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Commit 4282653c authored by Andrey Filippov's avatar Andrey Filippov
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Added scene sequence processing and ML generation to LWIR batch

parent 8814cdd9
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Showing with 759 additions and 554 deletions
src/main/java/com/elphel/imagej/cameras/EyesisCorrectionParameters.java
View file @ 4282653c
......@@ -163,8 +163,21 @@ public class EyesisCorrectionParameters {
public boolean clt_batch_dsi_aux = false; // Calculate and save aux camera DSI (currently it is offset from the main/rig data
public boolean clt_batch_dsi_aux_full=false; // more than just preExpandCLTQuad3d() (same as for Lazy Eye
public boolean clt_batch_save_extrinsics = true; // Save cameras extrinsic parameters with the model
public boolean clt_batch_save_all = true; // Save all parameters with the model
public boolean clt_batch_save_all = true; // Save all parameters with the model
public boolean clt_batch_skip_scenes = false; // Skip all per-scene processing, go directly to processing sequences
public boolean clt_batch_pose_pairs_main = false; // calculate pair-wise camera poses
public boolean clt_batch_pose_last_main = false; // calculate camera poses realtive to the last scene
public boolean clt_batch_pose_scene_main = false; // calculate camera poses relative to all other ones
public boolean clt_batch_ml_last_main = false; // export ML files for the last (reference scene)
public boolean clt_batch_ml_all_main = false; // export ML files for all available reference scenes
public boolean clt_batch_pose_pairs_aux = false; // calculate pair-wise camera poses
public boolean clt_batch_pose_last_aux = false; // calculate camera poses realtive to the last scene
public boolean clt_batch_pose_scene_aux = false; // calculate camera poses relative to all other ones
public boolean clt_batch_ml_last_aux = false; // export ML files for the last (reference scene)
public boolean clt_batch_ml_all_aux = false; // export ML files for all available reference scenes
public String x3dModelVersion="v01";
......@@ -307,6 +320,20 @@ public class EyesisCorrectionParameters {
cp.clt_batch_save_extrinsics= this.clt_batch_save_extrinsics;
cp.clt_batch_save_all= this.clt_batch_save_all;
cp.clt_batch_skip_scenes= this.clt_batch_skip_scenes;
cp.clt_batch_pose_pairs_main= this.clt_batch_pose_pairs_main;
cp.clt_batch_pose_last_main= this.clt_batch_pose_last_main;
cp.clt_batch_pose_scene_main= this.clt_batch_pose_scene_main;
cp.clt_batch_ml_last_main= this.clt_batch_ml_last_main;
cp.clt_batch_ml_all_main= this.clt_batch_ml_all_main;
cp.clt_batch_pose_pairs_aux= this.clt_batch_pose_pairs_aux;
cp.clt_batch_pose_last_aux= this.clt_batch_pose_last_aux;
cp.clt_batch_pose_scene_aux= this.clt_batch_pose_scene_aux;
cp.clt_batch_ml_last_aux= this.clt_batch_ml_last_aux;
cp.clt_batch_ml_all_aux= this.clt_batch_ml_all_aux;
cp.thumb_overwrite = this.thumb_overwrite;
cp.thumb_width = this.thumb_width;
......@@ -488,6 +515,20 @@ public class EyesisCorrectionParameters {
properties.setProperty(prefix+"clt_batch_save_extrinsics", this.clt_batch_save_extrinsics+"");
properties.setProperty(prefix+"clt_batch_save_all", this.clt_batch_save_all+"");
properties.setProperty(prefix+"clt_batch_skip_scenes", this.clt_batch_skip_scenes+"");
properties.setProperty(prefix+"clt_batch_pose_pairs_main", this.clt_batch_pose_pairs_main+"");
properties.setProperty(prefix+"clt_batch_pose_last_main", this.clt_batch_pose_last_main+"");
properties.setProperty(prefix+"clt_batch_pose_scene_main", this.clt_batch_pose_scene_main+"");
properties.setProperty(prefix+"clt_batch_ml_last_main", this.clt_batch_ml_last_main+"");
properties.setProperty(prefix+"clt_batch_ml_all_main", this.clt_batch_ml_all_main+"");
properties.setProperty(prefix+"clt_batch_pose_pairs_aux", this.clt_batch_pose_pairs_aux+"");
properties.setProperty(prefix+"clt_batch_pose_last_aux", this.clt_batch_pose_last_aux+"");
properties.setProperty(prefix+"clt_batch_pose_scene_aux", this.clt_batch_pose_scene_aux+"");
properties.setProperty(prefix+"clt_batch_ml_last_aux", this.clt_batch_ml_last_aux+"");
properties.setProperty(prefix+"clt_batch_ml_all_aux", this.clt_batch_ml_all_aux+"");
properties.setProperty(prefix+"thumb_overwrite", this.thumb_overwrite+"");
properties.setProperty(prefix+"thumb_width", this.thumb_width+"");
properties.setProperty(prefix+"thumb_height", this.thumb_height+"");
......@@ -647,6 +688,20 @@ public class EyesisCorrectionParameters {
if (properties.getProperty(prefix+"clt_batch_save_extrinsics")!= null) this.clt_batch_save_extrinsics=Boolean.parseBoolean(properties.getProperty(prefix+"clt_batch_save_extrinsics"));
if (properties.getProperty(prefix+"clt_batch_save_all")!= null) this.clt_batch_save_all=Boolean.parseBoolean(properties.getProperty(prefix+"clt_batch_save_all"));
if (properties.getProperty(prefix+"clt_batch_skip_scenes")!= null) this.clt_batch_skip_scenes=Boolean.parseBoolean(properties.getProperty(prefix+"clt_batch_skip_scenes"));
if (properties.getProperty(prefix+"clt_batch_pose_pairs_main")!= null) this.clt_batch_pose_pairs_main=Boolean.parseBoolean(properties.getProperty(prefix+"clt_batch_pose_pairs_main"));
if (properties.getProperty(prefix+"clt_batch_pose_last_main")!= null) this.clt_batch_pose_last_main=Boolean.parseBoolean(properties.getProperty(prefix+"clt_batch_pose_last_main"));
if (properties.getProperty(prefix+"clt_batch_pose_scene_main")!= null) this.clt_batch_pose_scene_main=Boolean.parseBoolean(properties.getProperty(prefix+"clt_batch_pose_scene_main"));
if (properties.getProperty(prefix+"clt_batch_ml_last_main")!= null) this.clt_batch_ml_last_main=Boolean.parseBoolean(properties.getProperty(prefix+"clt_batch_ml_last_main"));
if (properties.getProperty(prefix+"clt_batch_ml_all_main")!= null) this.clt_batch_ml_all_main=Boolean.parseBoolean(properties.getProperty(prefix+"clt_batch_ml_all_main"));
if (properties.getProperty(prefix+"clt_batch_pose_pairs_aux")!= null) this.clt_batch_pose_pairs_aux=Boolean.parseBoolean(properties.getProperty(prefix+"clt_batch_pose_pairs_aux"));
if (properties.getProperty(prefix+"clt_batch_pose_last_aux")!= null) this.clt_batch_pose_last_aux=Boolean.parseBoolean(properties.getProperty(prefix+"clt_batch_pose_last_aux"));
if (properties.getProperty(prefix+"clt_batch_pose_scene_aux")!= null) this.clt_batch_pose_scene_aux=Boolean.parseBoolean(properties.getProperty(prefix+"clt_batch_pose_scene_aux"));
if (properties.getProperty(prefix+"clt_batch_ml_last_aux")!= null) this.clt_batch_ml_last_aux=Boolean.parseBoolean(properties.getProperty(prefix+"clt_batch_ml_last_aux"));
if (properties.getProperty(prefix+"clt_batch_ml_all_aux")!= null) this.clt_batch_ml_all_aux=Boolean.parseBoolean(properties.getProperty(prefix+"clt_batch_ml_all_aux"));
if (properties.getProperty(prefix+"thumb_overwrite")!= null) this.thumb_overwrite=Boolean.parseBoolean(properties.getProperty(prefix+"thumb_overwrite"));
if (properties.getProperty(prefix+"thumb_width")!=null) this.thumb_width=Integer.parseInt(properties.getProperty(prefix+"thumb_width"));
if (properties.getProperty(prefix+"thumb_height")!=null) this.thumb_height=Integer.parseInt(properties.getProperty(prefix+"thumb_height"));
......@@ -1018,7 +1073,7 @@ public class EyesisCorrectionParameters {
"Save main camera, dual-quad rig and optionally aux camera combo DSI image with the model");
gd.addCheckbox ("Include/genarate separate aux camera DSI data in the combo DSI", this.clt_batch_dsi_aux,
"8-rig: DSI for the AUX camera is offset (by the rig baseline) from the main and rig DSI. Aux DSI requires extra processing time."+
" EO+LWIR - generate a separate GT+AUX file");
"EO+LWIR - generate a separate GT+AUX file");
gd.addCheckbox ("Additional steps to calculate Aux DSI (more than for LY adjustment)", this.clt_batch_dsi_aux_full,
"(Not yet tested)");
......@@ -1028,7 +1083,32 @@ public class EyesisCorrectionParameters {
gd.addCheckbox ("Save all parameters with the model", this.clt_batch_save_all,
"Save a copy of all parameters with the model");
gd.addMessage ("============ LWIR16 processing ============");
gd.addCheckbox ("Skip scenes processing", this.clt_batch_skip_scenes,
"Skip all per-scene processing, go directly to processing sequences");
gd.addMessage ("============ RGB cameras ============");
gd.addCheckbox ("RGB: Calculate pair-wise camera poses", this.clt_batch_pose_pairs_main,
"RGB: Relative poses are calculated for pairs of consecututive scenes. Requires DSI for each scene");
gd.addCheckbox ("RGB: Scene poses relative to the last", this.clt_batch_pose_last_main,
"RGB: Relative camera poses to the reference (last) scene");
gd.addCheckbox ("RGB: Scene poses relative to others", this.clt_batch_pose_scene_main,
"RGB: Camera poses relative to all other scenes in the series, not just relative to the latest (not yet implemented)");
gd.addCheckbox ("RGB: Generate ML files for the last scene", this.clt_batch_ml_last_main,
"RGB: Generate ML output files for the last scene, requres 'Scene poses relative to the last'");
gd.addCheckbox ("RGB: Generate ML files for each scene", this.clt_batch_ml_all_main,
"RGB: Requires 'Scene poses relative to others', not yet implemented");
gd.addMessage ("============ LWIR cameras ============");
gd.addCheckbox ("LWIR: Calculate pair-wise camera poses", this.clt_batch_pose_pairs_aux,
"LWIR: Relative poses are calculated for pairs of consecututive scenes. Requires DSI for each scene");
gd.addCheckbox ("LWIR: Scene poses relative to the last", this.clt_batch_pose_last_aux,
"LWIR: Relative camera poses to the reference (last) scene");
gd.addCheckbox ("LWIR: Scene poses relative to others", this.clt_batch_pose_scene_aux,
"LWIR: Camera poses relative to all other scenes in the series, not just relative to the latest (not yet implemented)");
gd.addCheckbox ("LWIR: Generate ML files for the last scene", this.clt_batch_ml_last_aux,
"LWIR: Generate ML output files for the last scene, requres 'Scene poses relative to the last'");
gd.addCheckbox ("LWIR: Generate ML files for each scene", this.clt_batch_ml_all_aux,
"LWIR: Requires 'Scene poses relative to others', not yet implemented");
if (clt_parameters != null) {
// gd.addMessage ("============ selected CLT parameters ============");
......@@ -1114,12 +1194,27 @@ public class EyesisCorrectionParameters {
this.clt_batch_dsi_aux_full= gd.getNextBoolean();
this.clt_batch_save_extrinsics= gd.getNextBoolean();
this.clt_batch_save_all= gd.getNextBoolean();
this.clt_batch_skip_scenes= gd.getNextBoolean();
this.clt_batch_pose_pairs_main= gd.getNextBoolean();
this.clt_batch_pose_last_main= gd.getNextBoolean();
this.clt_batch_pose_scene_main= gd.getNextBoolean();
this.clt_batch_ml_last_main= gd.getNextBoolean();
this.clt_batch_ml_all_main= gd.getNextBoolean();
this.clt_batch_pose_pairs_aux= gd.getNextBoolean();
this.clt_batch_pose_last_aux= gd.getNextBoolean();
this.clt_batch_pose_scene_aux= gd.getNextBoolean();
this.clt_batch_ml_last_aux= gd.getNextBoolean();
this.clt_batch_ml_all_aux= gd.getNextBoolean();
if (clt_parameters != null) {
clt_parameters.grow_disp_max = gd.getNextNumber();
clt_parameters.gain_equalize = gd.getNextBoolean();
clt_parameters.z_correction = gd.getNextNumber();
clt_parameters.tsNumClust = (int) gd.getNextNumber();
clt_parameters.max_clusters = (int) gd.getNextNumber();
clt_parameters.grow_disp_max = gd.getNextNumber();
clt_parameters.gain_equalize = gd.getNextBoolean();
clt_parameters.z_correction = gd.getNextNumber();
clt_parameters.tsNumClust = (int) gd.getNextNumber();
clt_parameters.max_clusters = (int) gd.getNextNumber();
}
return true;
}
......
src/main/java/com/elphel/imagej/readers/ImagejJp4Tiff.java
View file @ 4282653c
......@@ -476,7 +476,7 @@ public class ImagejJp4Tiff {
Date startDate = dateFormat.parse(FIXCH6_EARLIEST);
Date endDate = dateFormat.parse(FIXCH6_LATEST);
Date fileDate = dateFormat.parse(sfdate);
if (fileDate.before(startDate) && fileDate.after(endDate)) {
if (fileDate.before(startDate) || fileDate.after(endDate)) {
return -3; // too early or too late
}
} catch (ParseException e) {
......
src/main/java/com/elphel/imagej/tileprocessor/OpticalFlow.java
View file @ 4282653c
......@@ -3289,6 +3289,7 @@ public class OpticalFlow {
clt_parameters.inp.show_final_2d, // final boolean show_2d_corr,
mcorr_sel, // final int mcorr_sel, // = Correlation2d.corrSelEncode(clt_parameters.img_dtt,scenes[nscene].getNumSensors());
null, // final float [][][] accum_2d_corr, // if [1][][] - return accumulated 2d correlations (all pairs)
false, // final boolean no_map, // do not generate disparity_map (time-consuming LMA)
debug_level-5); // final int debug_level)
Runtime.getRuntime().gc();
......@@ -3344,7 +3345,7 @@ public class OpticalFlow {
tilesX, // int width,
tilesY); // int height)
// save _DSI_INTER - sema format, as _DSI_MAIN, it will be used instead of _DSI_MAIN next time
// save _DSI_INTER - same format, as _DSI_MAIN, it will be used instead of _DSI_MAIN next time
double [][] dsi = new double [TwoQuadCLT.DSI_SLICES.length][];
dsi[ref_scene.is_aux?TwoQuadCLT.DSI_DISPARITY_AUX:TwoQuadCLT.DSI_DISPARITY_MAIN] = combo_dsn_change[0];
dsi[ref_scene.is_aux?TwoQuadCLT.DSI_STRENGTH_AUX:TwoQuadCLT.DSI_STRENGTH_MAIN] = combo_dsn_change[1];
......@@ -3895,6 +3896,7 @@ public class OpticalFlow {
( nrefine == (max_refines - 1)) && clt_parameters.inp.show_final_2d, // final boolean show_2d_corr,
mcorr_sel, // final int mcorr_sel, // =
null, // final float [][][] accum_2d_corr, // if [1][][] - return accumulated 2d correlations (all pairs)
false, // final boolean no_map, // do not generate disparity_map (time-consuming LMA)
debug_level-8); // final int debug_level)
if (debug_level > 0) {
......@@ -4060,6 +4062,7 @@ public class OpticalFlow {
false, // final boolean show_2d_corr,
mcorr_sel, // final int mcorr_sel, // =
facc_2d_img, // final float [][][] accum_2d_corr, // if [1][][] - return accumulated 2d correlations (all pairs)
true, // final boolean no_map, // do not generate disparity_map (time-consuming LMA)
debug_level-8); // final int debug_level)
float [][] corr_2d_img = facc_2d_img[0];
// double []
......@@ -4550,6 +4553,7 @@ public class OpticalFlow {
( nrefine == (max_refines - 1)) && clt_parameters.inp.show_final_2d, // final boolean show_2d_corr,
mcorr_sel, // final int mcorr_sel, // =
null, // final float [][][] accum_2d_corr, // if [1][][] - return accumulated 2d correlations (all pairs)
false, // final boolean no_map, // do not generate disparity_map (time-consuming LMA)
debug_level-5); // final int debug_level)
Runtime.getRuntime().gc();
......@@ -5762,6 +5766,7 @@ public double[][] correlateIntersceneDebug( // only uses GPU and quad
final boolean show_2d_corr,
final int mcorr_sel, // = Correlation2d.corrSelEncode(clt_parameters.img_dtt,scenes[nscene].getNumSensors());
final float [][][] accum_2d_corr, // if [1][][] - return accumulated 2d correlations (all pairs)
final boolean no_map, // do not generate disparity_map (time-consuming LMA)
final int debug_level
)
{
......@@ -5794,7 +5799,7 @@ public double[][] correlateIntersceneDebug( // only uses GPU and quad
}
image_dtt.getCorrelation2d(); // initiate image_dtt.correlation2d, needed if disparity_map != null
double[][] disparity_map = new double [image_dtt.getDisparityTitles().length][];
double[][] disparity_map = no_map ? null : new double [image_dtt.getDisparityTitles().length][];
final double disparity_corr = 0.00; // (z_correction == 0) ? 0.0 : geometryCorrection.getDisparityFromZ(1.0/z_correction);
TpTask[] tp_tasks_ref = null;
for (int nscene = 0; nscene < num_scenes; nscene++) {
......@@ -6192,10 +6197,10 @@ public double[][] correlateIntersceneDebug( // only uses GPU and quad
image_dtt.getCorrelation2d(); // initiate image_dtt.correlation2d, needed if disparity_map != null
double[][] disparity_map = new double [image_dtt.getDisparityTitles().length][];
// double[][] disparity_map = new double [image_dtt.getDisparityTitles().length][];
final double disparity_corr = 0.0; // (z_correction == 0) ? 0.0 : geometryCorrection.getDisparityFromZ(1.0/z_correction);
TpTask[] tp_tasks_ref = null;
String ts = ref_scene.getImageName();
// String ts = ref_scene.getImageName();
double [][] scene_pXpYD;
// transform to self - maybe use a method that sets central points
scene_pXpYD = transformToScenePxPyD(
......@@ -6269,7 +6274,7 @@ public double[][] correlateIntersceneDebug( // only uses GPU and quad
dcorr_tiles, // final double [][][] dcorr_tiles, // [tile][pair][(2*transform_size-1)*(2*transform_size-1)] // if null - will not calculate
// When clt_mismatch is non-zero, no far objects extraction will be attempted
//optional, may be null
disparity_map, // final double [][] disparity_map, // [8][tilesY][tilesX], only [6][] is needed on input or null - do not calculate
null, // disparity_map, // final double [][] disparity_map, // [8][tilesY][tilesX], only [6][] is needed on input or null - do not calculate
clt_parameters.correlate_lma, // final boolean run_lma, // calculate LMA, false - CM only
// define combining of all 2D correlation pairs for CM (LMA does not use them)
(add_combo ? clt_parameters.img_dtt.mcorr_comb_width : 0), //final int mcorr_comb_width, // combined correlation tile width (set <=0 to skip combined correlations)
......@@ -6324,7 +6329,7 @@ public double[][] correlateIntersceneDebug( // only uses GPU and quad
dcorr_tiles, // final double [][][] dcorr_tiles, // [tile][pair][(2*transform_size-1)*(2*transform_size-1)] // if null - will not calculate
// When clt_mismatch is non-zero, no far objects extraction will be attempted
//optional, may be null
disparity_map, // final double [][] disparity_map, // [8][tilesY][tilesX], only [6][] is needed on input or null - do not calculate
null, // disparity_map, // final double [][] disparity_map, // [8][tilesY][tilesX], only [6][] is needed on input or null - do not calculate
clt_parameters.correlate_lma, // final boolean run_lma, // calculate LMA, false - CM only
// last 2 - contrast, avg/ "geometric average)
clt_parameters.getGpuFatZero(ref_scene.isMonochrome()), // clt_parameters.getGpuFatZero(ref_scene.isMonochrome()), // final double afat_zero2, // gpu_fat_zero ==30? clt_parameters.getGpuFatZero(is_mono); absolute fat zero, same units as components squared values
......
src/main/java/com/elphel/imagej/tileprocessor/TwoQuadCLT.java
View file @ 4282653c
......@@ -9050,7 +9050,7 @@ if (debugLevel > -100) return true; // temporarily !
clt_parameters.inp.noise_debug_level // clt_parameters.ofp.debug_level_optical - 1); // 1); // -1); // int debug_level);
);
System.out.println("End of intersceneNoise()");
System.out.println("End of interIntraExportML()");
}
......@@ -11144,6 +11144,7 @@ if (debugLevel > -100) return true; // temporarily !
quadCLT_aux.gpuResetCorrVector(); // .getGPU().resetGeometryCorrectionVector();
}
// final boolean batch_mode = clt_parameters.batch_run;
// Reset dsi data (only 2 slices will be used)
this.dsi = new double [DSI_SLICES.length][];
......@@ -11152,6 +11153,9 @@ if (debugLevel > -100) return true; // temporarily !
final int debugLevelInner=clt_parameters.batch_run? -2: debugLevel;
this.startTime=System.nanoTime();
// if (quadCLT_main.correctionsParameters.clt_batch_skip_scenes) {
String [] sourceFiles=quadCLT_main.correctionsParameters.getSourcePaths();
QuadCLT.SetChannels [] set_channels_main = quadCLT_main.setChannels(debugLevel);
QuadCLT.SetChannels [] set_channels_aux = quadCLT_aux.setChannels(debugLevel);
......@@ -11164,287 +11168,288 @@ if (debugLevel > -100) return true; // temporarily !
System.out.println("No files to process (of "+sourceFiles.length+")");
return;
}
double [] referenceExposures_main = null;
double [] referenceExposures_aux = null;
// if (!colorProcParameters.lwir_islwir && !(set_channels_main == null)) {
if (!quadCLT_main.isLwir() && !(set_channels_main == null)) {
referenceExposures_main = quadCLT_main.eyesisCorrections.calcReferenceExposures(debugLevel);
}
// if (!colorProcParameters_aux.lwir_islwir && !(set_channels_aux == null)) {
if (!quadCLT_aux.isLwir() && !(set_channels_aux == null)) {
referenceExposures_aux = quadCLT_aux.eyesisCorrections.calcReferenceExposures(debugLevel);
}
for (int nSet = 0; nSet < set_channels.length; nSet++){
// nset -> name - n1, n2 (in
String set_name = set_channels[nSet].set_name;
int nSet_main = -1, nSet_aux = -1;
if (set_channels_main == set_channels) {
nSet_main = nSet;
} else if (set_channels_aux == set_channels) {
nSet_aux = nSet;
}
if ((nSet_main < 0) && (set_channels_main != null)) {
for (int ns = 0; ns < set_channels_main.length; ns++) if (set_name.equals(set_channels_main[ns].set_name)) {
nSet_main = ns;
break;
if (!quadCLT_main.correctionsParameters.clt_batch_skip_scenes) {
double [] referenceExposures_main = null;
double [] referenceExposures_aux = null;
// if (!colorProcParameters.lwir_islwir && !(set_channels_main == null)) {
if (!quadCLT_main.isLwir() && !(set_channels_main == null)) {
referenceExposures_main = quadCLT_main.eyesisCorrections.calcReferenceExposures(debugLevel);
}
// if (!colorProcParameters_aux.lwir_islwir && !(set_channels_aux == null)) {
if (!quadCLT_aux.isLwir() && !(set_channels_aux == null)) {
referenceExposures_aux = quadCLT_aux.eyesisCorrections.calcReferenceExposures(debugLevel);
}
for (int nSet = 0; nSet < set_channels.length; nSet++){
// nset -> name - n1, n2 (in
String set_name = set_channels[nSet].set_name;
int nSet_main = -1, nSet_aux = -1;
if (set_channels_main == set_channels) {
nSet_main = nSet;
} else if (set_channels_aux == set_channels) {
nSet_aux = nSet;
}
if ((nSet_main < 0) && (set_channels_main != null)) {
for (int ns = 0; ns < set_channels_main.length; ns++) if (set_name.equals(set_channels_main[ns].set_name)) {
nSet_main = ns;
break;
}
}
}
if ((nSet_aux < 0) && (set_channels_aux != null)) {
for (int ns = 0; ns < set_channels_aux.length; ns++) if (set_name.equals(set_channels_aux[ns].set_name)) {
nSet_aux = ns;
break;
if ((nSet_aux < 0) && (set_channels_aux != null)) {
for (int ns = 0; ns < set_channels_aux.length; ns++) if (set_name.equals(set_channels_aux[ns].set_name)) {
nSet_aux = ns;
break;
}
}
}
// int [] channelFiles_main = (set_channels_main==null)? null: set_channels_main[nSet].fileNumber();
// int [] channelFiles_aux = (set_channels_aux ==null)? null: set_channels_aux[nSet].fileNumber();
int [] channelFiles_main = (nSet_main < 0)? null: set_channels_main[nSet_main].fileNumber();
int [] channelFiles_aux = (nSet_aux < 0)? null: set_channels_aux[nSet_aux].fileNumber();
boolean [][] saturation_imp_main = ((channelFiles_main != null) && (clt_parameters.sat_level > 0.0))? new boolean[channelFiles_main.length][] : null;
boolean [][] saturation_imp_aux = ((channelFiles_aux != null) && (clt_parameters.sat_level > 0.0))? new boolean[channelFiles_aux.length][] : null;
double [] scaleExposures_main = (channelFiles_main != null) ? (new double[channelFiles_main.length]) : null;
double [] scaleExposures_aux = (channelFiles_aux != null) ? (new double[channelFiles_aux.length]) : null;
if (updateStatus) IJ.showStatus("Conditioning main camera image set for "+quadCLT_main.image_name);
ImagePlus [] imp_srcs_main = null;
if (nSet_main >=0 ) {quadCLT_main.conditionImageSet(
clt_parameters, // EyesisCorrectionParameters.CLTParameters clt_parameters,
colorProcParameters, // ColorProcParameters colorProcParameters, //
sourceFiles, // String [] sourceFiles,
set_channels_main[nSet_main].name(), // String set_name,
referenceExposures_main, // double [] referenceExposures,
channelFiles_main, // int [] channelFiles,
scaleExposures_main, //output // double [] scaleExposures
saturation_imp_main, //output // boolean [][] saturation_imp,
threadsMax, // int threadsMax,
debugLevelInner);
}// int debugLevel);
if (updateStatus) IJ.showStatus("Conditioning aux camera image set for "+quadCLT_main.image_name);
// optionally adjust main, aux (aux always will use main - calculate if needed
// Early main camera adjustment, rig data is not available
// with LWIR only 1 type of adjustments is possibkle - pre for main, post for aux. Combine configuration fields made for the 8-rig
int adjust_main = (quadCLT_main.correctionsParameters.rig_batch_adjust_main > quadCLT_main.correctionsParameters.rig_batch_adjust_main_gt)?
quadCLT_main.correctionsParameters.rig_batch_adjust_main : quadCLT_main.correctionsParameters.rig_batch_adjust_main_gt;
int adjust_aux = (quadCLT_main.correctionsParameters.rig_batch_adjust_aux > quadCLT_main.correctionsParameters.rig_batch_adjust_aux_gt)?
quadCLT_main.correctionsParameters.rig_batch_adjust_aux : quadCLT_main.correctionsParameters.rig_batch_adjust_aux_gt;
double [][] main_ds = null;
if (set_channels_main != null) {
for (int num_adjust_main = 0; num_adjust_main < adjust_main; num_adjust_main++) {
if (updateStatus) IJ.showStatus("Building basic DSI for the main camera image set "+quadCLT_main.image_name+
", pass "+(num_adjust_main+1)+" of "+adjust_main);
if (debugLevel > -5) {
System.out.println("Building basic DSI for the main camera image set "+quadCLT_main.image_name+
// int [] channelFiles_main = (set_channels_main==null)? null: set_channels_main[nSet].fileNumber();
// int [] channelFiles_aux = (set_channels_aux ==null)? null: set_channels_aux[nSet].fileNumber();
int [] channelFiles_main = (nSet_main < 0)? null: set_channels_main[nSet_main].fileNumber();
int [] channelFiles_aux = (nSet_aux < 0)? null: set_channels_aux[nSet_aux].fileNumber();
boolean [][] saturation_imp_main = ((channelFiles_main != null) && (clt_parameters.sat_level > 0.0))? new boolean[channelFiles_main.length][] : null;
boolean [][] saturation_imp_aux = ((channelFiles_aux != null) && (clt_parameters.sat_level > 0.0))? new boolean[channelFiles_aux.length][] : null;
double [] scaleExposures_main = (channelFiles_main != null) ? (new double[channelFiles_main.length]) : null;
double [] scaleExposures_aux = (channelFiles_aux != null) ? (new double[channelFiles_aux.length]) : null;
if (updateStatus) IJ.showStatus("Conditioning main camera image set for "+quadCLT_main.image_name);
ImagePlus [] imp_srcs_main = null;
if (nSet_main >=0 ) {quadCLT_main.conditionImageSet(
clt_parameters, // EyesisCorrectionParameters.CLTParameters clt_parameters,
colorProcParameters, // ColorProcParameters colorProcParameters, //
sourceFiles, // String [] sourceFiles,
set_channels_main[nSet_main].name(), // String set_name,
referenceExposures_main, // double [] referenceExposures,
channelFiles_main, // int [] channelFiles,
scaleExposures_main, //output // double [] scaleExposures
saturation_imp_main, //output // boolean [][] saturation_imp,
threadsMax, // int threadsMax,
debugLevelInner);
}// int debugLevel);
if (updateStatus) IJ.showStatus("Conditioning aux camera image set for "+quadCLT_main.image_name);
// optionally adjust main, aux (aux always will use main - calculate if needed
// Early main camera adjustment, rig data is not available
// with LWIR only 1 type of adjustments is possibkle - pre for main, post for aux. Combine configuration fields made for the 8-rig
int adjust_main = (quadCLT_main.correctionsParameters.rig_batch_adjust_main > quadCLT_main.correctionsParameters.rig_batch_adjust_main_gt)?
quadCLT_main.correctionsParameters.rig_batch_adjust_main : quadCLT_main.correctionsParameters.rig_batch_adjust_main_gt;
int adjust_aux = (quadCLT_main.correctionsParameters.rig_batch_adjust_aux > quadCLT_main.correctionsParameters.rig_batch_adjust_aux_gt)?
quadCLT_main.correctionsParameters.rig_batch_adjust_aux : quadCLT_main.correctionsParameters.rig_batch_adjust_aux_gt;
double [][] main_ds = null;
if (set_channels_main != null) {
for (int num_adjust_main = 0; num_adjust_main < adjust_main; num_adjust_main++) {
if (updateStatus) IJ.showStatus("Building basic DSI for the main camera image set "+quadCLT_main.image_name+
", pass "+(num_adjust_main+1)+" of "+adjust_main);
}
//Generates background image in model tree - should be done later, after adjustment (It is overwritten later, so OK)
quadCLT_main.preExpandCLTQuad3d( // returns ImagePlus, but it already should be saved/shown
imp_srcs_main, // [srcChannel], // should have properties "name"(base for saving results), "channel","path"
saturation_imp_main, // boolean [][] saturation_imp, // (near) saturated pixels or null
clt_parameters,
debayerParameters,
colorProcParameters,
rgbParameters,
threadsMax, // maximal number of threads to launch
updateStatus,
debugLevelInner);
// adjust extrinsics here
System.out.println("Adjust main extrinsics here");
if (updateStatus) IJ.showStatus("Adjusting main camera image set for "+quadCLT_main.image_name+
", pass "+(num_adjust_main+1)+" of "+adjust_main);
if (debugLevel > -5) {
System.out.println("Adjusting main camera image set for "+quadCLT_main.image_name+
if (debugLevel > -5) {
System.out.println("Building basic DSI for the main camera image set "+quadCLT_main.image_name+
", pass "+(num_adjust_main+1)+" of "+adjust_main);
}
//Generates background image in model tree - should be done later, after adjustment (It is overwritten later, so OK)
quadCLT_main.preExpandCLTQuad3d( // returns ImagePlus, but it already should be saved/shown
imp_srcs_main, // [srcChannel], // should have properties "name"(base for saving results), "channel","path"
saturation_imp_main, // boolean [][] saturation_imp, // (near) saturated pixels or null
clt_parameters,
debayerParameters,
colorProcParameters,
rgbParameters,
threadsMax, // maximal number of threads to launch
updateStatus,
debugLevelInner);
// adjust extrinsics here
System.out.println("Adjust main extrinsics here");
if (updateStatus) IJ.showStatus("Adjusting main camera image set for "+quadCLT_main.image_name+
", pass "+(num_adjust_main+1)+" of "+adjust_main);
}
if (debugLevel > -1){
int scan_index = quadCLT_main.tp.clt_3d_passes.size() -1;
quadCLT_main.tp.showScan(
quadCLT_main.tp.clt_3d_passes.get(scan_index), // CLTPass3d scan,
"pre-adjust-extrinsic-scan-"+scan_index); //String title)
for (int s = 0; (s < 5) && (s < scan_index); s++) {
if (debugLevel > -5) {
System.out.println("Adjusting main camera image set for "+quadCLT_main.image_name+
", pass "+(num_adjust_main+1)+" of "+adjust_main);
}
if (debugLevel > -1){
int scan_index = quadCLT_main.tp.clt_3d_passes.size() -1;
quadCLT_main.tp.showScan(
quadCLT_main.tp.clt_3d_passes.get(s), // CLTPass3d scan,
"pre-adjust-extrinsic-scan-"+s); //String title)
quadCLT_main.tp.clt_3d_passes.get(scan_index), // CLTPass3d scan,
"pre-adjust-extrinsic-scan-"+scan_index); //String title)
for (int s = 0; (s < 5) && (s < scan_index); s++) {
quadCLT_main.tp.showScan(
quadCLT_main.tp.clt_3d_passes.get(s), // CLTPass3d scan,
"pre-adjust-extrinsic-scan-"+s); //String title)
}
}
double inf_min = clt_parameters.ly_inf_min_broad; // -0.5;
double inf_max = clt_parameters.ly_inf_max_broad; // 0.5;
if (clt_parameters.ly_inf_force_fine || (num_adjust_main >= (adjust_main/2))) {
inf_min = clt_parameters.ly_inf_min_narrow; // -0.2;
inf_max = clt_parameters.ly_inf_max_narrow; // 0.05;
System.out.println("Late adjustment, using narrow band infinity detection, inf_min="+inf_min+", inf_max="+inf_max);
} else {
System.out.println("Early adjustment, using wide band infinity detection, inf_min="+inf_min+", inf_max="+inf_max);
}
boolean ok = quadCLT_main.extrinsicsCLT(
clt_parameters, // EyesisCorrectionParameters.CLTParameters clt_parameters,
false, // adjust_poly,
inf_min, // double inf_min,
inf_max, // double inf_max,
threadsMax, //final int threadsMax, // maximal number of threads to launch
updateStatus,// final boolean updateStatus,
debugLevelInner); // final int debugLevel)
// clear memory for main
quadCLT_main.tp.resetCLTPasses();
if (!ok) break;
}
double inf_min = clt_parameters.ly_inf_min_broad; // -0.5;
double inf_max = clt_parameters.ly_inf_max_broad; // 0.5;
if (clt_parameters.ly_inf_force_fine || (num_adjust_main >= (adjust_main/2))) {
inf_min = clt_parameters.ly_inf_min_narrow; // -0.2;
inf_max = clt_parameters.ly_inf_max_narrow; // 0.05;
System.out.println("Late adjustment, using narrow band infinity detection, inf_min="+inf_min+", inf_max="+inf_max);
} else {
System.out.println("Early adjustment, using wide band infinity detection, inf_min="+inf_min+", inf_max="+inf_max);
}
boolean ok = quadCLT_main.extrinsicsCLT(
clt_parameters, // EyesisCorrectionParameters.CLTParameters clt_parameters,
false, // adjust_poly,
inf_min, // double inf_min,
inf_max, // double inf_max,
threadsMax, //final int threadsMax, // maximal number of threads to launch
updateStatus,// final boolean updateStatus,
debugLevelInner); // final int debugLevel)
// clear memory for main
quadCLT_main.tp.resetCLTPasses();
if (!ok) break;
}
if (quadCLT_main.correctionsParameters.clt_batch_dsi1){
System.out.println("Trying experimental features DSI/ERS");
quadCLT_main.preExpandCLTQuad3d( // returns ImagePlus, but it already should be saved/shown
imp_srcs_main, // [srcChannel], // should have properties "name"(base for saving results), "channel","path"
saturation_imp_main, // boolean [][] saturation_imp, // (near) saturated pixels or null
clt_parameters,
debayerParameters,
colorProcParameters,
rgbParameters,
threadsMax, // maximal number of threads to launch
updateStatus,
debugLevelInner);
if (quadCLT_main.correctionsParameters.clt_batch_dsi1){
System.out.println("Trying experimental features DSI/ERS");
quadCLT_main.preExpandCLTQuad3d( // returns ImagePlus, but it already should be saved/shown
imp_srcs_main, // [srcChannel], // should have properties "name"(base for saving results), "channel","path"
saturation_imp_main, // boolean [][] saturation_imp, // (near) saturated pixels or null
clt_parameters,
debayerParameters,
colorProcParameters,
rgbParameters,
threadsMax, // maximal number of threads to launch
updateStatus,
debugLevelInner);
double [][] dsi_ly = quadCLT_main.filterByLY(
clt_parameters, // EyesisCorrectionParameters.CLTParameters clt_parameters,
clt_parameters.ly_inf_min_narrow, // double inf_min,
clt_parameters.ly_inf_max_narrow, // double inf_max,
threadsMax, //final int threadsMax, // maximal number of threads to launch
updateStatus,// final boolean updateStatus,
debugLevelInner); // final int debugLevel)
dsi[DSI_DISPARITY_MAIN] = dsi_ly[0];
dsi[DSI_STRENGTH_MAIN] = dsi_ly[1];
// if (quadCLT_main.correctionsParameters.clt_batch_dsi) { // Should be always enabled ?
quadCLT_main.saveDSIMain (dsi);
// }
// clear memory for main
quadCLT_main.tp.resetCLTPasses();
// copy regardless of ML generation
// See if it will copy all files, not just the main camera ones
if (clt_parameters.rig.ml_copyJP4) {
copyJP4src(
set_name, // String set_name
quadCLT_main, // QuadCLT quadCLT_main, // tiles should be set
quadCLT_aux, // QuadCLT quadCLT_aux,
clt_parameters, // EyesisCorrectionParameters.CLTParameters clt_parameters,
debugLevel); // final int debugLevel)
double [][] dsi_ly = quadCLT_main.filterByLY(
clt_parameters, // EyesisCorrectionParameters.CLTParameters clt_parameters,
clt_parameters.ly_inf_min_narrow, // double inf_min,
clt_parameters.ly_inf_max_narrow, // double inf_max,
threadsMax, //final int threadsMax, // maximal number of threads to launch
updateStatus,// final boolean updateStatus,
debugLevelInner); // final int debugLevel)
dsi[DSI_DISPARITY_MAIN] = dsi_ly[0];
dsi[DSI_STRENGTH_MAIN] = dsi_ly[1];
// if (quadCLT_main.correctionsParameters.clt_batch_dsi) { // Should be always enabled ?
quadCLT_main.saveDSIMain (dsi);
// }
// clear memory for main
quadCLT_main.tp.resetCLTPasses();
// copy regardless of ML generation
// See if it will copy all files, not just the main camera ones
if (clt_parameters.rig.ml_copyJP4) {
copyJP4src(
set_name, // String set_name
quadCLT_main, // QuadCLT quadCLT_main, // tiles should be set
quadCLT_aux, // QuadCLT quadCLT_aux,
clt_parameters, // EyesisCorrectionParameters.CLTParameters clt_parameters,
debugLevel); // final int debugLevel)
}
}
// Generate 4 main camera images and thumbnail
if (quadCLT_main.correctionsParameters.clt_batch_4img){
if (clt_parameters.gpu_use_main) {
if (updateStatus) IJ.showStatus("GPU: Rendering 4 image set (disparity = 0) for "+quadCLT_main.image_name+ "and a thumb nail");
quadCLT_main.processCLTQuadCorrGPU(
imp_srcs_main, // ImagePlus [] imp_quad,
saturation_imp_main, // boolean [][] saturation_imp, // (near) saturated pixels or null
clt_parameters, // CLTParameters clt_parameters,
debayerParameters, // EyesisCorrectionParameters.DebayerParameters debayerParameters,
colorProcParameters, // ColorProcParameters colorProcParameters,
channelGainParameters,
rgbParameters, // EyesisCorrectionParameters.RGBParameters rgbParameters,
scaleExposures_main, // double [] scaleExposures, // probably not needed here - restores brightness of the final image
false, // boolean only4slice,
threadsMax, // final int threadsMax, // maximal number of threads to launch
updateStatus, // final boolean updateStatus,
debugLevel); // final int debugLevel);
} else {
if (updateStatus) IJ.showStatus("CPU: Rendering 4 image set (disparity = 0) for "+quadCLT_main.image_name+ "and a thumb nail");
quadCLT_main.processCLTQuadCorrCPU( // returns ImagePlus, but it already should be saved/shown
// imp_srcs_main, // [srcChannel], // should have properties "name"(base for saving results), "channel","path"
saturation_imp_main, // boolean [][] saturation_imp, // (near) saturated pixels or null
clt_parameters,
debayerParameters,
colorProcParameters,
channelGainParameters,
rgbParameters,
scaleExposures_main,
false, // calculate and apply additional fine geometry correction
false, // calculate and apply geometry correction at infinity
threadsMax, // maximal number of threads to launch
updateStatus,
debugLevel);
}
quadCLT_main.tp.resetCLTPasses();
}
}
// Generate 4 main camera images and thumbnail
if (quadCLT_main.correctionsParameters.clt_batch_4img){
if (clt_parameters.gpu_use_main) {
if (updateStatus) IJ.showStatus("GPU: Rendering 4 image set (disparity = 0) for "+quadCLT_main.image_name+ "and a thumb nail");
quadCLT_main.processCLTQuadCorrGPU(
imp_srcs_main, // ImagePlus [] imp_quad,
saturation_imp_main, // boolean [][] saturation_imp, // (near) saturated pixels or null
clt_parameters, // CLTParameters clt_parameters,
debayerParameters, // EyesisCorrectionParameters.DebayerParameters debayerParameters,
colorProcParameters, // ColorProcParameters colorProcParameters,
channelGainParameters,
rgbParameters, // EyesisCorrectionParameters.RGBParameters rgbParameters,
scaleExposures_main, // double [] scaleExposures, // probably not needed here - restores brightness of the final image
false, // boolean only4slice,
threadsMax, // final int threadsMax, // maximal number of threads to launch
updateStatus, // final boolean updateStatus,
debugLevel); // final int debugLevel);
} else {
if (updateStatus) IJ.showStatus("CPU: Rendering 4 image set (disparity = 0) for "+quadCLT_main.image_name+ "and a thumb nail");
quadCLT_main.processCLTQuadCorrCPU( // returns ImagePlus, but it already should be saved/shown
// imp_srcs_main, // [srcChannel], // should have properties "name"(base for saving results), "channel","path"
if (quadCLT_main.correctionsParameters.clt_batch_explore) {
if (updateStatus) IJ.showStatus("Building basic DSI for the main camera image set "+quadCLT_main.image_name+" (after all adjustments)");
quadCLT_main.preExpandCLTQuad3d( // returns ImagePlus, but it already should be saved/shown
imp_srcs_main, // [srcChannel], // should have properties "name"(base for saving results), "channel","path"
saturation_imp_main, // boolean [][] saturation_imp, // (near) saturated pixels or null
clt_parameters,
debayerParameters,
colorProcParameters,
rgbParameters,
threadsMax, // maximal number of threads to launch
updateStatus,
debugLevelInner);
if (updateStatus) IJ.showStatus("Expanding DSI for the main camera image set "+quadCLT_main.image_name+" (after all adjustments)");
quadCLT_main.expandCLTQuad3d( // returns ImagePlus, but it already should be saved/shown
clt_parameters,
debayerParameters,
colorProcParameters,
channelGainParameters,
rgbParameters,
scaleExposures_main,
false, // calculate and apply additional fine geometry correction
false, // calculate and apply geometry correction at infinity
threadsMax, // maximal number of threads to launch
updateStatus,
debugLevel);
}
quadCLT_main.tp.resetCLTPasses();
}
if (quadCLT_main.correctionsParameters.clt_batch_explore) {
if (updateStatus) IJ.showStatus("Building basic DSI for the main camera image set "+quadCLT_main.image_name+" (after all adjustments)");
quadCLT_main.preExpandCLTQuad3d( // returns ImagePlus, but it already should be saved/shown
imp_srcs_main, // [srcChannel], // should have properties "name"(base for saving results), "channel","path"
saturation_imp_main, // boolean [][] saturation_imp, // (near) saturated pixels or null
clt_parameters,
debayerParameters,
colorProcParameters,
rgbParameters,
threadsMax, // maximal number of threads to launch
updateStatus,
debugLevelInner);
if (updateStatus) IJ.showStatus("Expanding DSI for the main camera image set "+quadCLT_main.image_name+" (after all adjustments)");
quadCLT_main.expandCLTQuad3d( // returns ImagePlus, but it already should be saved/shown
clt_parameters,
debayerParameters,
colorProcParameters,
channelGainParameters,
rgbParameters,
threadsMax, // maximal number of threads to launch
updateStatus,
debugLevel);
double [][] main_last_scan = quadCLT_main.tp.getShowDS(
quadCLT_main.tp.clt_3d_passes.get( quadCLT_main.tp.clt_3d_passes.size() -1),
false); // boolean force_final);
if (debugLevel > -1) { //-5){
int scan_index = quadCLT_main.tp.clt_3d_passes.size() -1;
quadCLT_main.tp.showScan(
quadCLT_main.tp.clt_3d_passes.get(scan_index), // CLTPass3d scan,
"test_pre-after-"+scan_index); //String title)
}
double [][] main_last_scan = quadCLT_main.tp.getShowDS(
quadCLT_main.tp.clt_3d_passes.get( quadCLT_main.tp.clt_3d_passes.size() -1),
false); // boolean force_final);
if (debugLevel > -1) { //-5){
int scan_index = quadCLT_main.tp.clt_3d_passes.size() -1;
quadCLT_main.tp.showScan(
quadCLT_main.tp.clt_3d_passes.get(scan_index), // CLTPass3d scan,
"test_pre-after-"+scan_index); //String title)
}
dsi[DSI_DISPARITY_MAIN] = main_last_scan[0];
dsi[DSI_STRENGTH_MAIN] = main_last_scan[1];
if (quadCLT_main.correctionsParameters.clt_batch_dsi) { // Should be always enabled ?
quadCLT_main.saveDSIMain (
dsi);
}
dsi[DSI_DISPARITY_MAIN] = main_last_scan[0];
dsi[DSI_STRENGTH_MAIN] = main_last_scan[1];
if (quadCLT_main.correctionsParameters.clt_batch_dsi) { // Should be always enabled ?
quadCLT_main.saveDSIMain (
dsi);
}
Runtime.getRuntime().gc();
System.out.println("--- Free memory="+Runtime.getRuntime().freeMemory()+" (of "+Runtime.getRuntime().totalMemory()+")");
if (quadCLT_main.correctionsParameters.clt_batch_surf) {
if (updateStatus) IJ.showStatus("Creating and filtering supertile plane surfaces from the DSI "+quadCLT_main.image_name);
quadCLT_main.tp.showPlanes(
clt_parameters,
quadCLT_main.geometryCorrection,
threadsMax,
updateStatus,
debugLevelInner);
Runtime.getRuntime().gc();
System.out.println("--- Free memory="+Runtime.getRuntime().freeMemory()+" (of "+Runtime.getRuntime().totalMemory()+")");
if (quadCLT_main.correctionsParameters.clt_batch_assign) {
if (updateStatus) IJ.showStatus("Assigning tiles to candidate surfaces "+quadCLT_main.image_name);
// prepare average RGBA for the last scan
quadCLT_main.setPassAvgRBGA( // get image from a single pass, return relative path for x3d // USED in lwir
clt_parameters, // CLTParameters clt_parameters,
quadCLT_main.tp.clt_3d_passes.size() - 1, // int scanIndex,
threadsMax, // int threadsMax, // maximal number of threads to launch
updateStatus, // boolean updateStatus,
debugLevelInner); // int debugLevel)
double [][] assignments_dbg = quadCLT_main.tp.assignTilesToSurfaces(
if (quadCLT_main.correctionsParameters.clt_batch_surf) {
if (updateStatus) IJ.showStatus("Creating and filtering supertile plane surfaces from the DSI "+quadCLT_main.image_name);
quadCLT_main.tp.showPlanes(
clt_parameters,
quadCLT_main.geometryCorrection,
threadsMax,
updateStatus,
debugLevelInner);
if (assignments_dbg == null) continue;
dsi[DSI_DISPARITY_X3D] = assignments_dbg[TileSurface.ASGN_A_DISP];
// TODO use assignments_dbg
// generate ML data if enabled
/*
if (quadCLT_main.correctionsParameters.clt_batch_assign) {
if (updateStatus) IJ.showStatus("Assigning tiles to candidate surfaces "+quadCLT_main.image_name);
// prepare average RGBA for the last scan
quadCLT_main.setPassAvgRBGA( // get image from a single pass, return relative path for x3d // USED in lwir
clt_parameters, // CLTParameters clt_parameters,
quadCLT_main.tp.clt_3d_passes.size() - 1, // int scanIndex,
threadsMax, // int threadsMax, // maximal number of threads to launch
updateStatus, // boolean updateStatus,
debugLevelInner); // int debugLevel)
double [][] assignments_dbg = quadCLT_main.tp.assignTilesToSurfaces(
clt_parameters,
quadCLT_main.geometryCorrection,
threadsMax,
updateStatus,
debugLevelInner);
if (assignments_dbg == null) continue;
dsi[DSI_DISPARITY_X3D] = assignments_dbg[TileSurface.ASGN_A_DISP];
// TODO use assignments_dbg
// generate ML data if enabled
/*
if (quadCLT_main.correctionsParameters.clt_batch_genMl) { // rig.ml_generate) { //clt_batch_genMl
outputMLData(
quadCLT_main, // QuadCLT quadCLT_main, // tiles should be set
......@@ -11455,139 +11460,231 @@ if (debugLevel > -100) return true; // temporarily !
updateStatus, // final boolean updateStatus,
debugLevel); // final int debugLevel)
}
*/
// copy regardless of ML generation
// See if it will copy all files, not just the main camera ones
if (clt_parameters.rig.ml_copyJP4) {
copyJP4src(
set_name, // String set_name
quadCLT_main, // QuadCLT quadCLT_main, // tiles should be set
quadCLT_aux, // QuadCLT quadCLT_aux,
clt_parameters, // EyesisCorrectionParameters.CLTParameters clt_parameters,
debugLevel); // final int debugLevel)
}
*/
// copy regardless of ML generation
// See if it will copy all files, not just the main camera ones
if (clt_parameters.rig.ml_copyJP4) {
copyJP4src(
set_name, // String set_name
quadCLT_main, // QuadCLT quadCLT_main, // tiles should be set
quadCLT_aux, // QuadCLT quadCLT_aux,
clt_parameters, // EyesisCorrectionParameters.CLTParameters clt_parameters,
debugLevel); // final int debugLevel)
}
if (quadCLT_main.correctionsParameters.clt_batch_gen3d) {
if (updateStatus) IJ.showStatus("Generating and exporting 3D scene model "+quadCLT_main.image_name);
boolean ok = quadCLT_main.output3d(
clt_parameters, // EyesisCorrectionParameters.CLTParameters clt_parameters,
colorProcParameters, // EyesisCorrectionParameters.ColorProcParameters colorProcParameters,
rgbParameters, // EyesisCorrectionParameters.RGBParameters rgbParameters,
threadsMax, // final int threadsMax, // maximal number of threads to launch
updateStatus, // final boolean updateStatus,
debugLevelInner); // final int debugLevel)
if (!ok) continue;
}
// save assigned disparity also? - with "-DSI_COMBO" suffix
if (quadCLT_main.correctionsParameters.clt_batch_dsi) {
quadCLT_main.saveDSI (
dsi);
}
if (quadCLT_main.correctionsParameters.clt_batch_gen3d) {
if (updateStatus) IJ.showStatus("Generating and exporting 3D scene model "+quadCLT_main.image_name);
boolean ok = quadCLT_main.output3d(
clt_parameters, // EyesisCorrectionParameters.CLTParameters clt_parameters,
colorProcParameters, // EyesisCorrectionParameters.ColorProcParameters colorProcParameters,
rgbParameters, // EyesisCorrectionParameters.RGBParameters rgbParameters,
threadsMax, // final int threadsMax, // maximal number of threads to launch
updateStatus, // final boolean updateStatus,
debugLevelInner); // final int debugLevel)
if (!ok) continue;
}
// save assigned disparity also? - with "-DSI_COMBO" suffix
if (quadCLT_main.correctionsParameters.clt_batch_dsi) {
quadCLT_main.saveDSI (
dsi);
}
}
}
}
} else { // if (quadCLT_main.correctionsParameters.clt_batch_explore) {
int num_restored = 0;
try {
num_restored = quadCLT_main.restoreDSI(
DSI_MAIN_SUFFIX, // "-DSI_COMBO", "-DSI_MAIN"
dsi,
false);
} catch (Exception e) {
} else { // if (quadCLT_main.correctionsParameters.clt_batch_explore) {
int num_restored = 0;
try {
num_restored = quadCLT_main.restoreDSI(
DSI_MAIN_SUFFIX, // "-DSI_COMBO", "-DSI_MAIN"
dsi,
false);
}
if (num_restored < 2) {
System.out.println("No DSI from the main camera is available. Please re-run with 'clt_batch_explore' enabled to generate it");
if (quadCLT_main.correctionsParameters.clt_batch_save_extrinsics) {
saveProperties(
set_name, // String set_name
null, // String path, // full name with extension or w/o path to use x3d directory
null, // Properties properties, // if null - will only save extrinsics)
debugLevel);
} catch (Exception e) {
quadCLT_main.saveInterProperties( // save properties for interscene processing (extrinsics, ers, ...)
null, // String path, // full name with extension or w/o path to use x3d directory
// null, // Properties properties, // if null - will only save extrinsics)
debugLevel);
}
if (num_restored < 2) {
System.out.println("No DSI from the main camera is available. Please re-run with 'clt_batch_explore' enabled to generate it");
if (quadCLT_main.correctionsParameters.clt_batch_save_extrinsics) {
saveProperties(
set_name, // String set_name
null, // String path, // full name with extension or w/o path to use x3d directory
null, // Properties properties, // if null - will only save extrinsics)
debugLevel);
quadCLT_main.saveInterProperties( // save properties for interscene processing (extrinsics, ers, ...)
null, // String path, // full name with extension or w/o path to use x3d directory
// null, // Properties properties, // if null - will only save extrinsics)
debugLevel);
}
if (quadCLT_main.correctionsParameters.clt_batch_save_all) {
saveProperties(
set_name, // String set_name
null, // String path, // full name with extension or w/o path to use x3d directory
properties, // Properties properties, // if null - will only save extrinsics)
debugLevel);
}
if (quadCLT_main.correctionsParameters.clt_batch_save_all) {
saveProperties(
set_name, // String set_name
null, // String path, // full name with extension or w/o path to use x3d directory
properties, // Properties properties, // if null - will only save extrinsics)
debugLevel);
}
/// continue; // skipping to the next file
/// continue; // skipping to the next file
}
}
}
// Process AUX (LWIR) camera data
// 1) Prepare DS for adjustments (just d/s, with ambiguous disparity tiles removed)
// 2) Prepare full D/S and FG/BG data to be embedded within the ML files
main_ds = new double[][] {dsi[DSI_DISPARITY_MAIN], dsi[DSI_STRENGTH_MAIN]}; // {null, null}
}
if ((adjust_aux == 0) &&
!quadCLT_main.correctionsParameters.clt_batch_4img_aux &&
!quadCLT_main.correctionsParameters.clt_batch_dsi_aux &&
!quadCLT_main.correctionsParameters.clt_batch_genMl &&
!quadCLT_main.correctionsParameters.clt_batch_save_extrinsics &&
!quadCLT_main.correctionsParameters.clt_batch_save_all) {
continue;
}
if ((main_ds != null) && (main_ds[0] != null)) {
quadCLT_aux.ds_from_main = quadCLT_aux.depthMapMainToAux( // only 2 layers for adjustments
main_ds, // double [][] ds,
quadCLT_main.getGeometryCorrection(), // GeometryCorrection geometryCorrection_main,
quadCLT_aux.getGeometryCorrection(), // GeometryCorrection geometryCorrection_aux,
clt_parameters,
false, // split_fg_bg,
true, // for_adjust,
debugLevel); // DEBUG_LEVEL); // int debug_level
this.dsi_aux_from_main = quadCLT_aux.depthMapMainToAux( // 8 layers for ML generation/exporting + 2 zero layers
main_ds, // double [][] ds,
quadCLT_main.getGeometryCorrection(), // GeometryCorrection geometryCorrection_main,
quadCLT_aux.getGeometryCorrection(), // GeometryCorrection geometryCorrection_aux,
clt_parameters,
true, // split_fg_bg,
false, // for_adjust,
debugLevel); // int debug_level
}
ImagePlus [] imp_srcs_aux = null;
if (nSet_aux >= 0) {
imp_srcs_aux = quadCLT_aux.conditionImageSet(
clt_parameters, // EyesisCorrectionParameters.CLTParameters clt_parameters,
colorProcParameters_aux, // ColorProcParameters colorProcParameters, //
sourceFiles, // String [] sourceFiles,
set_channels_aux[nSet_aux].name(), // String set_name,
referenceExposures_aux, // double [] referenceExposures,
channelFiles_aux, // int [] channelFiles,
scaleExposures_aux, //output // double [] scaleExposures
saturation_imp_aux, //output // boolean [][] saturation_imp,
threadsMax, // int threadsMax,
debugLevelInner); // int debugLevel);
// optionally adjust AUX extrinsics (using quadCLT_aux.ds_from_main )
for (int num_adjust_aux = 0; num_adjust_aux < adjust_aux; num_adjust_aux++) {
if (updateStatus) IJ.showStatus("Building basic DSI for the AUX camera image set "+quadCLT_main.image_name+
" using main camera DSI, pass "+(num_adjust_aux+1)+" of "+adjust_aux);
if (debugLevel > -5) {
System.out.println("Building basic DSI for the AUX camera image set "+quadCLT_main.image_name+
// Process AUX (LWIR) camera data
// 1) Prepare DS for adjustments (just d/s, with ambiguous disparity tiles removed)
// 2) Prepare full D/S and FG/BG data to be embedded within the ML files
main_ds = new double[][] {dsi[DSI_DISPARITY_MAIN], dsi[DSI_STRENGTH_MAIN]}; // {null, null}
}
if ((adjust_aux == 0) &&
!quadCLT_main.correctionsParameters.clt_batch_4img_aux &&
!quadCLT_main.correctionsParameters.clt_batch_dsi_aux &&
!quadCLT_main.correctionsParameters.clt_batch_genMl &&
!quadCLT_main.correctionsParameters.clt_batch_save_extrinsics &&
!quadCLT_main.correctionsParameters.clt_batch_save_all) {
continue;
}
if ((main_ds != null) && (main_ds[0] != null)) {
quadCLT_aux.ds_from_main = quadCLT_aux.depthMapMainToAux( // only 2 layers for adjustments
main_ds, // double [][] ds,
quadCLT_main.getGeometryCorrection(), // GeometryCorrection geometryCorrection_main,
quadCLT_aux.getGeometryCorrection(), // GeometryCorrection geometryCorrection_aux,
clt_parameters,
false, // split_fg_bg,
true, // for_adjust,
debugLevel); // DEBUG_LEVEL); // int debug_level
this.dsi_aux_from_main = quadCLT_aux.depthMapMainToAux( // 8 layers for ML generation/exporting + 2 zero layers
main_ds, // double [][] ds,
quadCLT_main.getGeometryCorrection(), // GeometryCorrection geometryCorrection_main,
quadCLT_aux.getGeometryCorrection(), // GeometryCorrection geometryCorrection_aux,
clt_parameters,
true, // split_fg_bg,
false, // for_adjust,
debugLevel); // int debug_level
}
ImagePlus [] imp_srcs_aux = null;
if (nSet_aux >= 0) {
imp_srcs_aux = quadCLT_aux.conditionImageSet(
clt_parameters, // EyesisCorrectionParameters.CLTParameters clt_parameters,
colorProcParameters_aux, // ColorProcParameters colorProcParameters, //
sourceFiles, // String [] sourceFiles,
set_channels_aux[nSet_aux].name(), // String set_name,
referenceExposures_aux, // double [] referenceExposures,
channelFiles_aux, // int [] channelFiles,
scaleExposures_aux, //output // double [] scaleExposures
saturation_imp_aux, //output // boolean [][] saturation_imp,
threadsMax, // int threadsMax,
debugLevelInner); // int debugLevel);
// optionally adjust AUX extrinsics (using quadCLT_aux.ds_from_main )
for (int num_adjust_aux = 0; num_adjust_aux < adjust_aux; num_adjust_aux++) {
if (updateStatus) IJ.showStatus("Building basic DSI for the AUX camera image set "+quadCLT_main.image_name+
" using main camera DSI, pass "+(num_adjust_aux+1)+" of "+adjust_aux);
if (debugLevel > -5) {
System.out.println("Building basic DSI for the AUX camera image set "+quadCLT_main.image_name+
" using main camera DSI, pass "+(num_adjust_aux+1)+" of "+adjust_aux);
}
String dbg_path = clt_parameters.lym_dbg_path; // /home/elphel/lwir16-proc/proc1/results_cuda/25/extrinsics_bgnd_combo.tif
if (dbg_path.length()==0) {
dbg_path = null;
}
// dbg_path = "/home/elphel/lwir16-proc/proc1/results_cuda/25/extrinsics_bgnd_combo.tif";
if (dbg_path == null) {
quadCLT_aux.preExpandCLTQuad3d( // returns ImagePlus, but it already should be saved/shown
imp_srcs_aux, // [srcChannel], // should have properties "name"(base for saving results), "channel","path"
saturation_imp_aux, // boolean [][] saturation_imp, // (near) saturated pixels or null
clt_parameters,
debayerParameters,
colorProcParameters_aux,
rgbParameters,
threadsMax, // maximal number of threads to launch
updateStatus,
debugLevelInner);
// adjust extrinsics here
System.out.println("Adjust AUX extrinsics here");
if (updateStatus) IJ.showStatus("Adjusting AUX camera image set for "+quadCLT_aux.image_name+
", pass "+(num_adjust_aux+1)+" of "+adjust_aux);
if (debugLevel > -5) {
System.out.println("Adjusting AUX camera image set for "+quadCLT_aux.image_name+
", pass "+(num_adjust_aux+1)+" of "+adjust_aux);
}
}
if (quadCLT_aux.ds_from_main == null) {
System.out.println("BUG: quadCLT_aux.ds_from_main should be not null here!");
double inf_min = -1.0;
double inf_max = 1.0;
if (num_adjust_aux >= (adjust_aux/2)) {
inf_min = -0.2;
inf_max = 0.2; // 0.05; Changed for LWIR16
}
// adjust w/o main camera - maybe will be used in the future
boolean ok = quadCLT_aux.extrinsicsCLT(
clt_parameters, // EyesisCorrectionParameters.CLTParameters clt_parameters,
dbg_path,
false, // adjust_poly,
inf_min, // double inf_min,
inf_max, // double inf_max,
threadsMax, //final int threadsMax, // maximal number of threads to launch
updateStatus,// final boolean updateStatus,
debugLevelInner); // 1); // final int debugLevel)
if (!ok) break;
} else {
boolean ok = quadCLT_aux.extrinsicsCLTfromGT(
null,
quadCLT_aux.ds_from_main, // gt_disp_strength,
clt_parameters, // EyesisCorrectionParameters.CLTParameters clt_parameters,
false, // adjust_poly,
threadsMax, // final int threadsMax, // maximal number of threads to launch
updateStatus, // final boolean updateStatus,
debugLevel + 2); // final int debugLevel)
if (!ok) break;
}
// clear memory for AUX
quadCLT_aux.tp.resetCLTPasses();
}
String dbg_path = clt_parameters.lym_dbg_path; // /home/elphel/lwir16-proc/proc1/results_cuda/25/extrinsics_bgnd_combo.tif
if (dbg_path.length()==0) {
dbg_path = null;
// Generate 4 AUX camera images and thumbnail
if (quadCLT_main.correctionsParameters.clt_batch_4img_aux){
if (clt_parameters.gpu_use_aux) {
if (updateStatus) IJ.showStatus("GPU: Rendering 4 AUX image set (disparity = 0) for "+quadCLT_aux.image_name+ "and a thumb nail");
quadCLT_aux.processCLTQuadCorrGPU(
imp_srcs_aux, // ImagePlus [] imp_quad,
saturation_imp_aux, // boolean [][] saturation_imp, // (near) saturated pixels or null
clt_parameters, // CLTParameters clt_parameters,
debayerParameters, // EyesisCorrectionParameters.DebayerParameters debayerParameters,
colorProcParameters_aux, // ColorProcParameters colorProcParameters,
channelGainParameters,
rgbParameters, // EyesisCorrectionParameters.RGBParameters rgbParameters,
scaleExposures_aux, // double [] scaleExposures, // probably not needed here - restores brightness of the final image
false, // boolean only4slice,
threadsMax, // final int threadsMax, // maximal number of threads to launch
updateStatus, // final boolean updateStatus,
debugLevel); // final int debugLevel);
} else {
if (updateStatus) IJ.showStatus("CPU: Rendering 4 AUX image set (disparity = 0) for "+quadCLT_aux.image_name);
quadCLT_aux.processCLTQuadCorrCPU( // returns ImagePlus, but it already should be saved/shown
// imp_srcs_aux, // [srcChannel], // should have properties "name"(base for saving results), "channel","path"
saturation_imp_aux, // boolean [][] saturation_imp, // (near) saturated pixels or null
clt_parameters,
debayerParameters,
colorProcParameters_aux,
channelGainParameters,
rgbParameters,
scaleExposures_aux,
false, // calculate and apply additional fine geometry correction
false, // calculate and apply geometry correction at infinity
threadsMax, // maximal number of threads to launch
updateStatus,
debugLevel);
quadCLT_aux.tp.resetCLTPasses();
}
}
// dbg_path = "/home/elphel/lwir16-proc/proc1/results_cuda/25/extrinsics_bgnd_combo.tif";
if (dbg_path == null) {
// Currently - no LWIR 3D model generation, maybe it will be added later
// Generate AUX DS
if (quadCLT_main.correctionsParameters.clt_batch_dsi_aux) {
if (updateStatus) IJ.showStatus("Building basic DSI for the aux camera image set "+quadCLT_main.image_name+" (for DSI export)");
quadCLT_aux.preExpandCLTQuad3d( // returns ImagePlus, but it already should be saved/shown
imp_srcs_aux, // [srcChannel], // should have properties "name"(base for saving results), "channel","path"
saturation_imp_aux, // boolean [][] saturation_imp, // (near) saturated pixels or null
......@@ -11598,198 +11695,206 @@ if (debugLevel > -100) return true; // temporarily !
threadsMax, // maximal number of threads to launch
updateStatus,
debugLevelInner);
// adjust extrinsics here
System.out.println("Adjust AUX extrinsics here");
if (updateStatus) IJ.showStatus("Adjusting AUX camera image set for "+quadCLT_aux.image_name+
", pass "+(num_adjust_aux+1)+" of "+adjust_aux);
if (debugLevel > -5) {
System.out.println("Adjusting AUX camera image set for "+quadCLT_aux.image_name+
", pass "+(num_adjust_aux+1)+" of "+adjust_aux);
if (quadCLT_main.correctionsParameters.clt_batch_dsi_aux_full) {
if (updateStatus) IJ.showStatus("Expanding DSI for the aux camera image set "+quadCLT_main.image_name+" (for DSI export)");
quadCLT_aux.expandCLTQuad3d( // returns ImagePlus, but it already should be saved/shown
clt_parameters,
debayerParameters,
colorProcParameters_aux,
channelGainParameters,
rgbParameters,
threadsMax, // maximal number of threads to launch
updateStatus,
debugLevel);
}
}
if (quadCLT_aux.ds_from_main == null) {
System.out.println("BUG: quadCLT_aux.ds_from_main should be not null here!");
double inf_min = -1.0;
double inf_max = 1.0;
if (num_adjust_aux >= (adjust_aux/2)) {
inf_min = -0.2;
inf_max = 0.2; // 0.05; Changed for LWIR16
// double [][] aux_last_scan = quadCLT_aux.tp.getShowDS(
// quadCLT_aux.tp.clt_3d_passes.get( quadCLT_aux.tp.clt_3d_passes.size() -1),
// false); // boolean force_final);
double [][] aux_last_scan = quadCLT_aux.tp.getDSLMA(
quadCLT_aux.tp.clt_3d_passes.get( quadCLT_aux.tp.clt_3d_passes.size() -1),
false); // boolean force_final);
dsi[DSI_DISPARITY_AUX] = aux_last_scan[0];
dsi[DSI_STRENGTH_AUX] = aux_last_scan[1];
dsi[DSI_DISPARITY_AUX_LMA] = aux_last_scan[2];
// quadCLT_main.saveDSIMain (dsi);
quadCLT_aux.saveDSIAll (
"-DSI_MAIN", // String suffix, // "-DSI_MAIN"
dsi);
if (clt_parameters.rig.ml_copyJP4) {
copyJP4src(
set_name, // String set_name
quadCLT_main, // QuadCLT quadCLT_main, // tiles should be set
quadCLT_aux, // QuadCLT quadCLT_aux,
clt_parameters, // EyesisCorrectionParameters.CLTParameters clt_parameters,
debugLevel); // final int debugLevel)
}
if (dsi_aux_from_main != null) {
dsi_aux_from_main[QuadCLT.FGBG_AUX_DISP] = aux_last_scan[0];
dsi_aux_from_main[QuadCLT.FGBG_AUX_STR] = aux_last_scan[1];
quadCLT_aux.saveDSIGTAux( // GT from main and AUX DS
quadCLT_aux,
dsi_aux_from_main);
}
// adjust w/o main camera - maybe will be used in the future
boolean ok = quadCLT_aux.extrinsicsCLT(
clt_parameters, // EyesisCorrectionParameters.CLTParameters clt_parameters,
dbg_path,
false, // adjust_poly,
inf_min, // double inf_min,
inf_max, // double inf_max,
threadsMax, //final int threadsMax, // maximal number of threads to launch
updateStatus,// final boolean updateStatus,
debugLevelInner); // 1); // final int debugLevel)
if (!ok) break;
} else {
boolean ok = quadCLT_aux.extrinsicsCLTfromGT(
null,
quadCLT_aux.ds_from_main, // gt_disp_strength,
clt_parameters, // EyesisCorrectionParameters.CLTParameters clt_parameters,
false, // adjust_poly,
threadsMax, // final int threadsMax, // maximal number of threads to launch
updateStatus, // final boolean updateStatus,
debugLevel + 2); // final int debugLevel)
if (!ok) break;
}
// clear memory for AUX
quadCLT_aux.tp.resetCLTPasses();
}
// Generate 4 AUX camera images and thumbnail
if (quadCLT_main.correctionsParameters.clt_batch_4img_aux){
if (clt_parameters.gpu_use_aux) {
if (updateStatus) IJ.showStatus("GPU: Rendering 4 AUX image set (disparity = 0) for "+quadCLT_aux.image_name+ "and a thumb nail");
quadCLT_aux.processCLTQuadCorrGPU(
imp_srcs_aux, // ImagePlus [] imp_quad,
saturation_imp_aux, // boolean [][] saturation_imp, // (near) saturated pixels or null
clt_parameters, // CLTParameters clt_parameters,
debayerParameters, // EyesisCorrectionParameters.DebayerParameters debayerParameters,
colorProcParameters_aux, // ColorProcParameters colorProcParameters,
channelGainParameters,
rgbParameters, // EyesisCorrectionParameters.RGBParameters rgbParameters,
scaleExposures_aux, // double [] scaleExposures, // probably not needed here - restores brightness of the final image
false, // boolean only4slice,
threadsMax, // final int threadsMax, // maximal number of threads to launch
updateStatus, // final boolean updateStatus,
debugLevel); // final int debugLevel);
} else {
if (updateStatus) IJ.showStatus("CPU: Rendering 4 AUX image set (disparity = 0) for "+quadCLT_aux.image_name);
quadCLT_aux.processCLTQuadCorrCPU( // returns ImagePlus, but it already should be saved/shown
// imp_srcs_aux, // [srcChannel], // should have properties "name"(base for saving results), "channel","path"
saturation_imp_aux, // boolean [][] saturation_imp, // (near) saturated pixels or null
clt_parameters,
debayerParameters,
colorProcParameters_aux,
channelGainParameters,
rgbParameters,
scaleExposures_aux,
false, // calculate and apply additional fine geometry correction
false, // calculate and apply geometry correction at infinity
threadsMax, // maximal number of threads to launch
updateStatus,
debugLevel);
quadCLT_aux.tp.resetCLTPasses();
}
//
}
// Currently - no LWIR 3D model generation, maybe it will be added later
// Generate AUX DS
if (quadCLT_main.correctionsParameters.clt_batch_dsi_aux) {
if (updateStatus) IJ.showStatus("Building basic DSI for the aux camera image set "+quadCLT_main.image_name+" (for DSI export)");
quadCLT_aux.preExpandCLTQuad3d( // returns ImagePlus, but it already should be saved/shown
imp_srcs_aux, // [srcChannel], // should have properties "name"(base for saving results), "channel","path"
saturation_imp_aux, // boolean [][] saturation_imp, // (near) saturated pixels or null
clt_parameters,
debayerParameters,
colorProcParameters_aux,
rgbParameters,
threadsMax, // maximal number of threads to launch
updateStatus,
debugLevelInner);
if (quadCLT_main.correctionsParameters.clt_batch_dsi_aux_full) {
if (updateStatus) IJ.showStatus("Expanding DSI for the aux camera image set "+quadCLT_main.image_name+" (for DSI export)");
quadCLT_aux.expandCLTQuad3d( // returns ImagePlus, but it already should be saved/shown
clt_parameters,
debayerParameters,
colorProcParameters_aux,
channelGainParameters,
rgbParameters,
threadsMax, // maximal number of threads to launch
updateStatus,
// TODO: Add new ML generation here
if (quadCLT_main.correctionsParameters.clt_batch_genMl) { // rig.ml_generate) { //clt_batch_genMl
outputMLDataLwir(
quadCLT_aux, // QuadCLT quadCLT_aux,
clt_parameters, // EyesisCorrectionParameters.CLTParameters clt_parameters,
null, //String ml_directory, // full path or null (will use config one)
threadsMax, // final int threadsMax, // maximal number of threads to launch
updateStatus, // final boolean updateStatus,
debugLevel); // final int debugLevel)
}
if (quadCLT_main.correctionsParameters.clt_batch_save_extrinsics) {
saveProperties( // uses global quadCLT_main
set_name, // String set_name
null, // String path, // full name with extension or w/o path to use x3d directory
null, // Properties properties, // if null - will only save extrinsics)
debugLevel);
if (set_channels_main != null) {
quadCLT_main.saveInterProperties( // save properties for interscene processing (extrinsics, ers, ...)
null, // String path, // full name with extension or w/o path to use x3d directory
debugLevel);
}
// double [][] aux_last_scan = quadCLT_aux.tp.getShowDS(
// quadCLT_aux.tp.clt_3d_passes.get( quadCLT_aux.tp.clt_3d_passes.size() -1),
// false); // boolean force_final);
double [][] aux_last_scan = quadCLT_aux.tp.getDSLMA(
quadCLT_aux.tp.clt_3d_passes.get( quadCLT_aux.tp.clt_3d_passes.size() -1),
false); // boolean force_final);
dsi[DSI_DISPARITY_AUX] = aux_last_scan[0];
dsi[DSI_STRENGTH_AUX] = aux_last_scan[1];
dsi[DSI_DISPARITY_AUX_LMA] = aux_last_scan[2];
// quadCLT_main.saveDSIMain (dsi);
quadCLT_aux.saveDSIAll (
"-DSI_MAIN", // String suffix, // "-DSI_MAIN"
dsi);
if (clt_parameters.rig.ml_copyJP4) {
copyJP4src(
set_name, // String set_name
quadCLT_main, // QuadCLT quadCLT_main, // tiles should be set
quadCLT_aux, // QuadCLT quadCLT_aux,
clt_parameters, // EyesisCorrectionParameters.CLTParameters clt_parameters,
debugLevel); // final int debugLevel)
if (set_channels_aux != null) {
quadCLT_aux.saveInterProperties( // save properties for interscene processing (extrinsics, ers, ...)
null, // String path, // full name with extension or w/o path to use x3d directory
debugLevel);
}
if (dsi_aux_from_main != null) {
dsi_aux_from_main[QuadCLT.FGBG_AUX_DISP] = aux_last_scan[0];
dsi_aux_from_main[QuadCLT.FGBG_AUX_STR] = aux_last_scan[1];
quadCLT_aux.saveDSIGTAux( // GT from main and AUX DS
quadCLT_aux,
dsi_aux_from_main);
}
quadCLT_aux.tp.resetCLTPasses();
}
//
}
// TODO: Add new ML generation here
if (quadCLT_main.correctionsParameters.clt_batch_genMl) { // rig.ml_generate) { //clt_batch_genMl
outputMLDataLwir(
quadCLT_aux, // QuadCLT quadCLT_aux,
clt_parameters, // EyesisCorrectionParameters.CLTParameters clt_parameters,
null, //String ml_directory, // full path or null (will use config one)
threadsMax, // final int threadsMax, // maximal number of threads to launch
updateStatus, // final boolean updateStatus,
debugLevel); // final int debugLevel)
}
if (quadCLT_main.correctionsParameters.clt_batch_save_extrinsics) {
saveProperties( // uses global quadCLT_main
set_name, // String set_name
null, // String path, // full name with extension or w/o path to use x3d directory
null, // Properties properties, // if null - will only save extrinsics)
debugLevel);
if (set_channels_main != null) {
quadCLT_main.saveInterProperties( // save properties for interscene processing (extrinsics, ers, ...)
null, // String path, // full name with extension or w/o path to use x3d directory
debugLevel);
}
if (set_channels_aux != null) {
quadCLT_aux.saveInterProperties( // save properties for interscene processing (extrinsics, ers, ...)
null, // String path, // full name with extension or w/o path to use x3d directory
if (quadCLT_main.correctionsParameters.clt_batch_save_all) {
saveProperties(
set_name, // String set_name
null, // String path, // full name with extension or w/o path to use x3d directory
properties, // Properties properties, // if null - will only save extrinsics)
debugLevel);
}
}
if (quadCLT_main.correctionsParameters.clt_batch_save_all) {
saveProperties(
set_name, // String set_name
null, // String path, // full name with extension or w/o path to use x3d directory
properties, // Properties properties, // if null - will only save extrinsics)
debugLevel);
}
Runtime.getRuntime().gc();
if (debugLevel >-1) System.out.println("Processing set "+(nSet+1)+" (of "+set_channels_aux.length+") finished at "+
IJ.d2s(0.000000001*(System.nanoTime()-this.startTime),3)+" sec, --- Free memory="+Runtime.getRuntime().freeMemory()+" (of "+Runtime.getRuntime().totalMemory()+")");
if (quadCLT_aux.eyesisCorrections.stopRequested.get()>0) {
System.out.println("User requested stop");
System.out.println("Processing "+(nSet + 1)+" file sets (of "+set_channels_main.length+") finished at "+
Runtime.getRuntime().gc();
if (debugLevel >-1) System.out.println("Processing set "+(nSet+1)+" (of "+set_channels_aux.length+") finished at "+
IJ.d2s(0.000000001*(System.nanoTime()-this.startTime),3)+" sec, --- Free memory="+Runtime.getRuntime().freeMemory()+" (of "+Runtime.getRuntime().totalMemory()+")");
return;
if (quadCLT_aux.eyesisCorrections.stopRequested.get()>0) {
System.out.println("User requested stop");
System.out.println("Processing "+(nSet + 1)+" file sets (of "+set_channels_main.length+") finished at "+
IJ.d2s(0.000000001*(System.nanoTime()-this.startTime),3)+" sec, --- Free memory="+Runtime.getRuntime().freeMemory()+" (of "+Runtime.getRuntime().totalMemory()+")");
return;
}
}
}
// System.out.println("batchLwirRig(): processing "+(quadCLT_main.getTotalFiles(set_channels_main)+quadCLT_aux.getTotalFiles(set_channels_aux))+" files ("+set_channels_main.length+" file sets) finished at "+
int num_main = (quadCLT_main==null)? 0 : quadCLT_main.getTotalFiles(set_channels_main);
int num_aux = (quadCLT_aux ==null)? 0 : quadCLT_aux.getTotalFiles(set_channels_aux);
// Process LWIR16 tasks applicable to scene series rather than individual scenes
if (quadCLT_main.correctionsParameters.clt_batch_pose_pairs_main) {
TestInterLMA(quadCLT_main, // QUAD_CLT, // QuadCLT quadCLT_main,
clt_parameters, // EyesisCorrectionParameters.DCTParameters dct_parameters,
debayerParameters, // EyesisCorrectionParameters.DebayerParameters debayerParameters,
colorProcParameters, // COLOR_PROC_PARAMETERS, //EyesisCorrectionParameters.ColorProcParameters
// colorProcParameters,
channelGainParameters, // CorrectionColorProc.ColorGainsParameters channelGainParameters,
rgbParameters, // EyesisCorrectionParameters.RGBParameters rgbParameters,
equirectangularParameters, // EyesisCorrectionParameters.EquirectangularParameters
// equirectangularParameters,
properties, // Properties properties,
true, // false, // boolean reset_from_extrinsics,
threadsMax, // final int threadsMax, // maximal number of threads to launch
updateStatus, // final boolean updateStatus,
debugLevel);
}
if (quadCLT_main.correctionsParameters.clt_batch_pose_last_main) {
interSeriesLMA(quadCLT_main, // QUAD_CLT, // QuadCLT quadCLT_main,
clt_parameters, // EyesisCorrectionParameters.DCTParameters dct_parameters,
debayerParameters, // EyesisCorrectionParameters.DebayerParameters debayerParameters,
colorProcParameters, // COLOR_PROC_PARAMETERS, //EyesisCorrectionParameters.ColorProcParameters
// colorProcParameters,
channelGainParameters, // CorrectionColorProc.ColorGainsParameters channelGainParameters,
rgbParameters, // EyesisCorrectionParameters.RGBParameters rgbParameters,
equirectangularParameters, // EyesisCorrectionParameters.EquirectangularParameters
// equirectangularParameters,
properties, // Properties properties,
true, // false, // boolean reset_from_extrinsics,
threadsMax, // final int threadsMax, // maximal number of threads to launch
updateStatus, // final boolean updateStatus,
debugLevel);
}
if (quadCLT_main.correctionsParameters.clt_batch_ml_last_main) {
interIntraExportML(quadCLT_main, // QuadCLT quadCLT_main,
clt_parameters, // EyesisCorrectionParameters.DCTParameters dct_parameters,
debayerParameters, // EyesisCorrectionParameters.DebayerParameters debayerParameters,
colorProcParameters, // EyesisCorrectionParameters.ColorProcParameters colorProcParameters,
channelGainParameters, // CorrectionColorProc.ColorGainsParameters channelGainParameters,
rgbParameters, // EyesisCorrectionParameters.RGBParameters rgbParameters,
equirectangularParameters, // EyesisCorrectionParameters.EquirectangularParameters
// equirectangularParameters,
properties, // Properties properties,
threadsMax, // final int threadsMax, // maximal number of threads to launch
updateStatus, // final boolean updateStatus,
debugLevel);
}
if (quadCLT_main.correctionsParameters.clt_batch_pose_pairs_aux) {
TestInterLMA(quadCLT_aux, // QUAD_CLT, // QuadCLT quadCLT_main,
clt_parameters, // EyesisCorrectionParameters.DCTParameters dct_parameters,
debayerParameters, // EyesisCorrectionParameters.DebayerParameters debayerParameters,
colorProcParameters_aux, // COLOR_PROC_PARAMETERS, //EyesisCorrectionParameters.ColorProcParameters
// colorProcParameters,
channelGainParameters, // CorrectionColorProc.ColorGainsParameters channelGainParameters,
rgbParameters, // EyesisCorrectionParameters.RGBParameters rgbParameters,
equirectangularParameters, // EyesisCorrectionParameters.EquirectangularParameters
// equirectangularParameters,
properties, // Properties properties,
true, // false, // boolean reset_from_extrinsics,
threadsMax, // final int threadsMax, // maximal number of threads to launch
updateStatus, // final boolean updateStatus,
debugLevel);
}
if (quadCLT_main.correctionsParameters.clt_batch_pose_last_aux) {
interSeriesLMA(quadCLT_aux, // QUAD_CLT, // QuadCLT quadCLT_main,
clt_parameters, // EyesisCorrectionParameters.DCTParameters dct_parameters,
debayerParameters, // EyesisCorrectionParameters.DebayerParameters debayerParameters,
colorProcParameters_aux, // COLOR_PROC_PARAMETERS, //EyesisCorrectionParameters.ColorProcParameters
// colorProcParameters,
channelGainParameters, // CorrectionColorProc.ColorGainsParameters channelGainParameters,
rgbParameters, // EyesisCorrectionParameters.RGBParameters rgbParameters,
equirectangularParameters, // EyesisCorrectionParameters.EquirectangularParameters
// equirectangularParameters,
properties, // Properties properties,
true, // false, // boolean reset_from_extrinsics,
threadsMax, // final int threadsMax, // maximal number of threads to launch
updateStatus, // final boolean updateStatus,
debugLevel);
}
if (quadCLT_main.correctionsParameters.clt_batch_ml_last_aux) {
interIntraExportML(quadCLT_aux, // QuadCLT quadCLT_main,
clt_parameters, // EyesisCorrectionParameters.DCTParameters dct_parameters,
debayerParameters, // EyesisCorrectionParameters.DebayerParameters debayerParameters,
colorProcParameters_aux, // EyesisCorrectionParameters.ColorProcParameters colorProcParameters,
channelGainParameters, // CorrectionColorProc.ColorGainsParameters channelGainParameters,
rgbParameters, // EyesisCorrectionParameters.RGBParameters rgbParameters,
equirectangularParameters, // EyesisCorrectionParameters.EquirectangularParameters
// equirectangularParameters,
properties, // Properties properties,
threadsMax, // final int threadsMax, // maximal number of threads to launch
updateStatus, // final boolean updateStatus,
debugLevel);
}
System.out.println("batchLwirRig(): processing "+(num_main + num_aux)+" files ("+set_channels.length+" file sets) finished at "+
IJ.d2s(0.000000001*(System.nanoTime()-this.startTime),3)+" sec, --- Free memory="+Runtime.getRuntime().freeMemory()+" (of "+Runtime.getRuntime().totalMemory()+")");
}
......
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