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python3-imagej-tiff
Commit 4a86586e authored by Andrey Filippov's avatar Andrey Filippov
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just a shapshot

parent c7de630a
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Showing with 8 additions and 4 deletions
explore_data.py
View file @ 4a86586e
...@@ -715,7 +715,7 @@ if __name__ == "__main__": ...@@ -715,7 +715,7 @@ if __name__ == "__main__":
try: try:
pathTFR = sys.argv[3] pathTFR = sys.argv[3]
except IndexError: except IndexError:
pathTFR = "/mnt/dde6f983-d149-435e-b4a2-88749245cc6c/home/eyesis/x3d_data/data_sets/tf_data_3x3a" #no trailing "/" pathTFR = "/mnt/dde6f983-d149-435e-b4a2-88749245cc6c/home/eyesis/x3d_data/data_sets/tf_data_3x3b" #no trailing "/"
try: try:
ml_subdir = sys.argv[4] ml_subdir = sys.argv[4]
......
nn_ds_neibs.py
View file @ 4a86586e
...@@ -48,7 +48,7 @@ BATCH_SIZE = 2*1080//9 # == 120 Each batch of tiles has balanced D/S tiles ...@@ -48,7 +48,7 @@ BATCH_SIZE = 2*1080//9 # == 120 Each batch of tiles has balanced D/S tiles
SHUFFLE_EPOCH = True SHUFFLE_EPOCH = True
NET_ARCH1 = 4# 3 # overwrite with argv? NET_ARCH1 = 4# 3 # overwrite with argv?
NET_ARCH2 = 0# 3 # overwrite with argv? NET_ARCH2 = 0# 3 # overwrite with argv?
ONLY_TILE = 4 # 4# None # (remove all but center tile data), put None here for normal operation) ONLY_TILE = None # 0 # 4# None # (remove all but center tile data), put None here for normal operation)
#DEBUG_PACK_TILES = True #DEBUG_PACK_TILES = True
...@@ -168,7 +168,9 @@ except IndexError: ...@@ -168,7 +168,9 @@ except IndexError:
#FILES_PER_SCENE #FILES_PER_SCENE
train_filenameTFR1 = "/mnt/dde6f983-d149-435e-b4a2-88749245cc6c/home/eyesis/x3d_data/data_sets/tf_data/train_01.tfrecords" train_filenameTFR1 = "/mnt/dde6f983-d149-435e-b4a2-88749245cc6c/home/eyesis/x3d_data/data_sets/tf_data/train_01.tfrecords"
files_train_lvar = ["/home/eyesis/x3d_data/data_sets/tf_data_3x3/train-000_R1_LE_1.5.tfrecords", files_train_lvar = ["/home/eyesis/x3d_data/data_sets/tf_data_3x3a/train000_R1_LE_1.5.tfrecords"]
"""
"/home/eyesis/x3d_data/data_sets/tf_data_3x3/train-000_R1_LE_1.5.tfrecords",
"/home/eyesis/x3d_data/data_sets/tf_data_3x3/train-001_R1_LE_1.5.tfrecords", "/home/eyesis/x3d_data/data_sets/tf_data_3x3/train-001_R1_LE_1.5.tfrecords",
"/home/eyesis/x3d_data/data_sets/tf_data_3x3/train-002_R1_LE_1.5.tfrecords", "/home/eyesis/x3d_data/data_sets/tf_data_3x3/train-002_R1_LE_1.5.tfrecords",
"/home/eyesis/x3d_data/data_sets/tf_data_3x3/train-003_R1_LE_1.5.tfrecords", "/home/eyesis/x3d_data/data_sets/tf_data_3x3/train-003_R1_LE_1.5.tfrecords",
...@@ -176,11 +178,13 @@ files_train_lvar = ["/home/eyesis/x3d_data/data_sets/tf_data_3x3/train-000_R1_LE ...@@ -176,11 +178,13 @@ files_train_lvar = ["/home/eyesis/x3d_data/data_sets/tf_data_3x3/train-000_R1_LE
"/home/eyesis/x3d_data/data_sets/tf_data_3x3/train-005_R1_LE_1.5.tfrecords", "/home/eyesis/x3d_data/data_sets/tf_data_3x3/train-005_R1_LE_1.5.tfrecords",
"/home/eyesis/x3d_data/data_sets/tf_data_3x3/train-006_R1_LE_1.5.tfrecords", "/home/eyesis/x3d_data/data_sets/tf_data_3x3/train-006_R1_LE_1.5.tfrecords",
"/home/eyesis/x3d_data/data_sets/tf_data_3x3/train-007_R1_LE_1.5.tfrecords"] "/home/eyesis/x3d_data/data_sets/tf_data_3x3/train-007_R1_LE_1.5.tfrecords"]
"""
#files_train_hvar = ["/home/eyesis/x3d_data/data_sets/tf_data_3x3/train-000_R1_LE_1.5.tfrecords", #files_train_hvar = ["/home/eyesis/x3d_data/data_sets/tf_data_3x3/train-000_R1_LE_1.5.tfrecords",
# "/home/eyesis/x3d_data/data_sets/tf_data_3x3/train-001_R1_LE_1.5.tfrecords"] # "/home/eyesis/x3d_data/data_sets/tf_data_3x3/train-001_R1_LE_1.5.tfrecords"]
files_train_hvar = [] files_train_hvar = []
file_test_lvar= "/home/eyesis/x3d_data/data_sets/tf_data_3x3/test-TEST_R1_LE_1.5.tfrecords" # "/home/eyesis/x3d_data/data_sets/train-000_R1_LE_1.5.tfrecords" #file_test_lvar= "/home/eyesis/x3d_data/data_sets/tf_data_3x3/test-TEST_R1_LE_1.5.tfrecords" # "/home/eyesis/x3d_data/data_sets/train-000_R1_LE_1.5.tfrecords"
file_test_lvar= "/home/eyesis/x3d_data/data_sets/tf_data_3x3a/train000_R1_LE_1.5.tfrecords" # "/home/eyesis/x3d_data/data_sets/train-000_R1_LE_1.5.tfrecords"
file_test_hvar= None # "/home/eyesis/x3d_data/data_sets/tf_data_3x3/train-002_R1_LE_1.5.tfrecords" # "/home/eyesis/x3d_data/data_sets/train-000_R1_LE_1.5.tfrecords" file_test_hvar= None # "/home/eyesis/x3d_data/data_sets/tf_data_3x3/train-002_R1_LE_1.5.tfrecords" # "/home/eyesis/x3d_data/data_sets/train-000_R1_LE_1.5.tfrecords"
weight_hvar = 0.13 weight_hvar = 0.13
weight_lvar = 1.0 - weight_hvar weight_lvar = 1.0 - weight_hvar
......
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