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Commit db512370 authored by Andrey Filippov's avatar Andrey Filippov
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testing witgh Eyesis

parent 148f05fc
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Showing with 1336 additions and 1621 deletions
src/main/java/EyesisCorrectionParameters.java
View file @ db512370
......@@ -101,7 +101,7 @@ public class EyesisCorrectionParameters {
public boolean planeAsJPEG= true; // save de-warped image as JPEG (only if equirectangularFormat==0)
// public String equirectangularSuffixA="A.eqr-tiff"; // or the roll-over part
public String resultsDirectory="";
public boolean removeUnusedSensorData=true;
public boolean removeUnusedSensorData=false;
public int exposureCorrectionMode=2; // - 0 - none, 1 - absolute, 2 - relative
public double referenceExposure=0.0003; // 3/10000 sec, used in absolute mode only
public double relativeExposure=0.5; // 0.0 - use shortest (darken), 1.0 - use longest (brighten)
......@@ -1795,7 +1795,6 @@ public class EyesisCorrectionParameters {
public double decimateSigma = -1.0; // special mode for 2:1 deciamtion
public int tileX = 82; // number of kernel tile (0..163)
public int tileY = 62; // number of kernel tile (0..122)
public boolean subtract_dc = false;// subtract/restore dc
public int kernel_chn = -1; // camera channel calibration to use for aberration correction ( < 0 - no correction)
public boolean normalize = true; // normalize both sym and asym kernels (asym to have sum==1, sym to have sum = dct_size
public boolean normalize_sym = true; // normalize sym kernels separately
......@@ -1808,6 +1807,10 @@ public class EyesisCorrectionParameters {
public double novignetting_g = 0.3733; // green gain in the center of sensor calibration G
public double novignetting_b = 0.2034; // blue gain in the center of sensor calibration B
public double scale_r = 1.0; // extra gain correction after vignetting or nonvignetting, before other processing
public double scale_g = 1.0;
public double scale_b = 1.0;
public double vignetting_max = 0.4; // value in vignetting data to correspond to 1x in the kernel
public double vignetting_range = 5.0; // do not try to correct vignetting less than vignetting_max/vignetting_range
......@@ -1877,7 +1880,6 @@ public class EyesisCorrectionParameters {
properties.setProperty(prefix+"decimateSigma", this.decimateSigma+"");
properties.setProperty(prefix+"tileX", this.tileX+"");
properties.setProperty(prefix+"tileY", this.tileY+"");
properties.setProperty(prefix+"subtract_dc", this.subtract_dc+"");
properties.setProperty(prefix+"kernel_chn", this.kernel_chn+"");
properties.setProperty(prefix+"normalize", this.normalize+"");
properties.setProperty(prefix+"normalize_sym", this.normalize_sym+"");
......@@ -1889,6 +1891,12 @@ public class EyesisCorrectionParameters {
properties.setProperty(prefix+"novignetting_g", this.novignetting_g+"");
properties.setProperty(prefix+"novignetting_b", this.novignetting_b+"");
properties.setProperty(prefix+"scale_r", this.scale_r+"");
properties.setProperty(prefix+"scale_g", this.scale_g+"");
properties.setProperty(prefix+"scale_b", this.scale_b+"");
properties.setProperty(prefix+"vignetting_max", this.vignetting_max+"");
properties.setProperty(prefix+"vignetting_range", this.vignetting_range+"");
properties.setProperty(prefix+"color_DCT", this.color_DCT+"");
......@@ -1941,7 +1949,6 @@ public class EyesisCorrectionParameters {
if (properties.getProperty(prefix+"tileX")!=null) this.tileX=Integer.parseInt(properties.getProperty(prefix+"tileX"));
if (properties.getProperty(prefix+"tileY")!=null) this.tileY=Integer.parseInt(properties.getProperty(prefix+"tileY"));
if (properties.getProperty(prefix+"dbg_window_mode")!=null) this.dbg_window_mode=Integer.parseInt(properties.getProperty(prefix+"dbg_window_mode"));
if (properties.getProperty(prefix+"subtract_dc")!=null) this.subtract_dc=Boolean.parseBoolean(properties.getProperty(prefix+"subtract_dc"));
if (properties.getProperty(prefix+"kernel_chn")!=null) this.kernel_chn=Integer.parseInt(properties.getProperty(prefix+"kernel_chn"));
if (properties.getProperty(prefix+"normalize")!=null) this.normalize=Boolean.parseBoolean(properties.getProperty(prefix+"normalize"));
if (properties.getProperty(prefix+"normalize_sym")!=null) this.normalize_sym=Boolean.parseBoolean(properties.getProperty(prefix+"normalize_sym"));
......@@ -1953,6 +1960,11 @@ public class EyesisCorrectionParameters {
if (properties.getProperty(prefix+"novignetting_g")!=null) this.novignetting_g=Double.parseDouble(properties.getProperty(prefix+"novignetting_g"));
if (properties.getProperty(prefix+"novignetting_b")!=null) this.novignetting_b=Double.parseDouble(properties.getProperty(prefix+"novignetting_b"));
if (properties.getProperty(prefix+"scale_r")!=null) this.scale_r=Double.parseDouble(properties.getProperty(prefix+"scale_r"));
if (properties.getProperty(prefix+"scale_g")!=null) this.scale_g=Double.parseDouble(properties.getProperty(prefix+"scale_g"));
if (properties.getProperty(prefix+"scale_b")!=null) this.scale_b=Double.parseDouble(properties.getProperty(prefix+"scale_b"));
if (properties.getProperty(prefix+"vignetting_max")!=null) this.vignetting_max=Double.parseDouble(properties.getProperty(prefix+"vignetting_max"));
if (properties.getProperty(prefix+"vignetting_range")!=null) this.vignetting_range=Double.parseDouble(properties.getProperty(prefix+"vignetting_range"));
if (properties.getProperty(prefix+"color_DCT")!=null) this.color_DCT=Boolean.parseBoolean(properties.getProperty(prefix+"color_DCT"));
......@@ -2004,7 +2016,6 @@ public class EyesisCorrectionParameters {
gd.addNumericField("Smooth convolution kernel before decimation", this.decimateSigma, 3);
gd.addNumericField("Tile X to extract (0..163)", this.tileX, 0);
gd.addNumericField("Tile Y to extract (0..122)", this.tileY, 0);
gd.addCheckbox ("Subtract avarege before dct, restore after idct", this.subtract_dc);
gd.addNumericField("Calibration channel to use for aberration ( <0 - no correction)",this.kernel_chn, 0);
gd.addCheckbox ("Normalize both sym and asym kernels ", this.normalize);
gd.addCheckbox ("Normalize sym kernels separately", this.normalize_sym);
......@@ -2016,9 +2027,13 @@ public class EyesisCorrectionParameters {
gd.addNumericField("Green gain in the center of sensor calibration G (instead of vignetting)",this.novignetting_g, 4);
gd.addNumericField("Blue gain in the center of sensor calibration B (instead of vignetting)",this.novignetting_b, 4);
gd.addNumericField("Value (max) in vignetting data to correspond to 1x in the kernel",this.vignetting_max, 3);
gd.addNumericField("Do not try to correct vignetting smaller than this fraction of max",this.vignetting_range, 3);
gd.addCheckbox ("Use DCT-base color conversion", this.color_DCT );
gd.addNumericField("Extra red correction to compensate for light temperature", this.scale_r, 4);
gd.addNumericField("Extra green correction to compensate for light temperature", this.scale_g, 4);
gd.addNumericField("Extra blue correction to compensate for light temperature", this.scale_b, 4);
gd.addNumericField("Value (max) in vignetting data to correspond to 1x in the kernel", this.vignetting_max, 3);
gd.addNumericField("Do not try to correct vignetting smaller than this fraction of max", this.vignetting_range, 3);
gd.addCheckbox ("Use DCT-based color conversion (false - just LPF RGB with dbg_sigma)",this.color_DCT );
gd.addNumericField("Gaussian sigma to apply to R and B (in addition to G), pix", this.sigma_rb, 3);
gd.addNumericField("Gaussian sigma to apply to Y in the MDCT domain, pix", this.sigma_y, 3);
gd.addNumericField("Gaussian sigma to apply to Pr and Pb in the MDCT domain, pix", this.sigma_color, 3);
......@@ -2067,7 +2082,6 @@ public class EyesisCorrectionParameters {
this.decimateSigma= gd.getNextNumber();
this.tileX= (int) gd.getNextNumber();
this.tileY= (int) gd.getNextNumber();
this.subtract_dc= gd.getNextBoolean();
this.kernel_chn= (int) gd.getNextNumber();
this.normalize= gd.getNextBoolean();
this.normalize_sym= gd.getNextBoolean();
......@@ -2077,6 +2091,12 @@ public class EyesisCorrectionParameters {
this.novignetting_r= gd.getNextNumber();
this.novignetting_g= gd.getNextNumber();
this.novignetting_b= gd.getNextNumber();
this.scale_r= gd.getNextNumber();
this.scale_g= gd.getNextNumber();
this.scale_b= gd.getNextNumber();
this.vignetting_max= gd.getNextNumber();
this.vignetting_range= gd.getNextNumber();
this.color_DCT= gd.getNextBoolean();
......
src/main/java/EyesisCorrections.java
View file @ db512370
......@@ -107,16 +107,6 @@ public class EyesisCorrections {
//if ((this.debugLevel>1) && (correctionsParameters.sourcePaths!=null) && (correctionsParameters.sourcePaths.length>0)) {
if ((this.debugLevel>101) && (correctionsParameters.sourcePaths!=null) && (correctionsParameters.sourcePaths.length>0)) {
testFF(correctionsParameters.sourcePaths[0]);
// this.channelVignettingCorrection[srcChannel]=this.pixelMapping.getBayerFlatFieldFloat(
/*
SDFA_INSTANCE.showArrays(
this.channelVignettingCorrection,
this.channelWidthHeight[srcChannel][0],
this.channelWidthHeight[srcChannel][1],
true,
"Flat-Field");
//LENS_DISTORTIONS.displayGridTitles());
*/
}
}
......
src/main/java/EyesisDCT.java
View file @ db512370
This diff is collapsed.
src/main/java/Eyesis_Correction.java
View file @ db512370
......@@ -454,7 +454,6 @@ private Panel panel1,panel2,panel3,panel4,panel5,panel5a, panel6,panel7,panelPos
addButton("DCT test 1", panelDct1, color_process);
addButton("select MDCT image", panelDct1, color_configure);
addButton("MDCT stack", panelDct1, color_process);
addButton("MDCT DC stack", panelDct1, color_process);
addButton("DCT test 3", panelDct1, color_process);
addButton("DCT test 4", panelDct1, color_process);
addButton("Test Kernel Factorization", panelDct1, color_process);
......@@ -462,6 +461,7 @@ private Panel panel1,panel2,panel3,panel4,panel5,panel5a, panel6,panel7,panelPos
addButton("Select kernels image", panelDct1, color_configure);
addButton("Create DCT kernels", panelDct1, color_process);
addButton("Read DCT kernels", panelDct1, color_process);
addButton("Reset DCT kernels", panelDct1, color_stop);
addButton("Setup DCT parameters", panelDct1, color_configure);
addButton("DCT process files", panelDct1, color_process);
add(panelDct1);
......@@ -2627,70 +2627,8 @@ private Panel panel1,panel2,panel3,panel4,panel5,panel5a, panel6,panel7,panelPos
DBG_IMP = imp_src;
}
/* ======================================================================== */
} else if (label.equals("MDCT stack")) {
DEBUG_LEVEL=MASTER_DEBUG_LEVEL;
// IJ.showMessage("DCT test 1");
if (!DCT_PARAMETERS.showDialog()) return;
// process selected image stack
if (DBG_IMP == null) {
ImagePlus imp_src = WindowManager.getCurrentImage();
if (imp_src==null){
IJ.showMessage("Error","JP4 image or Bayer image stack required");
return;
}
// ImagePlus imp2;
if (imp_src.getStackSize()<3){ // convert JP4 to image stack
EyesisCorrectionParameters.SplitParameters split_parameters = new EyesisCorrectionParameters.SplitParameters(
1, // oversample;
// Add just for mdct (N/2)
DCT_PARAMETERS.dct_size/2, // addLeft
DCT_PARAMETERS.dct_size/2, // addTop
DCT_PARAMETERS.dct_size/2, // addRight
DCT_PARAMETERS.dct_size/2 // addBottom
);
ImageStack sourceStack= bayerToStack(imp_src, // source Bayer image, linearized, 32-bit (float))
split_parameters);
DBG_IMP = new ImagePlus(imp_src.getTitle()+"-SPIT", sourceStack);
DBG_IMP.getProcessor().resetMinAndMax();
DBG_IMP.show();
} else {
DBG_IMP = imp_src;
}
}
ImageDtt image_dtt = new ImageDtt();
double [][] dct_data = image_dtt.mdctStack(DBG_IMP.getStack(),
DCT_PARAMETERS,
THREADS_MAX, DEBUG_LEVEL, UPDATE_STATUS);
int tilesY = DBG_IMP.getHeight()/DCT_PARAMETERS.dct_size - 1;
int tilesX = DBG_IMP.getWidth()/DCT_PARAMETERS.dct_size - 1;
System.out.println("tilesX="+tilesX);
System.out.println("tilesY="+tilesY);
SDFA_INSTANCE.showArrays(dct_data,
tilesX*DCT_PARAMETERS.dct_size,
tilesY*DCT_PARAMETERS.dct_size,
true,
DBG_IMP.getTitle()+"-DCT");
double [][] idct_data = new double [dct_data.length][];
for (int chn=0; chn<idct_data.length;chn++){
idct_data[chn] = image_dtt.lapped_idct(
dct_data[chn], // scanline representation of dcd data, organized as dct_size x dct_size tiles
tilesX*DCT_PARAMETERS.dct_size, // dct_width,
DCT_PARAMETERS.dct_size, // final int
DCT_PARAMETERS.dct_window, //window_type
THREADS_MAX, // maximal number of threads to launch
DEBUG_LEVEL); // globalDebugLevel)
}
SDFA_INSTANCE.showArrays(idct_data,
(tilesX + 1) * DCT_PARAMETERS.dct_size,
(tilesY + 1) * DCT_PARAMETERS.dct_size,
true,
DBG_IMP.getTitle()+"-IDCT");
return;
/* ======================================================================== */
} else if (label.equals("MDCT DC stack")) {
} else if (label.equals("MDCT stack")) {
DEBUG_LEVEL=MASTER_DEBUG_LEVEL;
// IJ.showMessage("DCT test 1");
if (!DCT_PARAMETERS.showDialog()) return;
......@@ -2725,8 +2663,9 @@ private Panel panel1,panel2,panel3,panel4,panel5,panel5a, panel6,panel7,panelPos
}
ImageDtt image_dtt = new ImageDtt();
double [][][][] dctdc_data = image_dtt.mdctDcStack(
double [][][][] dctdc_data = image_dtt.mdctStack(
DBG_IMP.getStack(),
DCT_PARAMETERS.kernel_chn,
DCT_PARAMETERS,
EYESIS_DCT,
THREADS_MAX, DEBUG_LEVEL, UPDATE_STATUS);
......@@ -2743,36 +2682,24 @@ private Panel panel1,panel2,panel3,panel4,panel5,panel5a, panel6,panel7,panelPos
int tilesX = DBG_IMP.getWidth()/DCT_PARAMETERS.dct_size - 1;
System.out.println("tilesX="+tilesX);
System.out.println("tilesY="+tilesY);
double [][] dct_dc = new double [dctdc_data.length][];
double [][] dct_ac = new double [dctdc_data.length][];
for (int chn = 0; chn < dct_dc.length; chn++) {
dct_dc[chn] = image_dtt.lapped_dct_dcac(
false, // out_ac, // false - output DC, true - output AC
dctdc_data [chn],
THREADS_MAX,
DEBUG_LEVEL);
dct_ac[chn] = image_dtt.lapped_dct_dcac(
true, // out_ac, // false - output DC, true - output AC
double [][] dct = new double [dctdc_data.length][];
for (int chn = 0; chn < dct.length; chn++) {
dct[chn] = image_dtt.lapped_dct_dbg(
dctdc_data [chn],
THREADS_MAX,
DEBUG_LEVEL);
}
// System.out.println("dct_dc.length="+dct_dc.length+" dct_ac.length="+dct_ac.length);
if (DEBUG_LEVEL > 0){
SDFA_INSTANCE.showArrays(dct_ac,
SDFA_INSTANCE.showArrays(dct,
tilesX*DCT_PARAMETERS.dct_size,
tilesY*DCT_PARAMETERS.dct_size,
true,
DBG_IMP.getTitle()+"-DCT_AC");
SDFA_INSTANCE.showArrays(dct_dc,
tilesX,
tilesY,
true,
DBG_IMP.getTitle()+"-DCT_DC");
DBG_IMP.getTitle()+"-DCT");
}
double [][] idct_data = new double [dctdc_data.length][];
for (int chn=0; chn<idct_data.length;chn++){
idct_data[chn] = image_dtt.lapped_idctdc(
idct_data[chn] = image_dtt.lapped_idct(
dctdc_data[chn], // scanline representation of dcd data, organized as dct_size x dct_size tiles
DCT_PARAMETERS.dct_size, // final int
DCT_PARAMETERS.dct_window, //window_type
......@@ -3503,14 +3430,15 @@ private Panel panel1,panel2,panel3,panel4,panel5,panel5a, panel6,panel7,panelPos
EYESIS_DCT.createDCTKernels(
DCT_PARAMETERS,
/*
EYESIS_CORRECTIONS.pixelMapping,
*/
CONVOLVE_FFT_SIZE/2,
THREADS_MAX,
UPDATE_STATUS, // update status info
DEBUG_LEVEL);
//"Reset DCT kernels"
} else if (label.equals("Reset DCT kernels")) {
if (EYESIS_DCT != null){
EYESIS_DCT.resetDCTKernels();
}
} else if (label.equals("Read DCT kernels")) {
if (!DCT_PARAMETERS.showDialog()) return;
if (EYESIS_DCT == null){
......
src/main/java/ImageDtt.java
View file @ db512370
This diff is collapsed.
src/main/java/PixelMapping.java
View file @ db512370
......@@ -151,23 +151,11 @@ public class PixelMapping {
return (this.sensors != null) && (channel>=0) && (channel<this.sensors.length) && (this.sensors[channel]!=null);
}
/*
public int [] channelsForSubCamera(int subCamera){
if (this.sensors == null) return null;
int numChannels=0;
for (int i=0;i<this.sensors.length;i++) if ((this.sensors[i]!=null) &&(this.sensors[i].subcamera==subCamera)) numChannels++;
int [] result=new int [numChannels];
numChannels=0;
for (int i=0;i<this.sensors.length;i++) if ((this.sensors[i]!=null) &&(this.sensors[i].subcamera==subCamera)) result[numChannels++]=i;
return result;
}
*/
// Updating for nc393. subCamera here is 0..9 for Eyesis4pi393 - 0-based index of the file, so it combines physical camera (separate IP)
// as stored in "subcamera" field of the calibration file and "sensor_port". sensor_port may start from non-0, so we need to count all combinations
//removeUnusedSensorData xshould be off!
public int [] channelsForSubCamera(int subCamera){
System.out.println("channelsForSubCamera("+subCamera+"),this.sensors.length="+this.sensors.length);
// ArrayList<ArrayList<ArrayList<Integer>>> camera_IPs = new ArrayList<ArrayList<ArrayList<Integer>>>();
ArrayList<Point> cam_port = new ArrayList<Point>();
for (int i=0;i<this.sensors.length;i++) if (this.sensors[i]!=null) {
......@@ -175,6 +163,7 @@ public class PixelMapping {
if (!cam_port.contains(cp)){
cam_port.add(cp);
}
System.out.println("this.sensors["+i+"]!=null, this.sensors[i].subcamera="+this.sensors[i].subcamera+", this.sensors[i].sensor_port="+this.sensors[i].sensor_port);
}
Point [] cam_port_arr = cam_port.toArray(new Point[0]);
Arrays.sort(cam_port_arr, new Comparator<Point>() {
......@@ -183,9 +172,7 @@ public class PixelMapping {
return (o1.x>o2.x)? 1:((o1.x < o2.x)?-1:(o1.y > o2.y)? 1:((o1.y < o2.y)?-1:0));
}
});
// for (int i=0; i<cam_port_arr.length;i++){
// System.out.println("----- physical camera #"+cam_port_arr[i].x+", sensor_port="+cam_port_arr[i].y);
// }
// debugging:
System.out.println("----- This filename subcamera "+subCamera+": physical camera "+cam_port_arr[subCamera].x+", sensor_port "+cam_port_arr[subCamera].y);
if (subCamera >= cam_port_arr.length) {
System.out.println("Error: Subcamera "+subCamera+" > that total namera of sensor ports in the system = "+cam_port_arr.length);
......
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