updated from master

.gitignore

@@ -9,7 +9,9 @@ sysroots
 .externalToolBuilders
 .settings
 .pydevproject
-
+html
+*.directory
+doxygen.tag
 # auto-generated files from x393 project
 src/drivers/elphel/x393.c
 src/drivers/elphel/x393.h

linux-elphel.Doxyfile

+# Doxyfile 1.8.7
+
+#---------------------------------------------------------------------------
+# Project related configuration options
+#---------------------------------------------------------------------------
+DOXYFILE_ENCODING = UTF-8
+PROJECT_NAME = linux-elphel
+PROJECT_NUMBER = 
+PROJECT_BRIEF = 
+PROJECT_LOGO = 
+OUTPUT_DIRECTORY = 
+CREATE_SUBDIRS = NO
+ALLOW_UNICODE_NAMES = NO
+OUTPUT_LANGUAGE = English
+BRIEF_MEMBER_DESC = YES
+REPEAT_BRIEF = YES
+ABBREVIATE_BRIEF = 
+ALWAYS_DETAILED_SEC = NO
+INLINE_INHERITED_MEMB = NO
+FULL_PATH_NAMES = YES
+STRIP_FROM_PATH = 
+STRIP_FROM_INC_PATH = 
+SHORT_NAMES = NO
+JAVADOC_AUTOBRIEF = YES
+QT_AUTOBRIEF = NO
+MULTILINE_CPP_IS_BRIEF = NO
+INHERIT_DOCS = YES
+SEPARATE_MEMBER_PAGES = NO
+TAB_SIZE = 8
+ALIASES = 
+TCL_SUBST = 
+OPTIMIZE_OUTPUT_FOR_C = YES
+OPTIMIZE_OUTPUT_JAVA = YES
+OPTIMIZE_FOR_FORTRAN = NO
+OPTIMIZE_OUTPUT_VHDL = NO
+EXTENSION_MAPPING = 
+MARKDOWN_SUPPORT = YES
+TOC_INCLUDE_HEADINGS = 
+AUTOLINK_SUPPORT = YES
+BUILTIN_STL_SUPPORT = NO
+CPP_CLI_SUPPORT = NO
+SIP_SUPPORT = NO
+IDL_PROPERTY_SUPPORT = YES
+DISTRIBUTE_GROUP_DOC = NO
+SUBGROUPING = YES
+INLINE_GROUPED_CLASSES = YES
+INLINE_SIMPLE_STRUCTS = YES
+TYPEDEF_HIDES_STRUCT = NO
+LOOKUP_CACHE_SIZE = 0
+#---------------------------------------------------------------------------
+# Build related configuration options
+#---------------------------------------------------------------------------
+EXTRACT_ALL = YES
+EXTRACT_PRIVATE = YES
+EXTRACT_PACKAGE = NO
+EXTRACT_STATIC = YES
+EXTRACT_LOCAL_CLASSES = YES
+EXTRACT_LOCAL_METHODS = NO
+EXTRACT_ANON_NSPACES = NO
+HIDE_UNDOC_MEMBERS = NO
+HIDE_UNDOC_CLASSES = NO
+HIDE_FRIEND_COMPOUNDS = NO
+HIDE_IN_BODY_DOCS = NO
+INTERNAL_DOCS = NO
+CASE_SENSE_NAMES = NO
+HIDE_SCOPE_NAMES = NO
+SHOW_INCLUDE_FILES = YES
+SHOW_GROUPED_MEMB_INC = NO
+FORCE_LOCAL_INCLUDES = NO
+INLINE_INFO = YES
+SORT_MEMBER_DOCS = YES
+SORT_BRIEF_DOCS = NO
+SORT_MEMBERS_CTORS_1ST = NO
+SORT_GROUP_NAMES = NO
+SORT_BY_SCOPE_NAME = NO
+STRICT_PROTO_MATCHING = NO
+GENERATE_TODOLIST = YES
+GENERATE_TESTLIST = YES
+GENERATE_BUGLIST = YES
+GENERATE_DEPRECATEDLIST = YES
+ENABLED_SECTIONS = 
+MAX_INITIALIZER_LINES = 30
+SHOW_USED_FILES = YES
+SHOW_FILES = YES
+SHOW_NAMESPACES = YES
+FILE_VERSION_FILTER = 
+LAYOUT_FILE = 
+CITE_BIB_FILES = 
+#---------------------------------------------------------------------------
+# Configuration options related to warning and progress messages
+#---------------------------------------------------------------------------
+QUIET = NO
+WARNINGS = YES
+WARN_IF_UNDOCUMENTED = YES
+WARN_IF_DOC_ERROR = YES
+WARN_NO_PARAMDOC = NO
+WARN_FORMAT = "$file:$line: $text "
+WARN_LOGFILE = 
+#---------------------------------------------------------------------------
+# Configuration options related to the input files
+#---------------------------------------------------------------------------
+INPUT = linux/source/drivers/elphel linux/source/drivers/ata/ahci_elphel.c linux/source/drivers/clk/clk-si5338.c linux/source/drivers/misc/ltc3589.c linux/source/drivers/misc/vsc330x.c linux/source/drivers/mmc/host/sdhci.c linux/source/drivers/mmc/host/sdhci.h linux/source/drivers/mtd/nand/nand_base.c linux/source/drivers/mtd/nand/nand.h linux/source/drivers/mtd/nand/nandchip-micron.c linux/source/drivers/mtd/nand/pl35x-nand.c linux/source/include/elphel linux/source/include/linux/i2c/ltc3589.h
+INPUT_ENCODING = UTF-8
+FILE_PATTERNS = *.h *.cpp *.md
+RECURSIVE = YES
+EXCLUDE = src/logos.cpp src/lodepng.cpp
+EXCLUDE_SYMLINKS = NO
+EXCLUDE_PATTERNS = 
+EXCLUDE_SYMBOLS = 
+EXAMPLE_PATH = 
+EXAMPLE_PATTERNS = 
+EXAMPLE_RECURSIVE = NO
+IMAGE_PATH = 
+INPUT_FILTER = 
+FILTER_PATTERNS = 
+FILTER_SOURCE_FILES = NO
+FILTER_SOURCE_PATTERNS = 
+USE_MDFILE_AS_MAINPAGE = 
+#---------------------------------------------------------------------------
+# Configuration options related to source browsing
+#---------------------------------------------------------------------------
+SOURCE_BROWSER = YES
+INLINE_SOURCES = YES
+STRIP_CODE_COMMENTS = NO
+REFERENCED_BY_RELATION = YES
+REFERENCES_RELATION = YES
+REFERENCES_LINK_SOURCE = YES
+SOURCE_TOOLTIPS = YES
+USE_HTAGS = NO
+VERBATIM_HEADERS = YES
+#---------------------------------------------------------------------------
+# Configuration options related to the alphabetical class index
+#---------------------------------------------------------------------------
+ALPHABETICAL_INDEX = YES
+COLS_IN_ALPHA_INDEX = 5
+IGNORE_PREFIX = 
+#---------------------------------------------------------------------------
+# Configuration options related to the HTML output
+#---------------------------------------------------------------------------
+GENERATE_HTML = YES
+HTML_OUTPUT = 
+HTML_FILE_EXTENSION = .html
+HTML_HEADER = 
+HTML_FOOTER = 
+HTML_STYLESHEET = 
+HTML_EXTRA_STYLESHEET = 
+HTML_EXTRA_FILES = 
+HTML_COLORSTYLE_HUE = 220
+HTML_COLORSTYLE_SAT = 100
+HTML_COLORSTYLE_GAMMA = 80
+HTML_TIMESTAMP = YES
+HTML_DYNAMIC_SECTIONS = YES
+HTML_INDEX_NUM_ENTRIES = 100
+GENERATE_DOCSET = YES
+DOCSET_FEEDNAME = "Doxygen docs"
+DOCSET_BUNDLE_ID = org.doxygen.Doxygen
+DOCSET_PUBLISHER_ID = org.doxygen.Publisher
+DOCSET_PUBLISHER_NAME = Publisher
+GENERATE_HTMLHELP = NO
+CHM_FILE = 
+HHC_LOCATION = 
+GENERATE_CHI = NO
+CHM_INDEX_ENCODING = 
+BINARY_TOC = NO
+TOC_EXPAND = NO
+GENERATE_QHP = NO
+QCH_FILE = 
+QHP_NAMESPACE = org.doxygen.Project
+QHP_VIRTUAL_FOLDER = doc
+QHP_CUST_FILTER_NAME = 
+QHP_CUST_FILTER_ATTRS = 
+QHP_SECT_FILTER_ATTRS = 
+QHG_LOCATION = 
+GENERATE_ECLIPSEHELP = NO
+ECLIPSE_DOC_ID = org.doxygen.Project
+DISABLE_INDEX = NO
+GENERATE_TREEVIEW = YES
+ENUM_VALUES_PER_LINE = 4
+TREEVIEW_WIDTH = 250
+EXT_LINKS_IN_WINDOW = NO
+FORMULA_FONTSIZE = 10
+FORMULA_TRANSPARENT = YES
+USE_MATHJAX = NO
+MATHJAX_FORMAT = HTML-CSS
+MATHJAX_RELPATH = http://cdn.mathjax.org/mathjax/latest
+MATHJAX_EXTENSIONS = 
+MATHJAX_CODEFILE = 
+SEARCHENGINE = YES
+SERVER_BASED_SEARCH = YES
+EXTERNAL_SEARCH = NO
+SEARCHENGINE_URL = 
+SEARCHDATA_FILE = searchdata.xml
+EXTERNAL_SEARCH_ID = 
+EXTRA_SEARCH_MAPPINGS = 
+#---------------------------------------------------------------------------
+# Configuration options related to the LaTeX output
+#---------------------------------------------------------------------------
+GENERATE_LATEX = NO
+LATEX_OUTPUT = 
+LATEX_CMD_NAME = latex
+MAKEINDEX_CMD_NAME = makeindex
+COMPACT_LATEX = NO
+PAPER_TYPE = a4wide
+EXTRA_PACKAGES = 
+LATEX_HEADER = 
+LATEX_FOOTER = 
+LATEX_EXTRA_FILES = 
+PDF_HYPERLINKS = YES
+USE_PDFLATEX = NO
+LATEX_BATCHMODE = NO
+LATEX_HIDE_INDICES = NO
+LATEX_SOURCE_CODE = NO
+LATEX_BIB_STYLE = plain
+#---------------------------------------------------------------------------
+# Configuration options related to the RTF output
+#---------------------------------------------------------------------------
+GENERATE_RTF = NO
+RTF_OUTPUT = 
+COMPACT_RTF = NO
+RTF_HYPERLINKS = NO
+RTF_STYLESHEET_FILE = 
+RTF_EXTENSIONS_FILE = 
+#---------------------------------------------------------------------------
+# Configuration options related to the man page output
+#---------------------------------------------------------------------------
+GENERATE_MAN = NO
+MAN_OUTPUT = 
+MAN_EXTENSION = .3
+MAN_SUBDIR = 
+MAN_LINKS = NO
+#---------------------------------------------------------------------------
+# Configuration options related to the XML output
+#---------------------------------------------------------------------------
+GENERATE_XML = NO
+XML_OUTPUT = xml
+XML_PROGRAMLISTING = YES
+#---------------------------------------------------------------------------
+# Configuration options related to the DOCBOOK output
+#---------------------------------------------------------------------------
+GENERATE_DOCBOOK = NO
+DOCBOOK_OUTPUT = docbook
+DOCBOOK_PROGRAMLISTING = NO
+#---------------------------------------------------------------------------
+# Configuration options for the AutoGen Definitions output
+#---------------------------------------------------------------------------
+GENERATE_AUTOGEN_DEF = NO
+#---------------------------------------------------------------------------
+# Configuration options related to the Perl module output
+#---------------------------------------------------------------------------
+GENERATE_PERLMOD = NO
+PERLMOD_LATEX = NO
+PERLMOD_PRETTY = YES
+PERLMOD_MAKEVAR_PREFIX = 
+#---------------------------------------------------------------------------
+# Configuration options related to the preprocessor
+#---------------------------------------------------------------------------
+ENABLE_PREPROCESSING = YES
+MACRO_EXPANSION = YES
+EXPAND_ONLY_PREDEF = YES
+SEARCH_INCLUDES = YES
+INCLUDE_PATH = qtools libmd5
+INCLUDE_FILE_PATTERNS = 
+PREDEFINED = 
+EXPAND_AS_DEFINED = 
+SKIP_FUNCTION_MACROS = YES
+#---------------------------------------------------------------------------
+# Configuration options related to external references
+#---------------------------------------------------------------------------
+TAGFILES = qtools_docs/qtools.tag=../../qtools_docs/html
+GENERATE_TAGFILE = doxygen.tag
+ALLEXTERNALS = NO
+EXTERNAL_GROUPS = YES
+EXTERNAL_PAGES = YES
+PERL_PATH = /usr/bin/perl
+#---------------------------------------------------------------------------
+# Configuration options related to the dot tool
+#---------------------------------------------------------------------------
+CLASS_DIAGRAMS = NO
+MSCGEN_PATH = 
+DIA_PATH = 
+HIDE_UNDOC_RELATIONS = YES
+HAVE_DOT = YES
+DOT_NUM_THREADS = 0
+DOT_FONTNAME = Helvetica
+DOT_FONTSIZE = 10
+DOT_FONTPATH = 
+CLASS_GRAPH = YES
+COLLABORATION_GRAPH = YES
+GROUP_GRAPHS = YES
+UML_LOOK = NO
+UML_LIMIT_NUM_FIELDS = 10
+TEMPLATE_RELATIONS = YES
+INCLUDE_GRAPH = YES
+INCLUDED_BY_GRAPH = YES
+CALL_GRAPH = NO
+CALLER_GRAPH = NO
+GRAPHICAL_HIERARCHY = YES
+DIRECTORY_GRAPH = YES
+DOT_IMAGE_FORMAT = svg
+INTERACTIVE_SVG = YES
+DOT_PATH = 
+DOTFILE_DIRS = 
+MSCFILE_DIRS = 
+DIAFILE_DIRS = 
+PLANTUML_JAR_PATH = 
+DOT_GRAPH_MAX_NODES = 50
+MAX_DOT_GRAPH_DEPTH = 0
+DOT_TRANSPARENT = NO
+DOT_MULTI_TARGETS = NO
+GENERATE_LEGEND = YES
+DOT_CLEANUP = NO