fixed some bugs, retesting

src/main/java/com/elphel/imagej/cuas/CuasMotion.java

@@ -6694,6 +6694,7 @@ public class CuasMotion {
 		final double [][][] target_sequence = new double[num_seq][num_tiles][];
 		final Thread[] threads = ImageDtt.newThreadArray();
 		final AtomicInteger ai = new AtomicInteger(0);
+		System.out.println("convertFromMultiTarget(): minimal_score="+minimal_score+", min_seq="+min_seq+", enough_seq="+enough_seq);
 
 		for (int ithread = 0; ithread < threads.length; ithread++) {
 			threads[ithread] = new Thread() {
@@ -6706,7 +6707,7 @@ public class CuasMotion {
 							double [][] targets = target_multi[nSeq][ntile];
 							if ((targets != null) && (targets.length > 0)) {
 								if (targets[0][CuasMotionLMA.RSLT_FAIL] == CuasMotionLMA.FAIL_NONE) {
-									if (targets[0][CuasMotionLMA.RSLT_MATCH_LENGTH] ==enough_seq) {
+									if (targets[0][CuasMotionLMA.RSLT_MATCH_LENGTH] >=(enough_seq-1)) {
 										target_sequence[nSeq][ntile] = targets[0];
 										remain[nSeq]++;
 									} else if ((targets[0][CuasMotionLMA.RSLT_QSCORE] >= minimal_score) && (targets[0][CuasMotionLMA.RSLT_MATCH_LENGTH] >= (min_seq-1))) {
@@ -9176,7 +9177,7 @@ public class CuasMotion {
 		// 		interseq_scale = (half_step ? 0.25 : 0.5) // ???
 		
 		if (debugLevel > -4) System.out.println("\nStarting resolution of conflicting tiles.");
-		boolean         good_only=    true;
+		boolean         good_only=    false; // true;
 		boolean         show_empty =  true; // false; // show scenes with no (valid) targets
 		boolean         trim_nulls =  true;
 		final double    duplicate_tolerance = clt_parameters.imp.cuas_duplicate_tolerance ; // 2.0; // (pix) Remove weaker maximums closer than this to a stronger one   		
@@ -9327,15 +9328,29 @@ public class CuasMotion {
 		
 		// apply filter5 to targets_good
 		findStrongerNeighbor(// does not modify "when"
-				targets_multi,      // final double [][][][] target_multi,
+				targets_multi,        // final double [][][][] target_multi,
 				filter5,              // final boolean [][] filter5)
-				true, // false,                // final boolean       mark_failed,
-				cuasMotion.tilesX);   // final int           tilesX) {				
+				true,                 // false,                // final boolean       mark_failed,
+				cuasMotion.tilesX);   // final int           tilesX) {	
+		if (intermed_low  && debug_more) {
+			ImagePlus imp_neibs = showTargetSequence(
+					targets_multi,         // double [][][] vector_fields_sequence,
+					slice_titles,         // String []     titles, // all slices*frames titles or just slice titles or null
+					model_prefix+"-STRONGER-NEIBS",// String        title,
+					good_only,            // final boolean         good_only,
+					show_empty,           // final boolean         show_empty, // show scenes with no (valid) targets
+					!batch_mode,          // boolean       show,
+					cuasMotion.tilesX);   //  int           tilesX) {
+			parentCLT.saveImagePlusInModelDirectory(imp_neibs);  // ImagePlus   imp)
+		}
+		
+		
+		
 		// now failed by neighbors are marked as non-NaN (tile index or -1), not as failed
 		// here failed by stronger neighbors are also removed (balance weights if needed)
 		// maybe also needed to remove all under threshold here
 
-		sortMultiTargets(
+		sortMultiTargets( // stronger neibs will be incorrect
 				targets_multi, // final double [][][][] target_multi,
 				true); // trim_nulls);   // final boolean         trim_nulls) { // trim null targets
 		// final with all multi-target data