implemented affine export (d9770c1e) · Commits · Elphel / imagej-elphel

src/main/java/com/elphel/imagej/orthomosaic/ComboMatch.java

+76 −0

Original line number	Diff line number	Diff line
		@@ -53,6 +53,7 @@ public class ComboMatch {
		public static int gpu_max_width= 4096;
		public static int gpu_max_height= 4096;
		public static String [] FILES_LISTS_PATHS = {
		"/media/elphel/SSD3-4GB/lwir16-proc/ortho_videos/nov3_50-75-orange",
		"/media/elphel/SSD3-4GB/lwir16-proc/ortho_videos/nov3_50-75",
		"/media/elphel/SSD3-4GB/lwir16-proc/ortho_videos/maps_sep12-13_50-25-50-75-100m",
		"/media/elphel/SSD3-4GB/lwir16-proc/ortho_videos/maps_19_sep13_25-50-75-100m",
		@@ -193,6 +194,10 @@ public class ComboMatch {
		boolean update_lla = false; // re-read file metadata
		boolean update_kernel_patterns = false;
		boolean update_bl_bc = false;
		boolean export_affine = false; // export per-scene affines
		boolean export_affine2 = false; // export per-pair affines


		boolean fix_duplicates = false;
		String [] suffixes_bl_bc= {"","-BL","-BC"};
		boolean log_append = clt_parameters.imp.pwise_log_append;
		@@ -258,6 +263,10 @@ public class ComboMatch {
		suffixes_bl_bc,
		suffixes_bl_bc[suffix_bc_bl_indx],
		"Select interpolation mode of the source files: old bilinear (empty), bilinear (-BL), or bicubic (-BC)", 0);

		gd.addCheckbox ("Export scene affines", export_affine, "Export per-scene affines in text format for migration.");
		gd.addCheckbox ("Export pairs affines", export_affine2, "Export per-pair affines in text format for migration.");

		gd.addCheckbox ("Write log file", log_append, "Enable writing log file with matching results.");
		gd.addStringField ("Log file full path", log_path, 150, "Path of the log file to be appended.");
		// gd.addCheckbox ("Read no-alt data (old)", READ_NO_ALT, "Read older format data file where pairs do not have alt_data[].");
		@@ -272,6 +281,8 @@ public class ComboMatch {
		omtch_img_set = ComboMatch.FILES_LISTS_PATHS[gd.getNextChoiceIndex()];
		String files_list_path = omtch_img_set+".list";
		String orthoMapsCollection_path =omtch_img_set+".data";
		String affines_path = omtch_img_set+".affines"; // for export per-scene affines
		String affines2_path = omtch_img_set+".affines2"; // for export per-pair affines
		use_saved_collection = gd.getNextBoolean();
		save_collection = gd.getNextBoolean();
		String orthoMapsCollection_savepath = save_collection?orthoMapsCollection_path:null;
		@@ -309,6 +320,11 @@ public class ComboMatch {
		fix_duplicates= gd.getNextBoolean();
		update_bl_bc= gd.getNextBoolean();
		suffix_bc_bl_indx = gd.getNextChoiceIndex();

		export_affine = gd.getNextBoolean();
		export_affine2 = gd.getNextBoolean();


		log_append = gd.getNextBoolean();
		log_path = gd.getNextString();
		// READ_NO_ALT = gd.getNextBoolean();
		@@ -339,6 +355,64 @@ public class ComboMatch {
		maps_collection.updateNumberScenes();
		maps_collection.updateSfmGain();
		}

		if (export_affine) {
		StringBuffer sb = new StringBuffer();
		for (OrthoMap omap : maps_collection.ortho_maps) {
		String name = omap.getName();
		double [][] affine = omap.getAffine();
		if (affine != null) {
		sb.append(String.format("AFFINE %s %11.8f %11.8f %11.8f %11.8f %11.8f %11.8f\n",
		name, affine[0][0], affine[0][1], affine[0][2], affine[1][0], affine[1][1], affine[1][2]));
		}
		}
		CalibrationFileManagement.saveStringToFile (
		affines_path, //String path,
		sb.toString(), // data,
		false); // boolean append)
		}

		if (export_affine2) {
		StringBuffer sb = new StringBuffer();
		ArrayList<Point> pairs_list = new ArrayList<Point>();
		for (OrthoMap map : maps_collection.ortho_maps) {
		for (String other_name: map.pairwise_matches.keySet()) {
		pairs_list.add(new Point(
		maps_collection.getIndex(map.getName()),
		maps_collection.getIndex(other_name)));
		}
		}
		Collections.sort(pairs_list, new Comparator<Point>() {
		@Override
		public int compare(Point lhs, Point rhs) {
		return (rhs.x > lhs.x) ? -1 : (rhs.x < lhs.x) ? 1 :
		((rhs.y > lhs.y) ? -1 : (rhs.y < lhs.y) ? 1 : 0); // increasing
		}
		});
		for (Point pair: pairs_list) {
		PairwiseOrthoMatch pom = maps_collection.ortho_maps[pair.x].getMatch(
		maps_collection.ortho_maps[pair.y].getName(), false); // undef_only \|\| nan_rms);
		if ((pom !=null) && pom.isDefined()) {
		double overlap = pom.overlap;
		double [][] affine = pom.getAffine();
		sb.append(String.format("AFFINE2 %s %s %11.8f %11.8f %11.8f %11.8f %11.8f %11.8f %11.8f\n",
		maps_collection.ortho_maps[pair.x].getName(),
		maps_collection.ortho_maps[pair.y].getName(),
		overlap,
		affine[0][0], affine[0][1], affine[0][2], affine[1][0], affine[1][1], affine[1][2]));
		}
		}
		CalibrationFileManagement.saveStringToFile (
		affines2_path, //String path,
		sb.toString(), // data,
		false); // boolean append)
		}

		if (export_affine \|\| export_affine2) {
		return true; // do not save
		}


		if (fix_duplicates) {
		removeDuplicateScenes (maps_collection);
		}
		@@ -353,6 +427,8 @@ public class ComboMatch {
		}
		}



		String [] names = maps_collection.getNames(); // null
		if (object_list != null) {
		int corr_size = 128;

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