Update generation of TIFF sequence subtracting new averages from the CLT

src/main/java/com/elphel/imagej/tileprocessor/IntersceneMatchParameters.java

@@ -737,6 +737,7 @@ min_str_neib_fpn	0.35
 	public  boolean um_mono =            true; // applies to both TIFF and AVI 
 	public  double  um_sigma =          10;
 	public  double  um_weight =          0.97; //
+	public  boolean um_mono_linear =     true; // save linear (no-UM) in addition to UM
 	public  boolean mono_fixed =         true; // normalize to fixed range when converting to 8 bits 
 	public  double  mono_range =       500.0;  // monochrome full-scale range (+/- half)
 	public  boolean anaglyth_en =        true; // applies to both TIFF and AVI 
@@ -2140,6 +2141,8 @@ min_str_neib_fpn	0.35
 				"Unsharp mask Gaussian sigma.");
 		gd.addNumericField("Unsharp mask weight",                    this.um_weight, 5,7,"",
 				"Unsharp mask weightt (multiply blurred version before subtraction from the original).");
+		gd.addCheckbox ("Save linear",                               this.um_mono_linear,
+				"Save TIFF sequences without UM in addition to UM");
 		
 		gd.addCheckbox ("Fixed monochrome range",                    this.mono_fixed,
 				"Normalize monochrome (after UM) to a fixed range when converting to 8 bit RGB.");
@@ -2964,6 +2967,7 @@ min_str_neib_fpn	0.35
 		this.um_mono =                  gd.getNextBoolean();
 		this.um_sigma =                 gd.getNextNumber();
 		this.um_weight =                gd.getNextNumber();
+		this.um_mono_linear =           gd.getNextBoolean();
 		this.mono_fixed =               gd.getNextBoolean();
 		this.mono_range =               gd.getNextNumber();
 		
@@ -3783,6 +3787,7 @@ min_str_neib_fpn	0.35
 		properties.setProperty(prefix+"um_mono",              this.um_mono+"");             // boolean
 		properties.setProperty(prefix+"um_sigma",             this.um_sigma+"");            // double
 		properties.setProperty(prefix+"um_weight",            this.um_weight+"");           // double
+		properties.setProperty(prefix+"um_mono_linear",       this.um_mono_linear+"");      // boolean
 		properties.setProperty(prefix+"mono_fixed",           this.mono_fixed+"");          // boolean
 		properties.setProperty(prefix+"mono_range",           this.mono_range+"");          // double
 		properties.setProperty(prefix+"anaglyth_en",          this.anaglyth_en+"");         // boolean
@@ -4584,6 +4589,7 @@ min_str_neib_fpn	0.35
 		if (properties.getProperty(prefix+"um_mono")!=null)              this.um_mono=Boolean.parseBoolean(properties.getProperty(prefix+"um_mono"));
 		if (properties.getProperty(prefix+"um_sigma")!=null)             this.um_sigma=Double.parseDouble(properties.getProperty(prefix+"um_sigma"));
 		if (properties.getProperty(prefix+"um_weight")!=null)            this.um_weight=Double.parseDouble(properties.getProperty(prefix+"um_weight"));
+		if (properties.getProperty(prefix+"um_mono_linear")!=null)       this.um_mono_linear=Boolean.parseBoolean(properties.getProperty(prefix+"um_mono_linear"));
 		if (properties.getProperty(prefix+"mono_fixed")!=null)           this.mono_fixed=Boolean.parseBoolean(properties.getProperty(prefix+"mono_fixed"));
 		if (properties.getProperty(prefix+"mono_range")!=null)           this.mono_range=Double.parseDouble(properties.getProperty(prefix+"mono_range"));
 		
@@ -5368,35 +5374,36 @@ min_str_neib_fpn	0.35
 		imp.sensor_mask           = this.sensor_mask;
 		imp.merge_all             = this.merge_all;
 
-		imp.video_fps =             this. video_fps;
-		imp.sensor_fps =            this. sensor_fps;
-		imp.mode_avi =              this. mode_avi;
-		imp.avi_JPEG_quality =      this. avi_JPEG_quality;
-		imp.run_ffmpeg =            this. run_ffmpeg;
-		imp.video_ext =             this. video_ext;
-		imp.video_codec =           this. video_codec;
-		imp.video_crf =             this. video_crf;
-		imp.remove_avi =            this. remove_avi;
-		imp.video_codec_combo =     this. video_codec_combo;
-		imp.video_crf_combo =       this. video_crf_combo;
-		imp.add_average =           this. add_average;
-		imp.subtract_average =      this. subtract_average;
-		imp.running_average =       this. running_average;
+		imp.video_fps =             this.video_fps;
+		imp.sensor_fps =            this.sensor_fps;
+		imp.mode_avi =              this.mode_avi;
+		imp.avi_JPEG_quality =      this.avi_JPEG_quality;
+		imp.run_ffmpeg =            this.run_ffmpeg;
+		imp.video_ext =             this.video_ext;
+		imp.video_codec =           this.video_codec;
+		imp.video_crf =             this.video_crf;
+		imp.remove_avi =            this.remove_avi;
+		imp.video_codec_combo =     this.video_codec_combo;
+		imp.video_crf_combo =       this.video_crf_combo;
+		imp.add_average =           this.add_average;
+		imp.subtract_average =      this.subtract_average;
+		imp.running_average =       this.running_average;
 		imp.extract_center_orientation=this.extract_center_orientation;
-		imp.um_mono =               this. um_mono;
-		imp.um_sigma =              this. um_sigma;
-		imp.um_weight =             this. um_weight;
-		imp.mono_fixed =            this. mono_fixed;
-		imp.mono_range =            this. mono_range;
-		
-		imp.anaglyth_en =           this. anaglyth_en;
-		imp.anaglyph_left =         this. anaglyph_left;
-		imp.anaglyph_right =        this. anaglyph_right;
-		
-		imp.annotate_color =        this. annotate_color;
-		imp.annotate_mono =         this. annotate_mono;
-		imp.annotate_color_color =  this. annotate_color_color;
-		imp.annotate_color_mono =   this. annotate_color_mono;
+		imp.um_mono =               this.um_mono;
+		imp.um_sigma =              this.um_sigma;
+		imp.um_weight =             this.um_weight;
+		imp.um_mono_linear =        this.um_mono_linear;
+		imp.mono_fixed =            this.mono_fixed;
+		imp.mono_range =            this.mono_range;
+		
+		imp.anaglyth_en =           this.anaglyth_en;
+		imp.anaglyph_left =         this.anaglyph_left;
+		imp.anaglyph_right =        this.anaglyph_right;
+		
+		imp.annotate_color =        this.annotate_color;
+		imp.annotate_mono =         this.annotate_mono;
+		imp.annotate_color_color =  this.annotate_color_color;
+		imp.annotate_color_mono =   this.annotate_color_mono;
 		imp.annotate_transparent_mono = this. annotate_transparent_mono;
 		
 		// vegetation

src/main/java/com/elphel/imagej/tileprocessor/QuadCLTCPU.java

@@ -222,6 +222,17 @@ public class QuadCLTCPU {
     @Deprecated
     public boolean     center_is_parent =     false; // when true - use image_path that discards current version
     public String      center_parent_dir =    null;
+    public ImagePlus   imp_center_average =  null;
+    
+    
+    public ImagePlus   getCenterAverage() {
+    	return imp_center_average;
+    }
+    
+    public void setCenterAverage(ImagePlus imp_center_average) {
+    	this.imp_center_average = imp_center_average;
+    }
+    
     
     @Deprecated
     public boolean isCenterParent() {