Implemented saving of pixel defects to the sensor calibration files

src/main/java/Aberration_Calibration.java

@@ -9748,6 +9748,9 @@ if (MORE_BUTTONS) {
 				DEBUG_LEVEL);
 		boolean showImages=false;
 		boolean saveImages=true; // not yet implemented
+		//Defect [][] 
+		SFEPhases.Defect[][] defectList=null;
+		do {
 			if (interactive){
 				GenericDialog gd= new GenericDialog("accummulateImages");
 				gd.addCheckbox    ("Show accumulated images", showImages);
@@ -9759,9 +9762,6 @@ if (MORE_BUTTONS) {
 			}
 			if (showImages) for (ImagePlus imp:accImages) if (imp!=null) imp.show();
 //		 SFEPhases sfe_phases= new SFEPhases();
-		SFEPhases.Defect[][] defectList=null;
-		//Defect [][] 
-		do {
 			defectList=	(new SFEPhases()).interactiveExtractDefectListsFromAccumulatedImages(
 					accImages,
 					128,  // tileClearSize,
@@ -9779,6 +9779,8 @@ if (MORE_BUTTONS) {
 					5.0,  // gapWidth2, // absolute
 					true, // processHot,
 					true, // processCold,
+					true,  // updateSensorCalibrationFiles
+					false,  // clearDefects, // clear defects if none detected
 					new MatchSimulatedPattern(DISTORTION.FFTSize), //matchSimulatedPattern= 
 					COMPONENTS,
 					THREADS_MAX,