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Commit 89ea8734 authored by Andrey Filippov's avatar Andrey Filippov
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saving target tilts

parent f0ed3a2b
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Showing with 30 additions and 15 deletions
src/main/java/FocusingField.java
View file @ 89ea8734
......@@ -106,6 +106,8 @@ public class FocusingField {
double tStep;
double targetRelFocalShift; // target focal shift relative to best composite "sharpness"
double targetRelTiltX; // target tilt Horizontal
double targetRelTiltY; // target tilt Vertical
// when false - tangential is master
double [] minMeas; // pixels
......@@ -292,7 +294,9 @@ public class FocusingField {
tMax= 10.0;
tStep=2.0;
targetRelFocalShift=8.0; // target focal shift relative to best composite "sharpness"
targetRelFocalShift=0.0; // target focal shift relative to best composite "sharpness"
targetRelTiltX=0.0; // target tilt Horizontal
targetRelTiltY=0.0; // target tilt Vertical
// when false - tangential is master
double [] minMeasDflt= {0.5,0.5,0.5,0.5,0.5,0.5}; // pixels
minMeas= minMeasDflt; // pixels
......@@ -446,6 +450,10 @@ public class FocusingField {
properties.setProperty(prefix+"tStep",tStep+"");
properties.setProperty(prefix+"targetRelFocalShift",targetRelFocalShift+"");
properties.setProperty(prefix+"targetRelTiltX",targetRelTiltX+"");
properties.setProperty(prefix+"targetRelTiltY",targetRelTiltY+"");
for (int chn=0; chn<minMeas.length; chn++) properties.setProperty(prefix+"minMeas_"+chn,minMeas[chn]+"");
for (int chn=0; chn<maxMeas.length; chn++) properties.setProperty(prefix+"maxMeas_"+chn,maxMeas[chn]+"");
for (int chn=0; chn<thresholdMax.length; chn++) properties.setProperty(prefix+"thresholdMax_"+chn,thresholdMax[chn]+"");
......@@ -607,6 +615,12 @@ public class FocusingField {
tStep=Double.parseDouble(properties.getProperty(prefix+"tStep"));
if (properties.getProperty(prefix+"targetRelFocalShift")!=null)
targetRelFocalShift=Double.parseDouble(properties.getProperty(prefix+"targetRelFocalShift"));
if (properties.getProperty(prefix+"targetRelTiltX")!=null)
targetRelTiltX=Double.parseDouble(properties.getProperty(prefix+"targetRelTiltX"));
if (properties.getProperty(prefix+"targetRelTiltY")!=null)
targetRelTiltY=Double.parseDouble(properties.getProperty(prefix+"targetRelTiltY"));
for (int chn=0; chn<minMeas.length; chn++) if (properties.getProperty(prefix+"minMeas_"+chn)!=null)
minMeas[chn]=Double.parseDouble(properties.getProperty(prefix+"minMeas_"+chn));
for (int chn=0; chn<maxMeas.length; chn++) if (properties.getProperty(prefix+"maxMeas_"+chn)!=null)
......@@ -4815,8 +4829,8 @@ public boolean LevenbergMarquardt(
// double zMin=-40.0;
// double zMax= 40.0;
// double zStep=2.0;
double targetTiltX=0.0; // for testing, normally should be 0 um/mm
double targetTiltY=0.0; // for testing, normally should be 0 um/mm
// double targetTiltX=0.0; // for testing, normally should be 0 um/mm
// double targetTiltY=0.0; // for testing, normally should be 0 um/mm
// fieldFitting.mechanicalFocusingModel.setZTxTy(0.0,0.0,0.0); // to correctly find Z centers,
fieldFitting.mechanicalFocusingModel.setAdjustMode(false); // to correctly find Z centers,
......@@ -4872,8 +4886,9 @@ public boolean LevenbergMarquardt(
gd.addNumericField("Tilt step",tStep,2,5,"um/mm");
gd.addNumericField("Target focus (relative to best composirte)",targetRelFocalShift,2,5,"um");
gd.addNumericField("Target horizontal tilt (normally 0)",targetTiltX,2,5,"um/mm");
gd.addNumericField("Target vertical tilt (normally 0)",targetTiltY,2,5,"um/mm");
gd.addNumericField("Target horizontal tilt (normally 0)",targetRelTiltX,2,5,"um/mm");
gd.addNumericField("Target vertical tilt (normally 0)",targetRelTiltY,2,5,"um/mm");
WindowTools.addScrollBars(gd);
gd.showDialog();
if (gd.wasCanceled()) return;
......@@ -4902,8 +4917,8 @@ public boolean LevenbergMarquardt(
tStep= gd.getNextNumber();
targetRelFocalShift= gd.getNextNumber();
targetTiltX= gd.getNextNumber(); // for testing, normally should be 0 um/mm
targetTiltY= gd.getNextNumber(); // for testing, normally should be 0 um/mm
targetRelTiltX= gd.getNextNumber(); // for testing, normally should be 0 um/mm
targetRelTiltY= gd.getNextNumber(); // for testing, normally should be 0 um/mm
boolean OK;
fieldFitting.mechanicalFocusingModel.setAdjustMode(true); // to correctly find Z centers,
......@@ -4956,8 +4971,8 @@ public boolean LevenbergMarquardt(
double [] dmz= getAdjustedMotors(
null, // double [] zM0, // current linearized motors (or null for full adjustment)
targetRelFocalShift+best_qb_corr[0],
targetTiltX, // for testing, normally should be 0 um/mm
targetTiltY,
targetRelTiltX, // for testing, normally should be 0 um/mm
targetRelTiltY,
false);
if ((dmz!=null) && (debugLevel>0)){
System.out.println("Suggested motor linearized positions: "+IJ.d2s(dmz[0],2)+":"+IJ.d2s(dmz[1],2)+":"+IJ.d2s(dmz[2],2));
......@@ -4965,8 +4980,8 @@ public boolean LevenbergMarquardt(
double [] dm= getAdjustedMotors(
null, // double [] zM0, // current linearized motors (or null for full adjustment)
targetRelFocalShift+best_qb_corr[0],
targetTiltX, // for testing, normally should be 0 um/mm
targetTiltY,
targetRelTiltX, // for testing, normally should be 0 um/mm
targetRelTiltY,
true);
if ((dm!=null) && (debugLevel>0)){
System.out.println("Suggested motor positions: "+IJ.d2s(dm[0],0)+":"+IJ.d2s(dm[1],0)+":"+IJ.d2s(dm[2],0));
......@@ -5028,8 +5043,8 @@ public boolean LevenbergMarquardt(
double [] dmz= getAdjustedMotors(
null, // double [] zM0, // current linearized motors (or null for full adjustment)
targetRelFocalShift+best_qb_corr[0],
targetTiltX, // for testing, normally should be 0 um/mm
targetTiltY,
targetRelTiltX, // for testing, normally should be 0 um/mm
targetRelTiltY,
false);
if ((dmz!=null) && (debugLevel>0)){
System.out.println("Suggested motor linearized positions: "+IJ.d2s(dmz[0],2)+":"+IJ.d2s(dmz[1],2)+":"+IJ.d2s(dmz[2],2));
......@@ -5037,8 +5052,8 @@ public boolean LevenbergMarquardt(
double [] dm= getAdjustedMotors(
null, // double [] zM0, // current linearized motors (or null for full adjustment)
targetRelFocalShift+best_qb_corr[0],
targetTiltX, // for testing, normally should be 0 um/mm
targetTiltY,
targetRelTiltX, // for testing, normally should be 0 um/mm
targetRelTiltY,
true);
if ((dm!=null) && (debugLevel>0)){
System.out.println("Suggested motor positions: "+IJ.d2s(dm[0],0)+":"+IJ.d2s(dm[1],0)+":"+IJ.d2s(dm[2],0));
......
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