- Bibliography refers to wrong page in the toc
In case of LaTeX the reference in the toc tab to the Bibliography page is not correct.
According to e.g. http://lookherefirst.wordpress.com/2008/10/05/add-the-bibliography-in-the-table-of-contents/
when using the hyperref package the reference of the toc should be after the \bibliography entry.
See to it that the Bibliography page starts at an odd page (like all other chapters)

- See to it that the Index page starts at an odd page (like all other chapters)

- Not all items are shown in the Index / Index generation crashes (Bug_733323) / Index is not shown
The \hypertarget definition contains on 2 places the entire string (including section references and index references) in the caption part.
In all other places the caption is empty and the caption part is not used (as a reference) in the \hyperlink command. The caption has been made empty/

Bug 735481 - [PATCH] Mismatch in memory allocation/de-allocation function in vhdlparser/vhdlstring.h

Create an easy possibility to take a snippet from the current file.

Better handling of inline Fortran parameter documentation

Bug 651859 - Brief description misplaced in man page output

Also fixed a parse error when reading a tag file with a Java-style enum

Bug 651850 - @defgroup generates manpage warning

In case the comment for Fortran arguments is empty or just contains @param [direction] <varname> or parts of these. The comment is is not shown and (depending on the configuration settings, a warning is given).
Also the detection of inconsistencies between intent attribute and documentation has been improved.

In case the \cite command is used but no entry for it is given in a bib file no warning is given as the CiteInfo entry is present with the right label, but the text item is empty and this is not tested.

(also corrected an error message on opening a file)