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imagej-elphel
Commit 155415d8 authored by Andrey Filippov's avatar Andrey Filippov
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Generating more data for plots in Libreoffice Calc

parent e6d6f963
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Showing with 979 additions and 219 deletions
src/main/java/com/elphel/imagej/tileprocessor/QuadCLT.java
View file @ 155415d8
......@@ -2010,11 +2010,7 @@ public class QuadCLT extends QuadCLTCPU {
EyesisCorrectionParameters.RGBParameters rgbParameters,
final int threadsMax, // maximal number of threads to launch
final int debugLevel){
String x3d_path= correctionsParameters.selectX3dDirectory( // for x3d and obj
correctionsParameters.getModelName(image_name), // quad timestamp. Will be ignored if correctionsParameters.use_x3d_subdirs is false
correctionsParameters.x3dModelVersion,
true, // smart,
true); //newAllowed, // save
String x3d_path = getX3dDirectory();
String file_name = image_name + suffix;
String file_path = x3d_path + Prefs.getFileSeparator() + file_name + ".tiff";
if ((getGPU() != null) && (getGPU().getQuadCLT() != this)) {
......@@ -2224,11 +2220,7 @@ public class QuadCLT extends QuadCLTCPU {
if (clt_parameters.gen_4_img) { // save 4 JPEG images
// Save as individual JPEG images in the model directory
String x3d_path= correctionsParameters.selectX3dDirectory(
image_name, // quad timestamp. Will be ignored if correctionsParameters.use_x3d_subdirs is false
correctionsParameters.x3dModelVersion,
true, // smart,
true); //newAllowed, // save
String x3d_path = getX3dDirectory();
for (int sub_img = 0; sub_img < imps_RGB.length; sub_img++){
EyesisCorrections.saveAndShow(
imps_RGB[sub_img],
......@@ -2759,11 +2751,7 @@ public class QuadCLT extends QuadCLTCPU {
if (clt_parameters.gen_4_img) { // save 4 JPEG images
// Save as individual JPEG images in the model directory
String x3d_path= quadCLT_main.correctionsParameters.selectX3dDirectory(
name, // quad timestamp. Will be ignored if correctionsParameters.use_x3d_subdirs is false
quadCLT_main.correctionsParameters.x3dModelVersion,
true, // smart,
true); //newAllowed, // save
String x3d_path= quadCLT_main.getX3dDirectory();
for (int sub_img = 0; sub_img < imps_RGB.length; sub_img++){
EyesisCorrections.saveAndShow(
imps_RGB[sub_img],
......
src/main/java/com/elphel/imagej/tileprocessor/QuadCLTCPU.java
View file @ 155415d8
......@@ -329,6 +329,26 @@ public class QuadCLTCPU {
return image_name;
}
public String getX3dDirectory() { // replace direct calculations
String x3d_path = correctionsParameters.selectX3dDirectory( // for x3d and obj
correctionsParameters.getModelName(image_name), // quad timestamp. Will be ignored if correctionsParameters.use_x3d_subdirs is false
correctionsParameters.x3dModelVersion,
true, // smart,
true); //newAllowed, // save
return x3d_path;
}
// maybe will not be needed? TODO: Check
public String getX3dDirectory(String name) { // replace direct calculations
String x3d_path = correctionsParameters.selectX3dDirectory( // for x3d and obj
name, // quad timestamp. Will be ignored if correctionsParameters.use_x3d_subdirs is false
correctionsParameters.x3dModelVersion,
true, // smart,
true); //newAllowed, // save
return x3d_path;
}
public int restoreDSI(
String suffix,
boolean silent) // "-DSI_COMBO", "-DSI_MAIN" (DSI_COMBO_SUFFIX, DSI_MAIN_SUFFIX)
......@@ -344,11 +364,7 @@ public class QuadCLTCPU {
String suffix, // "-DSI_COMBO", "-DSI_MAIN" (DSI_COMBO_SUFFIX, DSI_MAIN_SUFFIX)
double [][] dsi,
boolean silent) {
String x3d_path= correctionsParameters.selectX3dDirectory( // for x3d and obj
correctionsParameters.getModelName(image_name), // quad timestamp. Will be ignored if correctionsParameters.use_x3d_subdirs is false
correctionsParameters.x3dModelVersion,
true, // smart,
true); //newAllowed, // save
String x3d_path = getX3dDirectory();
String file_path = x3d_path + Prefs.getFileSeparator() + image_name + suffix + ".tiff";
ImagePlus imp = null;
try {
......@@ -404,12 +420,8 @@ public class QuadCLTCPU {
}
if (!path.contains(Prefs.getFileSeparator())) {
String x3d_path= correctionsParameters.selectX3dDirectory( // for x3d and obj
correctionsParameters.getModelName(image_name), // quad timestamp. Will be ignored if correctionsParameters.use_x3d_subdirs is false
correctionsParameters.x3dModelVersion,
true, // smart,
true); //newAllowed, // save
path = x3d_path+Prefs.getFileSeparator()+path;
String x3d_path = getX3dDirectory();
path = x3d_path+Prefs.getFileSeparator()+path;
}
Properties inter_properties = new Properties();
String prefix = is_aux?PREFIX_AUX:PREFIX;
......@@ -465,12 +477,8 @@ public class QuadCLTCPU {
}
if (!path.contains(Prefs.getFileSeparator())) {
String x3d_path= correctionsParameters.selectX3dDirectory( // for x3d and obj
correctionsParameters.getModelName(image_name), // quad timestamp. Will be ignored if correctionsParameters.use_x3d_subdirs is false
correctionsParameters.x3dModelVersion,
true, // smart,
true); //newAllowed, // save
path = x3d_path+Prefs.getFileSeparator()+path;
String x3d_path = getX3dDirectory();
path = x3d_path+Prefs.getFileSeparator()+path;
}
properties = loadProperties(
path, // String path,
......@@ -827,11 +835,7 @@ public class QuadCLTCPU {
final int num_cams = this.image_data.length;
final int num_cols = image_data[0].length;
final int [] image_wh = geometryCorrection.getSensorWH();
String x3d_path= correctionsParameters.selectX3dDirectory( // for x3d and obj
correctionsParameters.getModelName(image_name), // quad timestamp. Will be ignored if correctionsParameters.use_x3d_subdirs is false
correctionsParameters.x3dModelVersion,
true, // smart,
true); //newAllowed, // save
String x3d_path = getX3dDirectory();
String noise_suffix = suffix + sigma;
String file_name = image_name + noise_suffix;
String file_path = x3d_path + Prefs.getFileSeparator() + file_name + ".tiff";
......@@ -962,11 +966,7 @@ public class QuadCLTCPU {
int width,
int height)
{
String x3d_path= correctionsParameters.selectX3dDirectory( // for x3d and obj
correctionsParameters.getModelName(image_name), // quad timestamp. Will be ignored if correctionsParameters.use_x3d_subdirs is false
correctionsParameters.x3dModelVersion,
true, // smart,
true); //newAllowed, // save
String x3d_path = getX3dDirectory();
String file_name = image_name + suffix;
String file_path = x3d_path + Prefs.getFileSeparator() + file_name + ".tiff";
ImageStack imageStack = (new ShowDoubleFloatArrays()).makeStack(data, width, height, labels);
......@@ -984,11 +984,7 @@ public class QuadCLTCPU {
)
{
// final int [] image_wh = geometryCorrection.getSensorWH();
String x3d_path= correctionsParameters.selectX3dDirectory( // for x3d and obj
correctionsParameters.getModelName(image_name), // quad timestamp. Will be ignored if correctionsParameters.use_x3d_subdirs is false
correctionsParameters.x3dModelVersion,
true, // smart,
true); //newAllowed, // save
String x3d_path = getX3dDirectory();
String file_name = image_name + suffix;
String file_path = x3d_path + Prefs.getFileSeparator() + file_name + ".tiff";
ImagePlus imp = null;
......@@ -1030,19 +1026,15 @@ public class QuadCLTCPU {
double [][] dsi
)
{
String x3d_path= correctionsParameters.selectX3dDirectory( // for x3d and obj
correctionsParameters.getModelName(image_name), // quad timestamp. Will be ignored if correctionsParameters.use_x3d_subdirs is false
correctionsParameters.x3dModelVersion,
true, // smart,
true); //newAllowed, // save
String title = image_name+TwoQuadCLT.DSI_COMBO_SUFFIX;
ImagePlus imp = (new ShowDoubleFloatArrays()).makeArrays(dsi,tp.getTilesX(), tp.getTilesY(), title, TwoQuadCLT.DSI_SLICES);
eyesisCorrections.saveAndShow(
imp, // ImagePlus imp,
x3d_path, // String path,
false, // boolean png,
false, // boolean show,
0); // int jpegQuality)
String x3d_path = getX3dDirectory();
String title = image_name+TwoQuadCLT.DSI_COMBO_SUFFIX;
ImagePlus imp = (new ShowDoubleFloatArrays()).makeArrays(dsi,tp.getTilesX(), tp.getTilesY(), title, TwoQuadCLT.DSI_SLICES);
eyesisCorrections.saveAndShow(
imp, // ImagePlus imp,
x3d_path, // String path,
false, // boolean png,
false, // boolean show,
0); // int jpegQuality)
}
public void showDSI(){ showDSI(this.dsi);}
......@@ -1056,11 +1048,7 @@ public class QuadCLTCPU {
public void saveDSIMain(
double [][] dsi) // DSI_SLICES.length
{
String x3d_path= correctionsParameters.selectX3dDirectory( // for x3d and obj
correctionsParameters.getModelName(image_name), // quad timestamp. Will be ignored if correctionsParameters.use_x3d_subdirs is false
correctionsParameters.x3dModelVersion,
true, // smart,
true); //newAllowed, // save
String x3d_path = getX3dDirectory();
String title = image_name+"-DSI_MAIN";
String [] titles = {TwoQuadCLT.DSI_SLICES[TwoQuadCLT.DSI_DISPARITY_MAIN], TwoQuadCLT.DSI_SLICES[TwoQuadCLT.DSI_STRENGTH_MAIN]};
double [][] dsi_main = {dsi[TwoQuadCLT.DSI_DISPARITY_MAIN], dsi[TwoQuadCLT.DSI_STRENGTH_MAIN]};
......@@ -1078,11 +1066,7 @@ public class QuadCLTCPU {
String suffix, // "-DSI_MAIN"
double [][] dsi) // DSI_SLICES.length
{
String x3d_path= correctionsParameters.selectX3dDirectory( // for x3d and obj
correctionsParameters.getModelName(image_name), // quad timestamp. Will be ignored if correctionsParameters.use_x3d_subdirs is false
correctionsParameters.x3dModelVersion,
true, // smart,
true); //newAllowed, // save
String x3d_path = getX3dDirectory();
String title = image_name+suffix; // "-DSI_MAIN";
ImagePlus imp = (new ShowDoubleFloatArrays()).makeArrays(dsi, tp.getTilesX(), tp.getTilesY(), title, TwoQuadCLT.DSI_SLICES);
eyesisCorrections.saveAndShow(
......@@ -1101,11 +1085,7 @@ public class QuadCLTCPU {
QuadCLT quadCLT_aux,
double [][] dsi_aux_from_main)
{
String x3d_path= correctionsParameters.selectX3dDirectory( // for x3d and obj
correctionsParameters.getModelName(image_name), // quad timestamp. Will be ignored if correctionsParameters.use_x3d_subdirs is false
correctionsParameters.x3dModelVersion,
true, // smart,
true); //newAllowed, // save
String x3d_path = getX3dDirectory();
String title = quadCLT_aux.image_name+"-DSI_GT-AUX";
// String [] titles = {DSI_SLICES[DSI_DISPARITY_MAIN], DSI_SLICES[DSI_STRENGTH_MAIN]};
// double [][] dsi_main = {dsi[DSI_DISPARITY_MAIN], dsi[DSI_STRENGTH_MAIN]};
......@@ -5955,11 +5935,7 @@ public class QuadCLTCPU {
}
if (clt_parameters.gen_4_img) {
// Save as individual JPEG images in the model directory
String x3d_path= correctionsParameters.selectX3dDirectory(
image_name, // quad timestamp. Will be ignored if correctionsParameters.use_x3d_subdirs is false
correctionsParameters.x3dModelVersion,
true, // smart,
true); //newAllowed, // save
String x3d_path = getX3dDirectory();
for (int sub_img = 0; sub_img < imps_RGB.length; sub_img++){
EyesisCorrections.saveAndShow(
imps_RGB[sub_img],
......@@ -11047,12 +11023,7 @@ public class QuadCLTCPU {
tp.clt_3d_passes.get(next_pass-1), // CLTPass3d scan,
"after_pass3-"+(next_pass-1)); //String title)
}
String x3d_path= correctionsParameters.selectX3dDirectory( // for x3d and obj
correctionsParameters.getModelName(this.image_name), // quad timestamp. Will be ignored if correctionsParameters.use_x3d_subdirs is false
correctionsParameters.x3dModelVersion,
true, // smart,
true); //newAllowed, // save
String x3d_path = getX3dDirectory();
// create x3d file
if (clt_parameters.output_x3d) {
x3dOutput = new X3dOutput(
......
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