Adding arbitrary reference frame (not just the last), debugging 'Super

batch'

src/main/java/com/elphel/imagej/correction/EyesisCorrections.java

@@ -2705,7 +2705,7 @@ public class EyesisCorrections {
 				png,
 				show,
 				jpegQuality,//  <0 - keep current, 0 - force Tiff, >0 use for JPEG
-				this.debugLevel);
+				this.debugLevel+3);
 	}
 
 

src/main/java/com/elphel/imagej/correction/Eyesis_Correction.java

@@ -7141,7 +7141,9 @@ public class Eyesis_Correction implements PlugIn, ActionListener {
 		QuadCLT quadCLT = use_aux ? QUAD_CLT_AUX : QUAD_CLT;
 		ColorProcParameters colorProcParameters = use_aux ? COLOR_PROC_PARAMETERS_AUX : COLOR_PROC_PARAMETERS;
 		try {
-			TWO_QUAD_CLT.interIntraExportML(quadCLT, // QuadCLT quadCLT_main,
+			TWO_QUAD_CLT.interIntraExportML(
+					quadCLT, // QuadCLT quadCLT_main,
+					-1, // use last // int  indx_ref,     // = num_scenes - 1; 
 					CLT_PARAMETERS, // EyesisCorrectionParameters.DCTParameters dct_parameters,
 					DEBAYER_PARAMETERS, // EyesisCorrectionParameters.DebayerParameters debayerParameters,
 					colorProcParameters, // EyesisCorrectionParameters.ColorProcParameters colorProcParameters,

src/main/java/com/elphel/imagej/tileprocessor/OpticalFlow.java

@@ -1526,7 +1526,8 @@ public class OpticalFlow {
 							}
 							int iwidth =  imax_tX - imin_tX + 1;
 							int iheight = imax_tY - imin_tY + 1;
-							if ((iwidth <= 0) || (iheight <= 0)) {
+////							if ((iwidth <= 0) || (iheight <= 0)) {
+							if ((iwidth <= 1) || (iheight <= 1)) {
 								System.out.println ("prepareSceneTiles(): iwidth ="+iwidth+", iheight ="+iheight+", min_tX="+min_tX+", imin_tY="+imin_tY+", max_tX="+max_tX+", imax_tY="+imax_tY);
 								continue;
 							}
@@ -3480,8 +3481,8 @@ public class OpticalFlow {
 		}		
 		double [][] disparity_map = null;
 		for (int nrefine = 0; nrefine < max_refines; nrefine++) {
-			Runtime.getRuntime().gc();
-			System.out.println("--- Free memory="+Runtime.getRuntime().freeMemory()+" (of "+Runtime.getRuntime().totalMemory()+")");
+	///		Runtime.getRuntime().gc();
+	///		System.out.println("--- Free memory="+Runtime.getRuntime().freeMemory()+" (of "+Runtime.getRuntime().totalMemory()+")");
 			int mcorr_sel = Correlation2d.corrSelEncode(clt_parameters.img_dtt,scenes[indx_ref].getNumSensors());
 			disparity_map = correlateInterscene(
 					clt_parameters, // final CLTParameters  clt_parameters,
@@ -3496,8 +3497,8 @@ public class OpticalFlow {
 					false,          // final boolean        no_map, // do not generate disparity_map (time-consuming LMA)
 					debug_level-5);   // final int            debug_level)
 
-			Runtime.getRuntime().gc();
-			System.out.println("--- Free memory="+Runtime.getRuntime().freeMemory()+" (of "+Runtime.getRuntime().totalMemory()+")");
+	///		Runtime.getRuntime().gc();
+	///		System.out.println("--- Free memory="+Runtime.getRuntime().freeMemory()+" (of "+Runtime.getRuntime().totalMemory()+")");
 
 			(new ShowDoubleFloatArrays()).showArrays(
 					disparity_map,
@@ -3699,8 +3700,8 @@ public class OpticalFlow {
 			}
 		}
 		for (int nrefine = 0; nrefine < max_refines; nrefine++) {
-			Runtime.getRuntime().gc();
-			System.out.println("--- Free memory="+Runtime.getRuntime().freeMemory()+" (of "+Runtime.getRuntime().totalMemory()+")");
+///			Runtime.getRuntime().gc();
+///			System.out.println("--- Free memory="+Runtime.getRuntime().freeMemory()+" (of "+Runtime.getRuntime().totalMemory()+")");
 
 			double [][] disparity_map = 
 					//		double [][][][][] clt_corr_partial =
@@ -3713,8 +3714,8 @@ public class OpticalFlow {
 							nrefine,        // final int            nrefine, // just for debug title
 							debug_level-5);   // final int            debug_level)
 
-			Runtime.getRuntime().gc();
-			System.out.println("--- Free memory="+Runtime.getRuntime().freeMemory()+" (of "+Runtime.getRuntime().totalMemory()+")");
+///			Runtime.getRuntime().gc();
+///			System.out.println("--- Free memory="+Runtime.getRuntime().freeMemory()+" (of "+Runtime.getRuntime().totalMemory()+")");
 			if (debug_level > 0) {
 				(new ShowDoubleFloatArrays()).showArrays(
 						disparity_map,
@@ -3972,8 +3973,8 @@ public class OpticalFlow {
 		}
 		
         ImagePlus imp_stack = new ImagePlus("scene_outlines", stack);
-        imp_stack.getProcessor().resetMinAndMax();
-        imp_stack.show();
+//        imp_stack.getProcessor().resetMinAndMax();
+//       imp_stack.show();
 		return imp_stack;
 	}
 	
@@ -3987,6 +3988,7 @@ public class OpticalFlow {
 			int                  debug_level
 			)
 	{
+		boolean generate_outlines = true; // TODO: move to configs
 		System.out.println("intersceneExport(), scene timestamp="+ref_scene.getImageName());
 		int num_scenes = scenes.length;
 		String [] combo_dsn_titles = {"disp", "strength","disp_lma","num_valid","change"};
@@ -4023,7 +4025,7 @@ public class OpticalFlow {
 		final int tilesX = ref_scene.getTileProcessor().getTilesX();
 		final int tilesY = ref_scene.getTileProcessor().getTilesY();
 		final int tiles = tilesX * tilesY;
-		if (debug_level > 100) { // add parameter?
+		if (generate_outlines) { // debug_level > 100) { // add parameter?
 			int        extra = 10; // pixels around largest outline
 			int        scale = 4;
 
@@ -4042,8 +4044,11 @@ public class OpticalFlow {
 					line_width_corners, // int        line_width_corners,
 					line_color_outline, // Color      line_color_outline,
 					line_color_corners  // Color      line_color_corners
-					);		
-			imp_outlines.show();
+					);
+			ref_scene.saveImagePlusInModelDirectory(
+					"scene_outlines", // String      suffix,
+					imp_outlines); // ImagePlus   imp)
+//			imp_outlines.show();
 		}
 		final double [][] combo_dsn_change = new double [combo_dsn_titles.length] [tiles];
 		for (int i = 0; i < combo_dsn.length; i++) { // 4 elements: "disp", "strength","disp_lma","num_valid"
@@ -4792,8 +4797,8 @@ public class OpticalFlow {
 			}
 		}		
 		for (int nrefine = 0; nrefine < max_refines; nrefine++) {
-			Runtime.getRuntime().gc();
-			System.out.println("--- Free memory="+Runtime.getRuntime().freeMemory()+" (of "+Runtime.getRuntime().totalMemory()+")");
+///			Runtime.getRuntime().gc();
+///			System.out.println("--- Free memory="+Runtime.getRuntime().freeMemory()+" (of "+Runtime.getRuntime().totalMemory()+")");
 			int mcorr_sel = Correlation2d.corrSelEncode(clt_parameters.img_dtt,scenes[indx_ref].getNumSensors());
 			double [][] disparity_map = 
 					correlateInterscene(
@@ -4809,8 +4814,8 @@ public class OpticalFlow {
 							false,          // final boolean        no_map, // do not generate disparity_map (time-consuming LMA)
 							debug_level-5);   // final int            debug_level)
 
-			Runtime.getRuntime().gc();
-			System.out.println("--- Free memory="+Runtime.getRuntime().freeMemory()+" (of "+Runtime.getRuntime().totalMemory()+")");
+///			Runtime.getRuntime().gc();
+///			System.out.println("--- Free memory="+Runtime.getRuntime().freeMemory()+" (of "+Runtime.getRuntime().totalMemory()+")");
 			
 			if (debug_level > 0) {
 				(new ShowDoubleFloatArrays()).showArrays(
@@ -5228,8 +5233,8 @@ public double[][] correlateIntersceneDebug( // only uses GPU and quad
 						wis_wh,                   // final int []         wh,
 						image_dtt.transform_size, // final int            transform_size,
 						threadsMax);              // final int            threadsMax)     // maximal number of threads to launch
-				Runtime.getRuntime().gc();
-				System.out.println("--- Free memory="+Runtime.getRuntime().freeMemory()+" (of "+Runtime.getRuntime().totalMemory()+")");
+///				Runtime.getRuntime().gc();
+///				System.out.println("--- Free memory="+Runtime.getRuntime().freeMemory()+" (of "+Runtime.getRuntime().totalMemory()+")");
 			}
 			if ((vis_corr_pd != null) || (fclt_corrs != null)) { // calculate and extract correlation
 				image_dtt.clt_process_tl_correlations_GPU(	// convert to pixel domain and process correlations already prepared in fcorr_td and/or fcorr_combo_td
@@ -5276,8 +5281,8 @@ public double[][] correlateIntersceneDebug( // only uses GPU and quad
 							threadsMax); // final int          threadsMax)     // maximal number of threads to launch
 							
 				}
-				Runtime.getRuntime().gc();
-				System.out.println("--- Free memory="+Runtime.getRuntime().freeMemory()+" (of "+Runtime.getRuntime().totalMemory()+")");
+///				Runtime.getRuntime().gc();
+///				System.out.println("--- Free memory="+Runtime.getRuntime().freeMemory()+" (of "+Runtime.getRuntime().totalMemory()+")");
 				//nscene
 				if (debug_dhv != null) {
 					debug_dhv[3 * nscene + 0] = disparity_map[ImageDtt.DISPARITY_INDEX_CM];
@@ -5450,8 +5455,8 @@ public double[][] correlateIntersceneDebug( // only uses GPU and quad
 					dbg_titles);
 		}
 		
-		Runtime.getRuntime().gc();
-		System.out.println("--- Free memory="+Runtime.getRuntime().freeMemory()+" (of "+Runtime.getRuntime().totalMemory()+")");
+///		Runtime.getRuntime().gc();
+///		System.out.println("--- Free memory="+Runtime.getRuntime().freeMemory()+" (of "+Runtime.getRuntime().totalMemory()+")");
 		final float  [][][]       fclt_corr = new float [tilesX * tilesY][][];
 		image_dtt.clt_process_tl_correlations_GPU(	// convert to pixel domain and process correlations already prepared in fcorr_td and/or fcorr_combo_td
 				clt_parameters.img_dtt,				// final ImageDttParameters  imgdtt_params,   // Now just extra correlation parameters, later will include, most others
@@ -5914,8 +5919,8 @@ public double[][] correlateIntersceneDebug( // only uses GPU and quad
 		}		
 		
 		
-		Runtime.getRuntime().gc();
-		System.out.println("--- Free memory="+Runtime.getRuntime().freeMemory()+" (of "+Runtime.getRuntime().totalMemory()+")");
+///		Runtime.getRuntime().gc();
+///		System.out.println("--- Free memory="+Runtime.getRuntime().freeMemory()+" (of "+Runtime.getRuntime().totalMemory()+")");
 
 		if (vis_corr_td != null) { // add combined data as the last slice
 			vis_corr_td[num_scenes] = ImageDtt.corr_td_wnd(
@@ -6281,8 +6286,8 @@ public double[][] correlateIntersceneDebug( // only uses GPU and quad
 
 
 		}
-		Runtime.getRuntime().gc();
-		System.out.println("--- Free memory="+Runtime.getRuntime().freeMemory()+" (of "+Runtime.getRuntime().totalMemory()+")");
+///		Runtime.getRuntime().gc();
+///		System.out.println("--- Free memory="+Runtime.getRuntime().freeMemory()+" (of "+Runtime.getRuntime().totalMemory()+")");
 		// Normalize accumulated corelations
 		if (ref_scene.hasGPU()) {
 			 accumulateCorrelationsAcOnly(
@@ -6385,8 +6390,8 @@ public double[][] correlateIntersceneDebug( // only uses GPU and quad
 			
 		}
 
-		Runtime.getRuntime().gc();
-		System.out.println("--- Free memory="+Runtime.getRuntime().freeMemory()+" (of "+Runtime.getRuntime().totalMemory()+")");
+///		Runtime.getRuntime().gc();
+///		System.out.println("--- Free memory="+Runtime.getRuntime().freeMemory()+" (of "+Runtime.getRuntime().totalMemory()+")");
 		if (show_accumulated_correlations || (accum_2d_corr != null)){ // -1
 			float [][] accum_2d_img = ImageDtt.corr_partial_dbg( // not used in lwir
 					fclt_corr, // final float  [][][]     fcorr_data,       // [tile][pair][(2*transform_size-1)*(2*transform_size-1)] // if null - will not calculate

src/main/java/com/elphel/imagej/tileprocessor/QuadCLT.java

@@ -109,6 +109,11 @@ public class QuadCLT extends QuadCLTCPU {
 		}
 	}
 
+	void setQuadClt() {
+		if (gpuQuad != null) {
+			gpuQuad.updateQuadCLT(this); // to re-load new set of Bayer images to the GPU
+		}
+	}
 	
 	public QuadCLT(QuadCLTCPU pq, String name) {
 		super (pq, name);

src/main/java/com/elphel/imagej/tileprocessor/QuadCLTCPU.java

@@ -222,9 +222,12 @@ public class QuadCLTCPU {
 		return null;
 	}
 	
-	void restoreQuadClt(QuadCLT savedQuadClt) {
+	void restoreQuadClt(QuadCLT savedQuadClt) { // do nothing
 	}
 
+	void setQuadClt() { // do nothing
+	}
+	
 	double [][][][][][]  getCltKernels() {                            
 		return clt_kernels;
 	}
@@ -937,10 +940,6 @@ public class QuadCLTCPU {
 	}	
 	
 	
-	
-	
-	
-	
 	public ImagePlus saveDoubleArrayInModelDirectory(
 			String      suffix,
 			String []   labels, // or null
@@ -959,6 +958,20 @@ public class QuadCLTCPU {
 		return imp;
 	}
 	
+	public void saveImagePlusInModelDirectory(
+			String      suffix,
+			ImagePlus   imp)
+	{
+		String x3d_path = getX3dDirectory();
+		String file_name = image_name + suffix;
+		String file_path = x3d_path + Prefs.getFileSeparator() + file_name + ".tiff";
+		FileSaver fs=new FileSaver(imp);
+		fs.saveAsTiff(file_path);
+		System.out.println("saveDoubleArrayInModelDirectory(): saved "+file_path);
+	}
+	
+	
+	
 	public double [][] readDoubleArrayFromModelDirectory(
 			String      suffix,
 			int         num_slices, // (0 - all)

src/main/java/com/elphel/imagej/tileprocessor/TwoQuadCLT.java

@@ -8518,6 +8518,7 @@ if (debugLevel > -100) return true; // temporarily !
 				// FIXME: *********** update adjustSeries to use QUADCLTCPU ! **********								
 //				(QuadCLT []) 
 				quadCLTs, // QuadCLT [] scenes, // ordered by increasing timestamps
+				ref_index, // int            ref_index,
 				clt_parameters.ofp.debug_level_optical); // 1); // -1); // int debug_level);
 		System.out.println("End of interSeriesLMA()");
 	}
@@ -9007,6 +9008,7 @@ if (debugLevel > -100) return true; // temporarily !
 
 	public void interIntraExportML(
 			QuadCLT                                              quadCLT_main, // tiles should be set
+			int                                                  indx_ref,     // = num_scenes - 1; 
 			CLTParameters                                        clt_parameters,
 			EyesisCorrectionParameters.DebayerParameters         debayerParameters,
 			ColorProcParameters                                  colorProcParameters,
@@ -9062,7 +9064,10 @@ if (debugLevel > -100) return true; // temporarily !
 		String [] sts = ref_only ? (new String [0]) : ers_reference.getScenes();
 		// get list of all other scenes
 		int num_scenes = sts.length + 1;
-		int indx_ref = num_scenes - 1; 
+//		int indx_ref = num_scenes - 1;
+		if (indx_ref < 0) {
+			indx_ref = num_scenes - 1;
+		}
 		QuadCLT [] scenes = new QuadCLT [num_scenes];
 		scenes[indx_ref] = ref_quadCLT;
 
@@ -11175,14 +11180,16 @@ if (debugLevel > -100) return true; // temporarily !
 			final int        debugLevel)  throws Exception
 	{
 		if ((quadCLT_main != null) && (quadCLT_main.getGPU() != null)) {
-			quadCLT_main.getGPU().resetGeometryCorrection();
-			quadCLT_main.gpuResetCorrVector(); // .getGPU().resetGeometryCorrectionVector();
-			quadCLT_main.resetBayer();
+			quadCLT_main.setQuadClt(); // ignore previous result,
+//			quadCLT_main.getGPU().resetGeometryCorrection();
+//			quadCLT_main.gpuResetCorrVector(); // .getGPU().resetGeometryCorrectionVector();
+//			quadCLT_main.resetBayer();
 		}
 		if ((quadCLT_aux != null) && (quadCLT_aux.getGPU() != null)) {
-			quadCLT_aux.getGPU().resetGeometryCorrection();
-			quadCLT_aux.gpuResetCorrVector(); // .getGPU().resetGeometryCorrectionVector();
-			quadCLT_aux.resetBayer();
+			quadCLT_aux.setQuadClt();
+//			quadCLT_aux.getGPU().resetGeometryCorrection();
+//			quadCLT_aux.gpuResetCorrVector(); // .getGPU().resetGeometryCorrectionVector();
+//			quadCLT_aux.resetBayer();
 		}
 
 		
@@ -11222,6 +11229,7 @@ if (debugLevel > -100) return true; // temporarily !
 			}
 
 			for (int nSet = 0; nSet < set_channels.length; nSet++){
+				/*
 				if ((quadCLT_main != null) && (quadCLT_main.getGPU() != null)) { //TODO:  is it needed here? WAs not needed before - verify
 					quadCLT_main.getGPU().resetGeometryCorrection();
 					quadCLT_main.gpuResetCorrVector(); // .getGPU().resetGeometryCorrectionVector();
@@ -11231,7 +11239,8 @@ if (debugLevel > -100) return true; // temporarily !
 					quadCLT_aux.getGPU().resetGeometryCorrection();
 					quadCLT_aux.gpuResetCorrVector(); // .getGPU().resetGeometryCorrectionVector();
 					quadCLT_aux.resetBayer();
-				}
+				}*/
+				
 				// nset -> name - n1, n2 (in 
 				String set_name = set_channels[nSet].set_name;
 				int nSet_main = -1, nSet_aux = -1;
@@ -11846,6 +11855,7 @@ if (debugLevel > -100) return true; // temporarily !
 //		System.out.println("batchLwirRig(): processing "+(quadCLT_main.getTotalFiles(set_channels_main)+quadCLT_aux.getTotalFiles(set_channels_aux))+" files ("+set_channels_main.length+" file sets) finished at "+
 		int num_main = (quadCLT_main==null)? 0 : quadCLT_main.getTotalFiles(set_channels_main);
 		int num_aux =  (quadCLT_aux ==null)? 0 : quadCLT_aux.getTotalFiles(set_channels_aux);
+		/*
 		if ((quadCLT_main != null) && (quadCLT_main.getGPU() != null)) { //TODO:  is it needed here? WAs not needed before - verify
 			quadCLT_main.getGPU().resetGeometryCorrection();
 			quadCLT_main.gpuResetCorrVector(); // .getGPU().resetGeometryCorrectionVector();
@@ -11856,6 +11866,7 @@ if (debugLevel > -100) return true; // temporarily !
 			quadCLT_aux.gpuResetCorrVector(); // .getGPU().resetGeometryCorrectionVector();
 			quadCLT_aux.resetBayer();
 		}
+		*/
 		// Process LWIR16 tasks applicable to scene series rather than individual scenes
 		if (quadCLT_main.correctionsParameters.clt_batch_pose_pairs_main) {
 			TestInterLMA(quadCLT_main,         // QUAD_CLT, // QuadCLT quadCLT_main,
@@ -11891,8 +11902,29 @@ if (debugLevel > -100) return true; // temporarily !
 					debugLevel);
 		}
 		
+		if (quadCLT_main.correctionsParameters.clt_batch_pose_scene_main) {
+			int ref_index = 50; // temporarily, will make evently distributed
+			interSeriesLMA(quadCLT_main,       // QUAD_CLT, // QuadCLT quadCLT_main,
+					ref_index,                 // int    ref_index,
+					clt_parameters,            // EyesisCorrectionParameters.DCTParameters dct_parameters,
+					debayerParameters,         // EyesisCorrectionParameters.DebayerParameters debayerParameters,
+					colorProcParameters,       // COLOR_PROC_PARAMETERS, //EyesisCorrectionParameters.ColorProcParameters
+											   // colorProcParameters,
+					channelGainParameters,     // CorrectionColorProc.ColorGainsParameters channelGainParameters,
+					rgbParameters,             // EyesisCorrectionParameters.RGBParameters rgbParameters,
+					equirectangularParameters, // EyesisCorrectionParameters.EquirectangularParameters
+											   // equirectangularParameters,
+					properties,                // Properties properties,
+					true,                      // false, // boolean reset_from_extrinsics,
+					threadsMax,                // final int threadsMax, // maximal number of threads to launch
+					updateStatus,              // final boolean updateStatus,
+					debugLevel);
+		}
+		
+		
 		if (quadCLT_main.correctionsParameters.clt_batch_ml_last_main) {
 			interIntraExportML(quadCLT_main,   // QuadCLT quadCLT_main,
+					-1, // use last // int  indx_ref,     // = num_scenes - 1; 
 					clt_parameters,            // EyesisCorrectionParameters.DCTParameters dct_parameters,
 					debayerParameters,         // EyesisCorrectionParameters.DebayerParameters debayerParameters,
 					colorProcParameters,       // EyesisCorrectionParameters.ColorProcParameters colorProcParameters,
@@ -11940,8 +11972,28 @@ if (debugLevel > -100) return true; // temporarily !
 					debugLevel);
 		}		
 		
+		if (quadCLT_main.correctionsParameters.clt_batch_pose_scene_aux) {
+			int ref_index = 50; // temporarily, will make evently distributed
+			interSeriesLMA(quadCLT_aux,        // QUAD_CLT, // QuadCLT quadCLT_main,
+					ref_index,                 // int    ref_index,
+					clt_parameters,            // EyesisCorrectionParameters.DCTParameters dct_parameters,
+					debayerParameters,         // EyesisCorrectionParameters.DebayerParameters debayerParameters,
+					colorProcParameters_aux,   // COLOR_PROC_PARAMETERS, //EyesisCorrectionParameters.ColorProcParameters
+											   // colorProcParameters,
+					channelGainParameters,     // CorrectionColorProc.ColorGainsParameters channelGainParameters,
+					rgbParameters,             // EyesisCorrectionParameters.RGBParameters rgbParameters,
+					equirectangularParameters, // EyesisCorrectionParameters.EquirectangularParameters
+										       // equirectangularParameters,
+					properties,                // Properties properties,
+					true,                      // false, // boolean reset_from_extrinsics,
+					threadsMax,                // final int threadsMax, // maximal number of threads to launch
+					updateStatus,              // final boolean updateStatus,
+					debugLevel);
+		}
+		
 		if (quadCLT_main.correctionsParameters.clt_batch_ml_last_aux) {
 			interIntraExportML(quadCLT_aux,    // QuadCLT quadCLT_main,
+					-1, // use last // int  indx_ref,     // = num_scenes - 1; 
 					clt_parameters,            // EyesisCorrectionParameters.DCTParameters dct_parameters,
 					debayerParameters,         // EyesisCorrectionParameters.DebayerParameters debayerParameters,
 					colorProcParameters_aux,   // EyesisCorrectionParameters.ColorProcParameters colorProcParameters,
@@ -11954,6 +12006,7 @@ if (debugLevel > -100) return true; // temporarily !
 					updateStatus,              // final boolean updateStatus,
 					debugLevel);
 		}
+		/*
 		if ((quadCLT_main != null) && (quadCLT_main.getGPU() != null)) { //TODO:  is it needed here? WAs not needed before - verify
 			quadCLT_main.getGPU().resetGeometryCorrection();
 			quadCLT_main.gpuResetCorrVector(); // .getGPU().resetGeometryCorrectionVector();
@@ -11964,6 +12017,7 @@ if (debugLevel > -100) return true; // temporarily !
 			quadCLT_aux.gpuResetCorrVector(); // .getGPU().resetGeometryCorrectionVector();
 			quadCLT_aux.resetBayer();
 		}
+		*/
 
 		System.out.println("batchLwirRig(): processing "+(num_main + num_aux)+" files ("+set_channels.length+" file sets) finished at "+
 				IJ.d2s(0.000000001*(System.nanoTime()-this.startTime),3)+" sec, --- Free memory="+Runtime.getRuntime().freeMemory()+" (of "+Runtime.getRuntime().totalMemory()+")");