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# This document is a configuration file identifying all file format readers
# available to Bio-Formats, and the order in which they should be used.
# Please do not edit unless you know what you are doing, see
# https://docs.openmicroscopy.org/latest/bio-formats/developers/reader-guide.html
# Could not find loci.formats.in.URLReader
# Could not find loci.formats.in.SlideBook6Reader
# "loci.formats.in.MicroCTReader" is not valid.
# Could not find loci.formats.in.CV7000Reader
# Could not find loci.formats.in.KLBReader
# java.lang.ClassNotFoundException: loci.formats.in.SlideBook6Reader
# at java.net.URLClassLoader.findClass(URLClassLoader.java:382) ~[na:1.8.0_201]
#Elphel readers
com.elphel.imagej.readers.ElphelTiffReader # extensions same as TiffReader
loci.formats.in.FilePatternReader # pattern
##loci.formats.in.URLReader[type=external] # urlreader # Could not find loci.formats.in.URLReader
# readers for compressed/archive files
loci.formats.in.ZipReader # zip
# javax.imageio readers
loci.formats.in.APNGReader # png [javax.imageio]
loci.formats.in.JPEGReader # jpg, jpeg [javax.imageio]
# external readers with unique file extensions
##loci.formats.in.SlideBook6Reader[type=external] # sld # Could not find loci.formats.in.SlideBook6Reader
loci.formats.in.ScreenReader[type=external] # .screen
# standalone readers with unique file extensions
loci.formats.in.PGMReader # pgm
loci.formats.in.FitsReader # fits
loci.formats.in.PCXReader # pcx
loci.formats.in.GIFReader # gif
loci.formats.in.BMPReader # bmp
loci.formats.in.IPLabReader # ipl
loci.formats.in.IvisionReader # ipm
loci.formats.in.DeltavisionReader # dv, r3d
loci.formats.in.MRCReader # mrc, st, ali
loci.formats.in.GatanReader # dm3
loci.formats.in.GatanDM2Reader # dm2
loci.formats.in.ImarisReader # ims
loci.formats.in.OpenlabRawReader # raw
loci.formats.in.OMEXMLReader # ome
loci.formats.in.LIFReader # lif
loci.formats.in.AVIReader # avi
loci.formats.in.PictReader # pict, pct
loci.formats.in.SDTReader # sdt
loci.formats.in.SPCReader # spc
loci.formats.in.EPSReader # eps, epsi
loci.formats.in.SlidebookReader # sld
loci.formats.in.AliconaReader # al3d
loci.formats.in.MNGReader # mng
loci.formats.in.KhorosReader # xv
loci.formats.in.VisitechReader # html, xys
loci.formats.in.LIMReader # lim
loci.formats.in.PSDReader # psd
loci.formats.in.InCellReader # xdce
loci.formats.in.L2DReader # l2d
loci.formats.in.FEIReader # img
loci.formats.in.NAFReader # naf
loci.formats.in.MINCReader # mnc
loci.formats.in.QTReader # mov
loci.formats.in.MRWReader # mrw
loci.formats.in.TillVisionReader # vws
loci.formats.in.ARFReader # arf
loci.formats.in.CellomicsReader # c01
loci.formats.in.LiFlimReader # fli
loci.formats.in.TargaReader # tga
loci.formats.in.OxfordInstrumentsReader # top
loci.formats.in.VGSAMReader # dti
loci.formats.in.HISReader # his
loci.formats.in.WATOPReader # wat
loci.formats.in.SeikoReader # xqd, xqf
loci.formats.in.TopometrixReader # tfr, ffr, zfr, zfp, 2fl
loci.formats.in.UBMReader # pr3
loci.formats.in.QuesantReader # afm
loci.formats.in.BioRadGelReader # 1sc
loci.formats.in.RHKReader # sm2, sm3
loci.formats.in.MolecularImagingReader # stp
loci.formats.in.CellWorxReader # pnl, htd
loci.formats.in.Ecat7Reader # v
loci.formats.in.VarianFDFReader # fdf
loci.formats.in.AIMReader # aim
loci.formats.in.InCell3000Reader # frm
loci.formats.in.SpiderReader # spi
loci.formats.in.VolocityReader # mvd2
loci.formats.in.ImagicReader # hed
loci.formats.in.HamamatsuVMSReader # vms
loci.formats.in.CellSensReader # vsi
loci.formats.in.INRReader # inr
loci.formats.in.KodakReader # bip
loci.formats.in.VolocityClippingReader # acff
loci.formats.in.ZeissCZIReader # czi
loci.formats.in.SIFReader # sif
loci.formats.in.NDPISReader # ndpis
loci.formats.in.PovrayReader # df3
loci.formats.in.IMODReader # mod
loci.formats.in.FakeReader # fake
loci.formats.in.AFIReader # afi
loci.formats.in.ImspectorReader # msr
loci.formats.in.BioRadSCNReader # scn
loci.formats.in.ZeissLMSReader # lms
loci.formats.in.PQBinReader # bin
loci.formats.in.FlowSightReader # cif
loci.formats.in.IM3Reader # im3
loci.formats.in.I2IReader # i2i
loci.formats.in.SPEReader # spe
loci.formats.in.OIRReader # oir
##loci.formats.in.KLBReader # klb # Could not find loci.formats.in.KLBReader
##loci.formats.in.MicroCTReader # vff # "loci.formats.in.MicroCTReader" is not valid.
# multi-extension messes
loci.formats.in.JEOLReader # dat, img, par
loci.formats.in.NiftiReader # hdr, img, nii, nii.gz
loci.formats.in.AnalyzeReader # hdr, img
loci.formats.in.APLReader # apl, mtb, tnb
loci.formats.in.NRRDReader # nrrd, nhdr, pic
loci.formats.in.ICSReader # ics, ids
loci.formats.in.PerkinElmerReader # rec, ano, csv, htm, tim, zpo, 2, 3, ...
loci.formats.in.AmiraReader # am, amiramesh, grey, hx, labels, ...
loci.formats.in.ScanrReader # dat, xml, tif
loci.formats.in.BDReader # exp, tif
loci.formats.in.UnisokuReader # dat, hdr
loci.formats.in.PDSReader # hdr, img
loci.formats.in.FujiReader # inf, img
loci.formats.in.OperettaReader # xml, tif, tiff
loci.formats.in.InveonReader # hdr, ct.img, cat, ...
loci.formats.in.CellVoyagerReader # xml, tif
loci.formats.in.ColumbusReader # xml, tif
##loci.formats.in.CV7000Reader # wpi # Could not find loci.formats.in.CV7000Reader
# standard PIC reader must go last (it accepts any PIC)
loci.formats.in.BioRadReader # pic
# readers requiring third-party libraries
loci.formats.in.FV1000Reader # oib, oif, various [POI]
loci.formats.in.ZeissZVIReader # zvi [POI]
loci.formats.in.IPWReader # ipw [POI]
loci.formats.in.JPEG2000Reader # jp2, j2k [JAI-ImageIO]
loci.formats.in.JPXReader # jpx [JAI-ImageIO]
loci.formats.in.ND2Reader # nd2, jp2 [JAI-ImageIO]
loci.formats.in.PCIReader # cxd [POI]
loci.formats.in.ImarisHDFReader # ims [NetCDF]
loci.formats.in.CellH5Reader # ch5 [JHDF]
loci.formats.in.WlzReader # wlz [JWlz]
loci.formats.in.VeecoReader # hdf [NetCDF]
# TIFF-based readers with unique file extensions
loci.formats.in.ZeissLSMReader # lsm, mdb [MDB Tools]
loci.formats.in.SEQReader # seq
loci.formats.in.GelReader # gel
loci.formats.in.ImarisTiffReader # ims
loci.formats.in.FlexReader # flex [LuraWave]
loci.formats.in.SVSReader # svs
loci.formats.in.ImaconReader # fff
loci.formats.in.LEOReader # sxm
loci.formats.in.JPKReader # jpk
loci.formats.in.NDPIReader # ndpi
loci.formats.in.PCORAWReader # pcoraw
# TIFF-based readers with slow isThisType
loci.formats.in.OMETiffReader # tif
loci.formats.in.PyramidTiffReader # tif, tiff
loci.formats.in.MIASReader # tif
loci.formats.in.TCSReader # xml, tif
loci.formats.in.LeicaReader # lei, tif
loci.formats.in.NikonReader # nef, tif
loci.formats.in.FluoviewReader # tif
loci.formats.in.PrairieReader # xml, cfg, tif
loci.formats.in.MetamorphReader # stk, tif, nd, scan
loci.formats.in.MicromanagerReader # txt, tif
loci.formats.in.ImprovisionTiffReader # tif
loci.formats.in.MetamorphTiffReader # tif
loci.formats.in.NikonTiffReader # tif
loci.formats.in.PhotoshopTiffReader # tif
loci.formats.in.FEITiffReader # tif
loci.formats.in.SimplePCITiffReader # tif
loci.formats.in.NikonElementsTiffReader # tif
loci.formats.in.TrestleReader # tif
loci.formats.in.SISReader # tif
loci.formats.in.DNGReader # cr2, crw, jpg, thm, wav, tif?
loci.formats.in.ZeissTIFFReader # tif
loci.formats.in.LeicaSCNReader # scn
loci.formats.in.VectraReader # tif, tiff, qptiff
loci.formats.in.SlidebookTiffReader # tiff
loci.formats.in.IonpathMIBITiffReader # tif, tiff
# standard TIFF reader must go last (it accepts any TIFF)
loci.formats.in.TiffDelegateReader # tif, tiff
# standard text reader must go last (it accepts any plaintext)
loci.formats.in.TextReader # txt, csv
# non-TIFF readers with slow isThisType
loci.formats.in.BurleighReader # img
loci.formats.in.OpenlabReader # liff
loci.formats.in.DicomReader # dcm, dicom
loci.formats.in.SMCameraReader # (no extension)
loci.formats.in.SBIGReader # (no extension)
loci.formats.in.HRDGDFReader # (no extension)
loci.formats.in.HitachiReader # txt, tif, jpg, bmp
loci.formats.in.BrukerReader # fid, acqp
loci.formats.in.CanonRawReader # cr2, crw, jpg, thm, wav
loci.formats.in.OBFReader # obf, msr