5;
			public boolean tex_renormalize = true; // false - use normalizations from previous scenes to keep consistent colors
			public boolean tex_alpha = false; // also - use jpeg?
			public int tex_jpeg_quality = 95; // JPEG quality for textures

	public boolean tex_um = true; // Use unsharp mask filter for textures		public boolean tex_um = true; // Use unsharp mask filter for textures
	public double tex_um_sigma = 2.0; // Unsharp mask sigma for textures		public double tex_um_sigma = 2.0; // Unsharp mask sigma for textures
	public double tex_um_weight = 0.8; // Unsharp mask weight		public double tex_um_weight = 0.8; // Unsharp mask weight
	@@ -1416,10 +1436,30 @@ public class CLTParameters {
	properties.setProperty(prefix+"tex_disp_adiffd", this.tex_disp_adiffd+""); // double		properties.setProperty(prefix+"tex_disp_adiffd", this.tex_disp_adiffd+""); // double
	properties.setProperty(prefix+"tex_disp_rdiffd", this.tex_disp_rdiffd+""); // double		properties.setProperty(prefix+"tex_disp_rdiffd", this.tex_disp_rdiffd+""); // double
	properties.setProperty(prefix+"tex_disp_fof", this.tex_disp_fof+""); // double		properties.setProperty(prefix+"tex_disp_fof", this.tex_disp_fof+""); // double

			properties.setProperty(prefix+"tex_jump_tiles", this.tex_jump_tiles+""); // int
			properties.setProperty(prefix+"tex_disp_adiffj", this.tex_disp_adiffj+""); // double
			properties.setProperty(prefix+"tex_disp_rdiffj", this.tex_disp_rdiffj+""); // double

	properties.setProperty(prefix+"tex_fg_bg", this.tex_fg_bg+""); // double		properties.setProperty(prefix+"tex_fg_bg", this.tex_fg_bg+""); // double
	properties.setProperty(prefix+"tex_distort", this.tex_distort+""); // double		properties.setProperty(prefix+"tex_distort", this.tex_distort+""); // double
	properties.setProperty(prefix+"tex_mb", this.tex_mb+""); // double		properties.setProperty(prefix+"tex_mb", this.tex_mb+""); // double

			properties.setProperty(prefix+"tex_max_disparity_lim", this.tex_max_disparity_lim+""); // double
			properties.setProperty(prefix+"tex_min_trim_disparity", this.tex_min_trim_disparity+""); // double
			properties.setProperty(prefix+"tex_max_neib_lev", this.tex_max_neib_lev+""); // int
			properties.setProperty(prefix+"tex_split_textures", this.tex_split_textures+""); // boolean
			properties.setProperty(prefix+"tex_subdiv_tiles", this.tex_subdiv_tiles+""); // int
			properties.setProperty(prefix+"tex_sky_below", this.tex_sky_below+""); // int
			properties.setProperty(prefix+"tex_debug_disp_tri", this.tex_debug_disp_tri+""); // boolean

			properties.setProperty(prefix+"tex_add_bg_tiles", this.tex_add_bg_tiles+""); // int
			properties.setProperty(prefix+"tex_save_full_textures", this.tex_save_full_textures+""); // boolean
			properties.setProperty(prefix+"tex_alpha_threshold", this.tex_alpha_threshold+""); // double
			properties.setProperty(prefix+"tex_renormalize", this.tex_renormalize+""); // boolean
			properties.setProperty(prefix+"tex_alpha", this.tex_alpha+""); // boolean
			properties.setProperty(prefix+"tex_jpeg_quality", this.tex_jpeg_quality+""); // int

	properties.setProperty(prefix+"tex_um", this.tex_um+""); // boolean		properties.setProperty(prefix+"tex_um", this.tex_um+""); // boolean
	properties.setProperty(prefix+"tex_um_sigma", this.tex_um_sigma+""); // double		properties.setProperty(prefix+"tex_um_sigma", this.tex_um_sigma+""); // double
	properties.setProperty(prefix+"tex_um_weight", this.tex_um_weight+""); // double		properties.setProperty(prefix+"tex_um_weight", this.tex_um_weight+""); // double
	@@ -2321,9 +2361,28 @@ public class CLTParameters {
	if (properties.getProperty(prefix+"tex_disp_adiffd")!=null) this.tex_disp_adiffd=Double.parseDouble(properties.getProperty(prefix+"tex_disp_adiffd"));		if (properties.getProperty(prefix+"tex_disp_adiffd")!=null) this.tex_disp_adiffd=Double.parseDouble(properties.getProperty(prefix+"tex_disp_adiffd"));
	if (properties.getProperty(prefix+"tex_disp_rdiffd")!=null) this.tex_disp_rdiffd=Double.parseDouble(properties.getProperty(prefix+"tex_disp_rdiffd"));		if (properties.getProperty(prefix+"tex_disp_rdiffd")!=null) this.tex_disp_rdiffd=Double.parseDouble(properties.getProperty(prefix+"tex_disp_rdiffd"));
	if (properties.getProperty(prefix+"tex_disp_fof")!=null) this.tex_disp_fof=Double.parseDouble(properties.getProperty(prefix+"tex_disp_fof"));		if (properties.getProperty(prefix+"tex_disp_fof")!=null) this.tex_disp_fof=Double.parseDouble(properties.getProperty(prefix+"tex_disp_fof"));

			if (properties.getProperty(prefix+"tex_jump_tiles")!=null) this.tex_jump_tiles=Integer.parseInt(properties.getProperty(prefix+"tex_jump_tiles"));
			if (properties.getProperty(prefix+"tex_disp_adiffj")!=null) this.tex_disp_adiffj=Double.parseDouble(properties.getProperty(prefix+"tex_disp_adiffj"));
			if (properties.getProperty(prefix+"tex_disp_rdiffj")!=null) this.tex_disp_rdiffj=Double.parseDouble(properties.getProperty(prefix+"tex_disp_rdiffj"));

	if (properties.getProperty(prefix+"tex_fg_bg")!=null) this.tex_fg_bg=Double.parseDouble(properties.getProperty(prefix+"tex_fg_bg"));		if (properties.getProperty(prefix+"tex_fg_bg")!=null) this.tex_fg_bg=Double.parseDouble(properties.getProperty(prefix+"tex_fg_bg"));
	if (properties.getProperty(prefix+"tex_distort")!=null) this.tex_distort=Double.parseDouble(properties.getProperty(prefix+"tex_distort"));		if (properties.getProperty(prefix+"tex_distort")!=null) this.tex_distort=Double.parseDouble(properties.getProperty(prefix+"tex_distort"));
	if (properties.getProperty(prefix+"tex_mb")!=null) this.tex_mb=Double.parseDouble(properties.getProperty(prefix+"tex_mb"));		if (properties.getProperty(prefix+"tex_mb")!=null) this.tex_mb=Double.parseDouble(properties.getProperty(prefix+"tex_mb"));
			if (properties.getProperty(prefix+"tex_max_disparity_lim")!=null)this.tex_max_disparity_lim=Double.parseDouble(properties.getProperty(prefix+"tex_max_disparity_lim"));
			if (properties.getProperty(prefix+"tex_min_trim_disparity")!=null)this.tex_min_trim_disparity=Double.parseDouble(properties.getProperty(prefix+"tex_min_trim_disparity"));
			if (properties.getProperty(prefix+"tex_max_neib_lev")!=null) this.tex_max_neib_lev=Integer.parseInt(properties.getProperty(prefix+"tex_max_neib_lev"));
			if (properties.getProperty(prefix+"tex_split_textures")!=null) this.tex_split_textures=Boolean.parseBoolean(properties.getProperty(prefix+"tex_split_textures"));
			if (properties.getProperty(prefix+"tex_subdiv_tiles")!=null) this.tex_subdiv_tiles=Integer.parseInt(properties.getProperty(prefix+"tex_subdiv_tiles"));
			if (properties.getProperty(prefix+"tex_sky_below")!=null) this.tex_sky_below=Integer.parseInt(properties.getProperty(prefix+"tex_sky_below"));
			if (properties.getProperty(prefix+"tex_debug_disp_tri")!=null) this.tex_debug_disp_tri=Boolean.parseBoolean(properties.getProperty(prefix+"tex_debug_disp_tri"));

			if (properties.getProperty(prefix+"tex_add_bg_tiles")!=null) this.tex_add_bg_tiles=Integer.parseInt(properties.getProperty(prefix+"tex_add_bg_tiles"));
			if (properties.getProperty(prefix+"tex_save_full_textures")!=null)this.tex_save_full_textures=Boolean.parseBoolean(properties.getProperty(prefix+"tex_save_full_textures"));
			if (properties.getProperty(prefix+"tex_alpha_threshold")!=null) this.tex_alpha_threshold=Double.parseDouble(properties.getProperty(prefix+"tex_alpha_threshold"));
			if (properties.getProperty(prefix+"tex_renormalize")!=null) this.tex_renormalize=Boolean.parseBoolean(properties.getProperty(prefix+"tex_renormalize"));
			if (properties.getProperty(prefix+"tex_alpha")!=null) this.tex_alpha=Boolean.parseBoolean(properties.getProperty(prefix+"tex_alpha"));
			if (properties.getProperty(prefix+"tex_jpeg_quality")!=null) this.tex_jpeg_quality=Integer.parseInt(properties.getProperty(prefix+"tex_jpeg_quality"));

	if (properties.getProperty(prefix+"tex_um")!=null) this.tex_um=Boolean.parseBoolean(properties.getProperty(prefix+"tex_um"));		if (properties.getProperty(prefix+"tex_um")!=null) this.tex_um=Boolean.parseBoolean(properties.getProperty(prefix+"tex_um"));
	if (properties.getProperty(prefix+"tex_um_sigma")!=null) this.tex_um_sigma=Double.parseDouble(properties.getProperty(prefix+"tex_um_sigma"));		if (properties.getProperty(prefix+"tex_um_sigma")!=null) this.tex_um_sigma=Double.parseDouble(properties.getProperty(prefix+"tex_um_sigma"));
	@@ -3386,6 +3445,14 @@ public class CLTParameters {
	"Disparity relative tolerance to connect in diagonal directions.");		"Disparity relative tolerance to connect in diagonal directions.");
	gd.addNumericField("Relax friend-of-a friend tolerance", this.tex_disp_fof, 5,7,"",		gd.addNumericField("Relax friend-of-a friend tolerance", this.tex_disp_fof, 5,7,"",
	"Relax (increase disparity) tolerance for friend of a friend.");		"Relax (increase disparity) tolerance for friend of a friend.");

			gd.addNumericField("Jump over gaps building clusters", this.tex_jump_tiles, 0,3,"",
			"Jump over small gaps when building initial clusters. jump_r == 2 allows jumping to other tiles in 5x5 square around the defined tile.");
			gd.addNumericField("Maximal absolute disparity difference for jumps", this.tex_disp_adiffj, 5,7,"",
			"Maximal absolute disparity difference for the \"jumps\".");
			gd.addNumericField("Maximal relative disparity difference for jumps", this.tex_disp_rdiffj, 5,7,"",
			"Maximal relative disparity difference for the \"jumps\".");

	gd.addNumericField("Minimal FG/BG disparity separation", this.tex_fg_bg, 5,7,"pix",		gd.addNumericField("Minimal FG/BG disparity separation", this.tex_fg_bg, 5,7,"pix",
	"Minimal FG/BG disparity difference (NaN bg if difference from FG < this).");		"Minimal FG/BG disparity difference (NaN bg if difference from FG < this).");
	gd.addNumericField("Multiscene texture distortion", this.tex_distort, 5,7,"pix",		gd.addNumericField("Multiscene texture distortion", this.tex_distort, 5,7,"pix",
	@@ -3393,6 +3460,34 @@ public class CLTParameters {
	gd.addNumericField("Maximal motion blur to reduce weight",this.tex_mb, 5,7,"pix",		gd.addNumericField("Maximal motion blur to reduce weight",this.tex_mb, 5,7,"pix",
	"Reduce texture weight if motion blur exceeds this (as square of MB length).");		"Reduce texture weight if motion blur exceeds this (as square of MB length).");

			gd.addNumericField("Max disparity for meshe generation", this.tex_max_disparity_lim, 5,7,"pix",
			"Do not allow stray disparities above this.");
			gd.addNumericField("Minimal disparity for FG trimming", this.tex_min_trim_disparity, 5,7,"pix",
			"Do not try to trim texture outlines with lower disparities.");
			gd.addNumericField("Maximal border tile level", this.tex_max_neib_lev, 0,3,"",
			"1 - single tiles layer around, 2 - two layers. Optimized for 2, may be broken for other values.");
			gd.addCheckbox ("Split combo textures", this.tex_split_textures,
			"Split combined texture images. False use multi-cluster full size texture images.");
			gd.addNumericField("Subdivide tiles to emulate alpha", this.tex_subdiv_tiles, 0,3,"",
			"Subdivide tiles to smaller triangles to improve lateral resolution. Best for 1-2-4-8.");
			gd.addNumericField("Extend sky area", this.tex_sky_below, 0,3,"tiles",
			"if >=0, extend sky these tile rows below lowest and extend sky up, right and left to full image.");
			gd.addCheckbox ("Debug mesh triangles", this.tex_debug_disp_tri,
			"Generate debug images for mesh triangles.");

			gd.addNumericField("Add background tiles", this.tex_add_bg_tiles, 0,3,"tiles",
			"If there is gap between clusters, add extra row of background tiles. Obsolete?");
			gd.addCheckbox ("Save full textures", this.tex_save_full_textures,
			"Will save anyway if !tex_split_textures.");
			gd.addNumericField("Alpha threshold", this.tex_alpha_threshold, 5,7,"",
			"Alpha threshold to consider it opaque.");
			gd.addCheckbox ("Re-normalize photometric range", this.tex_renormalize,
			"If false - use normalizations from previous scenes to keep consistent colors.");
			gd.addCheckbox ("Use alpha in textures", this.tex_alpha,
			"Use alpha in textures, false - remove alpha.");
			gd.addNumericField("JPEG quality for textures", this.tex_jpeg_quality, 0,3,"%",
			"If <=0 - save as png.");

	gd.addMessage ("Textures rendering");		gd.addMessage ("Textures rendering");
	gd.addCheckbox ("Apply unsharp mask", this.tex_um,		gd.addCheckbox ("Apply unsharp mask", this.tex_um,
	"Use unsharp mask filter for texture.");		"Use unsharp mask filter for texture.");
	@@ -4461,10 +4556,30 @@ public class CLTParameters {
	this.tex_disp_adiffd = gd.getNextNumber();		this.tex_disp_adiffd = gd.getNextNumber();
	this.tex_disp_rdiffd = gd.getNextNumber();		this.tex_disp_rdiffd = gd.getNextNumber();
	this.tex_disp_fof = gd.getNextNumber();		this.tex_disp_fof = gd.getNextNumber();

			this.tex_jump_tiles = (int) gd.getNextNumber();
			this.tex_disp_adiffj = gd.getNextNumber();
			this.tex_disp_rdiffj = gd.getNextNumber();

	this.tex_fg_bg = gd.getNextNumber();		this.tex_fg_bg = gd.getNextNumber();
	this.tex_distort = gd.getNextNumber();		this.tex_distort = gd.getNextNumber();
	this.tex_mb = gd.getNextNumber();		this.tex_mb = gd.getNextNumber();

			this.tex_max_disparity_lim = gd.getNextNumber();
			this.tex_min_trim_disparity = gd.getNextNumber();
			this.tex_max_neib_lev = (int) gd.getNextNumber();
			this.tex_split_textures = gd.getNextBoolean();
			this.tex_subdiv_tiles = (int) gd.getNextNumber();
			this.tex_sky_below = (int) gd.getNextNumber();
			this.tex_debug_disp_tri = gd.getNextBoolean();

			this.tex_add_bg_tiles = (int) gd.getNextNumber();
			this.tex_save_full_textures = gd.getNextBoolean();
			this.tex_alpha_threshold = gd.getNextNumber();
			this.tex_renormalize = gd.getNextBoolean();
			this.tex_alpha = gd.getNextBoolean();
			this.tex_jpeg_quality = (int) gd.getNextNumber();

	this.tex_um = gd.getNextBoolean();		this.tex_um = gd.getNextBoolean();
	this.tex_um_sigma = gd.getNextNumber();		this.tex_um_sigma = gd.getNextNumber();
	this.tex_um_weight = gd.getNextNumber();		this.tex_um_weight = gd.getNextNumber();

src/main/java/com/elphel/imagej/correction/EyesisCorrections.java

+10 −1

Original line number	Original line	Diff line number	Diff line
	@@ -2715,6 +2715,7 @@ public class EyesisCorrections {
	int jpegQuality,// <0 - keep current, 0 - force Tiff, >0 use for JPEG		int jpegQuality,// <0 - keep current, 0 - force Tiff, >0 use for JPEG
	int debugLevel){		int debugLevel){
	if (path!=null) {		if (path!=null) {
			FileInfo fi = new FileInfo();
	path+=Prefs.getFileSeparator()+imp.getTitle();		path+=Prefs.getFileSeparator()+imp.getTitle();
	boolean hasAlphaHighByte = false;		boolean hasAlphaHighByte = false;
	if ((imp.getStackSize()==1) && (imp.getFileInfo().fileType== FileInfo.RGB)) {		if ((imp.getStackSize()==1) && (imp.getFileInfo().fileType== FileInfo.RGB)) {
	@@ -2735,7 +2736,8 @@ public class EyesisCorrections {
	path +".png",		path +".png",
	debugLevel		debugLevel
	);		);
			fi.url = path+".png";
			fi.fileName = imp.getTitle()+".png";
	} else {		} else {
	if (debugLevel > 0) System.out.println("Saving RGBA result to "+path+".tiff");		if (debugLevel > 0) System.out.println("Saving RGBA result to "+path+".tiff");
	try {		try {
	@@ -2753,6 +2755,8 @@ public class EyesisCorrections {
	} catch (DependencyException e) {		} catch (DependencyException e) {
	e.printStackTrace();		e.printStackTrace();
	}		}
			fi.url = path+".tiff";
			fi.fileName = imp.getTitle()+".tiff";
	}		}

	} else if (((imp.getStackSize()==1)) && (jpegQuality!=0) && ((imp.getFileInfo().fileType== FileInfo.RGB) \|\| (jpegQuality>0))) {		} else if (((imp.getStackSize()==1)) && (jpegQuality!=0) && ((imp.getFileInfo().fileType== FileInfo.RGB) \|\| (jpegQuality>0))) {
	@@ -2760,6 +2764,8 @@ public class EyesisCorrections {
	FileSaver fs=new FileSaver(imp);		FileSaver fs=new FileSaver(imp);
	if (jpegQuality>0) FileSaver.setJpegQuality(jpegQuality);		if (jpegQuality>0) FileSaver.setJpegQuality(jpegQuality);
	fs.saveAsJpeg(path+".jpeg");		fs.saveAsJpeg(path+".jpeg");
			fi.url = path+".jpeg";
			fi.fileName = imp.getTitle()+".jpeg";
	} else {		} else {
	if (debugLevel>0) System.out.println("Saving result to "+path+".tiff");		if (debugLevel>0) System.out.println("Saving result to "+path+".tiff");
	FileSaver fs=new FileSaver(imp);		FileSaver fs=new FileSaver(imp);
	@@ -2789,7 +2795,10 @@ public class EyesisCorrections {
	}		}
	} else if (imp.getStackSize()>1) fs.saveAsTiffStack(path+".tiff");		} else if (imp.getStackSize()>1) fs.saveAsTiffStack(path+".tiff");
	else fs.saveAsTiff(path+".tiff");		else fs.saveAsTiff(path+".tiff");
			fi.url = path+".tiff";
			fi.fileName = imp.getTitle()+".tiff";
	}		}
			imp.setFileInfo(fi); // only url
	}		}
	if (show) {		if (show) {
	imp.getProcessor().resetMinAndMax(); // probably not needed		imp.getProcessor().resetMinAndMax(); // probably not needed

src/main/java/com/elphel/imagej/tileprocessor/TexturedModel.java

+41 −37

Original line number	Original line	Diff line number	Diff line
	@@ -1845,13 +1845,37 @@ public class TexturedModel {
	{		{
	final boolean batch_mode = clt_parameters.batch_run;		final boolean batch_mode = clt_parameters.batch_run;
	final boolean gltf_emissive = clt_parameters.gltf_emissive;		final boolean gltf_emissive = clt_parameters.gltf_emissive;
	final boolean use_alpha_blend = false;		final boolean use_alpha_blend = clt_parameters.gltf_alpha_blend;
			final double tex_disp_adiffo = clt_parameters.tex_disp_adiffo; // 0.35; // 0.3; disparity absolute tolerance to connect in ortho directions
			final double tex_disp_rdiffo = clt_parameters.tex_disp_rdiffo; // 0.12; // 0.1; disparity relative tolerance to connect in ortho directions
			final double tex_disp_adiffd = clt_parameters.tex_disp_adiffd; // 0.6; // 0.4; disparity absolute tolerance to connect in diagonal directions
			final double tex_disp_rdiffd = clt_parameters.tex_disp_rdiffd; // 0.18; // 0.12; disparity relative tolerance to connect in diagonal directions
			final double tex_disp_fof = clt_parameters.tex_disp_fof; // 1.5; // Increase tolerance for friend of a friend
			final int jump_r = clt_parameters.tex_jump_tiles; // 2;
			final double disp_adiffj = clt_parameters.tex_disp_adiffj;
			final double disp_rdiffj = clt_parameters.tex_disp_rdiffj;
			final double tex_fg_bg = clt_parameters.tex_fg_bg; // 0.1; // Minimal FG/BG disparity difference (NaN bg if difference from FG < this)
			final double max_disparity_lim = clt_parameters.tex_max_disparity_lim; // 100.0; // do not allow stray disparities above this
			final double min_trim_disparity =clt_parameters.tex_min_trim_disparity;// 2.0; // do not try to trim texture outlines with lower disparities
			final int max_neib_lev = clt_parameters.tex_max_neib_lev; // 2; // 1 - single tiles layer around, 2 - two layers
			final boolean split_textures = clt_parameters.tex_split_textures; // (debugLevel > 1000); // false;
			final int subdiv_tiles = clt_parameters.tex_subdiv_tiles; // 4; // subdivide tiles to smaller triangles
			final int sky_below = clt_parameters.tex_sky_below; // 10; // extend sky these tile rows below lowest
			final boolean debug_disp_tri = clt_parameters.tex_debug_disp_tri; // !batch_mode && (debugLevel > 0); // TODO: use clt_parameters

			// If there is gap between clusters, add extra row of background tiles
			int add_bg_tiles = clt_parameters.tex_add_bg_tiles; // 0; // 1;
			final boolean save_full_textures=clt_parameters.tex_save_full_textures \|\| !clt_parameters.tex_split_textures; //true; // false; // true;
			final double alpha_threshold = clt_parameters.tex_alpha_threshold; // 0.5;
			final boolean renormalize = clt_parameters.tex_renormalize; // true; // false - use normalizations from previous scenes to keep consistent colors
			final boolean no_alpha = !clt_parameters.tex_alpha; // true; // also - use jpeg?
			final int jpeg_quality = clt_parameters.tex_jpeg_quality; //95; // JPEG quality for textures

			final int sky_layer = 0; // source disparity layer that contains "blue sky"

	final int ref_index = scenes.length - 1;		final int ref_index = scenes.length - 1;
	final QuadCLT ref_scene = scenes[ref_index];		final QuadCLT ref_scene = scenes[ref_index];
	final TileProcessor tp = ref_scene.getTileProcessor();		final TileProcessor tp = ref_scene.getTileProcessor();
	final boolean split_textures = (debugLevel > 1000); // false;
	final int subdiv_tiles = 4; // subdivide tiles to smaller triangles
	final boolean debug_disp_tri = !batch_mode && (debugLevel > 0); // TODO: use clt_parameters

	if (ref_scene.image_data == null){		if (ref_scene.image_data == null){
	return false; // not used in lwir		return false; // not used in lwir
	@@ -1863,23 +1887,7 @@ public class TexturedModel {
	long startStepTime=System.nanoTime();		long startStepTime=System.nanoTime();
	final int tilesX = tp.getTilesX();		final int tilesX = tp.getTilesX();
	final int transform_size = tp.getTileSize();		final int transform_size = tp.getTileSize();
	final double tex_disp_adiffo = clt_parameters.tex_disp_adiffo; // 0.35; // 0.3; disparity absolute tolerance to connect in ortho directions
	final double tex_disp_rdiffo = clt_parameters.tex_disp_rdiffo; // 0.12; // 0.1; disparity relative tolerance to connect in ortho directions
	final double tex_disp_adiffd = clt_parameters.tex_disp_adiffd; // 0.6; // 0.4; disparity absolute tolerance to connect in diagonal directions
	final double tex_disp_rdiffd = clt_parameters.tex_disp_rdiffd; // 0.18; // 0.12; disparity relative tolerance to connect in diagonal directions
	final double tex_disp_fof = clt_parameters.tex_disp_fof; // 1.5; // Increase tolerance for friend of a friend

	final int jump_r = 2; // FIXME
	final double disp_adiffj = clt_parameters.tex_disp_adiffo; // FIXME
	final double disp_rdiffj = clt_parameters.tex_disp_rdiffo; // FIXME

	final double tex_fg_bg = clt_parameters.tex_fg_bg; // 0.1; // Minimal FG/BG disparity difference (NaN bg if difference from FG < this)
	final int max_neib_lev = 2; // 1 - single tiles layer around, 2 - two layers


	final int tex_cluster_gap= 2; // gap between clusters Make clt_parameters
	final double max_disparity_lim = 100.0; // do not allow stray disparities above this
	final double min_trim_disparity = 2.0; // do not try to trim texture outlines with lower disparities
	final int width = tilesX * transform_size;		final int width = tilesX * transform_size;
	final int height = tp.getTilesY() * transform_size;		final int height = tp.getTilesY() * transform_size;
	// get multi-scene disparity map for FG and BG and filter it		// get multi-scene disparity map for FG and BG and filter it
	@@ -1931,8 +1939,6 @@ public class TexturedModel {
	ds_fg_bg[1][i] = Double.NaN;		ds_fg_bg[1][i] = Double.NaN;
	}		}
	}		}
	int sky_layer = 0;
	int sky_below = 10; // extend sky these tile rows below lowest
	// Create data for consolidated textures (multiple texture segments combined in same "passes"		// Create data for consolidated textures (multiple texture segments combined in same "passes"
	TileCluster [] tileClusters = clusterizeFgBg( // wrong result type, not decided		TileCluster [] tileClusters = clusterizeFgBg( // wrong result type, not decided
	tilesX, // final int tilesX,		tilesX, // final int tilesX,
	@@ -1967,7 +1973,6 @@ public class TexturedModel {
	scenes_sel[i] = true;		scenes_sel[i] = true;
	}		}
	// If there is gap between clusters, add extra row of background tiles		// If there is gap between clusters, add extra row of background tiles
	int add_bg_tiles = 0; // 1;
	while ((add_bg_tiles--) > 0) {		while ((add_bg_tiles--) > 0) {
	extendClustersBackground(		extendClustersBackground(
	tileClusters, // final TileCluster[] tileClusters,		tileClusters, // final TileCluster[] tileClusters,
	@@ -1977,8 +1982,6 @@ public class TexturedModel {
	tilesX); // final int tilesX)		tilesX); // final int tilesX)
	}		}

	boolean renormalize = true;// false - use normalizations from previous scenes to keep consistent colors
	final boolean no_alpha = true;

	double[][][] faded_textures = getInterCombinedTextures( // return ImagePlus[] matching tileClusters[], with alpha		double[][][] faded_textures = getInterCombinedTextures( // return ImagePlus[] matching tileClusters[], with alpha
	clt_parameters, // final CLTParameters clt_parameters,		clt_parameters, // final CLTParameters clt_parameters,
	@@ -2004,22 +2007,21 @@ public class TexturedModel {
	transform_size, // int transform_size,		transform_size, // int transform_size,
	debugLevel); // final int debug_level)		debugLevel); // final int debug_level)

	boolean save_full_textures = true; // false; // true;

	EyesisCorrectionParameters.CorrectionParameters correctionsParameters = ref_scene.correctionsParameters;		EyesisCorrectionParameters.CorrectionParameters correctionsParameters = ref_scene.correctionsParameters;
	String x3d_dir = ref_scene.getX3dDirectory();		String x3d_dir = ref_scene.getX3dDirectory();
	if (save_full_textures \|\| !split_textures) {		boolean use_png = (jpeg_quality <= 0) \|\| !no_alpha;
			if (save_full_textures) { // \|\| !split_textures) {
	for (int nslice = 0; nslice < combined_textures.length; nslice++) {		for (int nslice = 0; nslice < combined_textures.length; nslice++) {
	EyesisCorrections.saveAndShow(		EyesisCorrections.saveAndShow(
	combined_textures[nslice], // imp_texture_cluster,		combined_textures[nslice], // imp_texture_cluster,
	x3d_dir,		x3d_dir,
	correctionsParameters.png,		use_png, // correctionsParameters.png,
	false, // (nslice < 4), // clt_parameters.show_textures,		false, // (nslice < 4), // clt_parameters.show_textures,
	-1, // jpegQuality){// <0 - keep current, 0 - force Tiff, >0 use for JPEG		jpeg_quality, // -1, // jpegQuality){// <0 - keep current, 0 - force Tiff, >0 use for JPEG
	1); //		1); //
	}		}
	}		}
	double alpha_threshold = 0.5;
	boolean [][] combined_alphas = null;		boolean [][] combined_alphas = null;
	if (subdiv_tiles > 0) { // Use subdiv_tiles==1 to keep alpha		if (subdiv_tiles > 0) { // Use subdiv_tiles==1 to keep alpha
	combined_alphas = new boolean [faded_textures.length][faded_textures[0][0].length];		combined_alphas = new boolean [faded_textures.length][faded_textures[0][0].length];
	@@ -2040,9 +2042,9 @@ public class TexturedModel {
	EyesisCorrections.saveAndShow(		EyesisCorrections.saveAndShow(
	imp_textures[i], // imp_texture_cluster,		imp_textures[i], // imp_texture_cluster,
	x3d_dir,		x3d_dir,
	correctionsParameters.png,		use_png, // correctionsParameters.png,
	false, // (nslice < 4), // clt_parameters.show_textures,		false, // (nslice < 4), // clt_parameters.show_textures,
	-1, // jpegQuality){// <0 - keep current, 0 - force Tiff, >0 use for JPEG		jpeg_quality, // -1, // jpegQuality){// <0 - keep current, 0 - force Tiff, >0 use for JPEG
	1); //		1); //
	}		}
	}		}
	@@ -2159,7 +2161,9 @@ public class TexturedModel {
	}		}
	continue;		continue;
	}		}
	String texturePath = imp_texture_cluster.getTitle()+".png";		// String texturePath = imp_texture_cluster.getTitle()+".png";
			String texturePath = imp_texture_cluster.getOriginalFileInfo().fileName;

	double [] scan_disparity = tileClusters[nslice].getSubDisparity(sub_i); // limited to cluster bounds		double [] scan_disparity = tileClusters[nslice].getSubDisparity(sub_i); // limited to cluster bounds
	boolean [] scan_selected = tileClusters[nslice].getSubSelected(sub_i); // limited to cluster bounds		boolean [] scan_selected = tileClusters[nslice].getSubSelected(sub_i); // limited to cluster bounds
	int [] scan_border_int = tileClusters[nslice].getSubBorderInt(sub_i); // limited to cluster bounds		int [] scan_border_int = tileClusters[nslice].getSubBorderInt(sub_i); // limited to cluster bounds

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