Commit 4bfd5679 authored by Andrey Filippov's avatar Andrey Filippov
Browse files

Implemented saving of pixel defects to the sensor calibration files

parent 7d18fb0e

src/main/java/Aberration_Calibration.java

+14 −12
Original line number Original line Diff line number Diff line
@@ -9748,6 +9748,9 @@ if (MORE_BUTTONS) { 
				DEBUG_LEVEL);

				DEBUG_LEVEL);

		boolean showImages=false;

		boolean showImages=false;

		boolean saveImages=true; // not yet implemented

		boolean saveImages=true; // not yet implemented

		//Defect [][] 

		SFEPhases.Defect[][] defectList=null;

		do {

			if (interactive){

			if (interactive){

				GenericDialog gd= new GenericDialog("accummulateImages");

				GenericDialog gd= new GenericDialog("accummulateImages");

				gd.addCheckbox    ("Show accumulated images", showImages);

				gd.addCheckbox    ("Show accumulated images", showImages);
@@ -9759,9 +9762,6 @@ if (MORE_BUTTONS) { 
			}

			}

			if (showImages) for (ImagePlus imp:accImages) if (imp!=null) imp.show();

			if (showImages) for (ImagePlus imp:accImages) if (imp!=null) imp.show();

//		 SFEPhases sfe_phases= new SFEPhases();

//		 SFEPhases sfe_phases= new SFEPhases();

		SFEPhases.Defect[][] defectList=null;

		//Defect [][] 

		do {

			defectList=	(new SFEPhases()).interactiveExtractDefectListsFromAccumulatedImages(

			defectList=	(new SFEPhases()).interactiveExtractDefectListsFromAccumulatedImages(

					accImages,

					accImages,

					128,  // tileClearSize,

					128,  // tileClearSize,
@@ -9779,6 +9779,8 @@ if (MORE_BUTTONS) { 
					5.0,  // gapWidth2, // absolute

					5.0,  // gapWidth2, // absolute

					true, // processHot,

					true, // processHot,

					true, // processCold,

					true, // processCold,

					true,  // updateSensorCalibrationFiles

					false,  // clearDefects, // clear defects if none detected

					new MatchSimulatedPattern(DISTORTION.FFTSize), //matchSimulatedPattern= 

					new MatchSimulatedPattern(DISTORTION.FFTSize), //matchSimulatedPattern= 

					COMPONENTS,

					COMPONENTS,

					THREADS_MAX,

					THREADS_MAX,