debugging and fine tuning detection

src/main/java/com/elphel/imagej/common/ShowDoubleFloatArrays.java

@@ -1091,6 +1091,7 @@ G= Y  +Pr*(- 2*Kr*(1-Kr))/Kg + Pb*(-2*Kb*(1-Kb))/Kg
 			int         num_slices, // (0 - all)
 			int []      wh) {
 		ImagePlus imp = null;
+		System.out.println("readFloatArray(): reading "+file_path);
 		try {
 			imp = new ImagePlus(file_path);
 		} catch (Exception e) {
@@ -1111,6 +1112,7 @@ G= Y  +Pr*(- 2*Kr*(1-Kr))/Kg + Pb*(-2*Kb*(1-Kb))/Kg
 			int []      wh,            // should be null or int[2] 
 			String [][] ptop_titles,   // should be null or String [1][]
 			String [][] pslice_titles){// should be null or String [1][]
+		System.out.println("readDoubleHyperstack(): reading "+path);
 		ImagePlus imp = new ImagePlus(path);
 		if (imp.getWidth() == 0) {
 			System.out.println("testSynthetic(): Failed reading Vector field from: " + path);

src/main/java/com/elphel/imagej/cuas/CuasMotionLMA.java

@@ -124,6 +124,7 @@ public class CuasMotionLMA {
 	public static final int FAIL_MISMATCH = 17;  // Mismatch on both ends is too high 
 	public static final int FAIL_NEIGHBOR = 18;  // failed because some neighbor is stronger   
 	public static final int FAIL_DUPLICATE= 19;  // coordinate are (almost) the same as those of a stronger tile   
+	public static final int FAIL_USED=      20;  // non-centered used to generate centered, remove this   
 	
 	public static final int CENTERED_NO =    0; 
 	public static final int CENTERED_YES =   1; 

src/main/java/com/elphel/imagej/tileprocessor/QuadCLTCPU.java

@@ -6171,6 +6171,7 @@ public class QuadCLTCPU {
 		String x3d_path = readX3dDirectory(correctionsParameters.getModelName(image_name));
 		String file_name = image_name + suffix;
 		String file_path = x3d_path + Prefs.getFileSeparator() + file_name + ".tiff";
+		System.out.println("readImagePlusFromModelDirectory(): reading "+file_path);
 		ImagePlus imp = null;
 		try {
 			imp = new ImagePlus(file_path);
@@ -6184,41 +6185,6 @@ public class QuadCLTCPU {
 	}
 	
 	
-	/*
-	public float [][] readFloatArrayFromThisModelDirectory(
-			String      suffix,
-			int         num_slices, // (0 - all)
-			int []      wh)
-	{
-		String x3d_path = getImagePath(); // getX3dDirectory();
-		String file_name = image_name + suffix;
-		String file_path = x3d_path + Prefs.getFileSeparator() + file_name + ".tiff";
-		ImagePlus imp = null;
-		try {
-			imp = new ImagePlus(file_path);
-		} catch (Exception e) {
-			System.out.println ("Failed to open "+file_path+", will generate it");
-		}
-		if ((imp == null) || (imp.getTitle() == null) || (imp.getTitle().equals(""))) {
-			return null;
-		}
-		ImageStack imageStack = imp.getStack();
-		int nChn=imageStack.getSize();
-		if ((num_slices > 0) && (num_slices < nChn)) {
-			nChn = num_slices;
-		}
-		float [][] result = new float [nChn][]; 
-		for (int n = 0; n < nChn; n++) {
-			result[n] = (float[]) imageStack.getPixels(n + 1);
-		}
-		if (wh != null) {
-			wh[0] = imp.getWidth();
-			wh[1] = imp.getHeight();
-		}
-		return result;
-	}*/
-	
-	
 
 	public void saveDSI() { saveDSI(this.dsi);}