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Commit be7e6c62 authored by Andrey Filippov's avatar Andrey Filippov
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Added window functions, seem to stabilize LMA

parent 03feb56c
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Showing with 277 additions and 285 deletions
src/main/java/EyesisCorrectionParameters.java
View file @ be7e6c62
...@@ -1666,6 +1666,7 @@ public class EyesisCorrectionParameters { ...@@ -1666,6 +1666,7 @@ public class EyesisCorrectionParameters {
public double dbg_sigma =2.0; public double dbg_sigma =2.0;
public String dbg_mask = ".........:::::::::.........:::::::::......*..:::::*:::.........:::::::::........."; public String dbg_mask = ".........:::::::::.........:::::::::......*..:::::*:::.........:::::::::.........";
public int dbg_mode = 1; // 0 - old LMA, 1 - new LMA public int dbg_mode = 1; // 0 - old LMA, 1 - new LMA
public int dbg_window_mode = 2; // 0 - none, 1 - square, 2 - sin
public DCTParameters( public DCTParameters(
int dct_size, int dct_size,
...@@ -1705,6 +1706,7 @@ public class EyesisCorrectionParameters { ...@@ -1705,6 +1706,7 @@ public class EyesisCorrectionParameters {
properties.setProperty(prefix+"dbg_sigma", this.dbg_sigma+""); properties.setProperty(prefix+"dbg_sigma", this.dbg_sigma+"");
properties.setProperty(prefix+"dbg_mask", this.dbg_mask+""); properties.setProperty(prefix+"dbg_mask", this.dbg_mask+"");
properties.setProperty(prefix+"dbg_mode", this.dbg_mode+""); properties.setProperty(prefix+"dbg_mode", this.dbg_mode+"");
properties.setProperty(prefix+"dbg_window_mode", this.dbg_window_mode+"");
} }
public void getProperties(String prefix,Properties properties){ public void getProperties(String prefix,Properties properties){
...@@ -1726,6 +1728,7 @@ public class EyesisCorrectionParameters { ...@@ -1726,6 +1728,7 @@ public class EyesisCorrectionParameters {
if (properties.getProperty(prefix+"dbg_sigma")!=null) this.dbg_sigma=Double.parseDouble(properties.getProperty(prefix+"dbg_sigma")); if (properties.getProperty(prefix+"dbg_sigma")!=null) this.dbg_sigma=Double.parseDouble(properties.getProperty(prefix+"dbg_sigma"));
if (properties.getProperty(prefix+"dbg_mask")!=null) this.dbg_mask=properties.getProperty(prefix+"dbg_mask"); if (properties.getProperty(prefix+"dbg_mask")!=null) this.dbg_mask=properties.getProperty(prefix+"dbg_mask");
if (properties.getProperty(prefix+"dbg_mode")!=null) this.dbg_mode=Integer.parseInt(properties.getProperty(prefix+"dbg_mode")); if (properties.getProperty(prefix+"dbg_mode")!=null) this.dbg_mode=Integer.parseInt(properties.getProperty(prefix+"dbg_mode"));
if (properties.getProperty(prefix+"dbg_window_mode")!=null) this.dbg_window_mode=Integer.parseInt(properties.getProperty(prefix+"dbg_window_mode"));
} }
public boolean showDialog() { public boolean showDialog() {
GenericDialog gd = new GenericDialog("Set DCT parameters"); GenericDialog gd = new GenericDialog("Set DCT parameters");
...@@ -1747,6 +1750,7 @@ public class EyesisCorrectionParameters { ...@@ -1747,6 +1750,7 @@ public class EyesisCorrectionParameters {
gd.addNumericField("dbg_sigma", this.dbg_sigma, 3); //0..2 gd.addNumericField("dbg_sigma", this.dbg_sigma, 3); //0..2
gd.addStringField ("Debug mask (anything but * is false)", this.dbg_mask,100); gd.addStringField ("Debug mask (anything but * is false)", this.dbg_mask,100);
gd.addNumericField("LMA implementation: 0 - old, 1 - new", this.dbg_mode, 0); //32 gd.addNumericField("LMA implementation: 0 - old, 1 - new", this.dbg_mode, 0); //32
gd.addNumericField("Convolution window: 0 - none, 1 - square, 2 - sin, 3 - sin^2", this.dbg_window_mode, 0); //32
// gd.addNumericField("Debug Level:", MASTER_DEBUG_LEVEL, 0); // gd.addNumericField("Debug Level:", MASTER_DEBUG_LEVEL, 0);
gd.showDialog(); gd.showDialog();
...@@ -1769,6 +1773,7 @@ public class EyesisCorrectionParameters { ...@@ -1769,6 +1773,7 @@ public class EyesisCorrectionParameters {
this.dbg_sigma= gd.getNextNumber(); this.dbg_sigma= gd.getNextNumber();
this.dbg_mask= gd.getNextString(); this.dbg_mask= gd.getNextString();
this.dbg_mode= (int) gd.getNextNumber(); this.dbg_mode= (int) gd.getNextNumber();
this.dbg_window_mode= (int) gd.getNextNumber();
// MASTER_DEBUG_LEVEL= (int) gd.getNextNumber(); // MASTER_DEBUG_LEVEL= (int) gd.getNextNumber();
return true; return true;
......
src/main/java/Eyesis_Correction.java
View file @ be7e6c62
...@@ -2838,6 +2838,7 @@ private Panel panel1,panel2,panel3,panel4,panel5,panel5a, panel6,panel7,panelPos ...@@ -2838,6 +2838,7 @@ private Panel panel1,panel2,panel3,panel4,panel5,panel5a, panel6,panel7,panelPos
if (!DCT_PARAMETERS.showDialog()) return; if (!DCT_PARAMETERS.showDialog()) return;
FactorConvKernel factorConvKernel = new FactorConvKernel(DCT_PARAMETERS.dbg_mode == 1); FactorConvKernel factorConvKernel = new FactorConvKernel(DCT_PARAMETERS.dbg_mode == 1);
factorConvKernel.setDebugLevel(DEBUG_LEVEL); factorConvKernel.setDebugLevel(DEBUG_LEVEL);
factorConvKernel.setTargetWindowMode(DCT_PARAMETERS.dbg_window_mode);
factorConvKernel.numIterations = DCT_PARAMETERS.LMA_steps; factorConvKernel.numIterations = DCT_PARAMETERS.LMA_steps;
factorConvKernel.setAsymCompactness( factorConvKernel.setAsymCompactness(
DCT_PARAMETERS.compactness, DCT_PARAMETERS.compactness,
...@@ -2898,16 +2899,6 @@ private Panel panel1,panel2,panel3,panel4,panel5,panel5a, panel6,panel7,panelPos ...@@ -2898,16 +2899,6 @@ private Panel panel1,panel2,panel3,panel4,panel5,panel5a, panel6,panel7,panelPos
for (int ii = 0; ii<mask.length; ii++) { for (int ii = 0; ii<mask.length; ii++) {
mask[ii] = ((ii <= DCT_PARAMETERS.dbg_mask.length()) && (DCT_PARAMETERS.dbg_mask.charAt(ii) == '*')); mask[ii] = ((ii <= DCT_PARAMETERS.dbg_mask.length()) && (DCT_PARAMETERS.dbg_mask.charAt(ii) == '*'));
} }
/*
System.out.println("asym mask: ");
for (int ii=0;ii<DCT_PARAMETERS.asym_size;ii++){
System.out.print(ii+": ");
for (int jj=0;jj<DCT_PARAMETERS.asym_size;jj++){
System.out.print((mask[ii*DCT_PARAMETERS.asym_size+jj]?" X":" .")+" ");
}
System.out.println();
}
*/
} }
...@@ -2923,11 +2914,16 @@ private Panel panel1,panel2,panel3,panel4,panel5,panel5a, panel6,panel7,panelPos ...@@ -2923,11 +2914,16 @@ private Panel panel1,panel2,panel3,panel4,panel5,panel5a, panel6,panel7,panelPos
double [] sym_kernel = factorConvKernel.getSymKernel(); double [] sym_kernel = factorConvKernel.getSymKernel();
double [] asym_kernel = factorConvKernel.getAsymKernel(); double [] asym_kernel = factorConvKernel.getAsymKernel();
double [] convolved = factorConvKernel.getConvolved(); double [] convolved = factorConvKernel.getConvolved();
double [] diff100 = new double [convolved.length]; double [] target_weights = factorConvKernel.getTargetWeights();
for (int ii=0;ii<convolved.length;ii++) diff100[ii]=100.0*(target_expanded[ii]-convolved[ii]);
double [] diff100 = new double [convolved.length];
double [] weighted_diff100 = new double [convolved.length];
for (int ii=0;ii<convolved.length;ii++) {
diff100[ii]=100.0*(target_expanded[ii]-convolved[ii]);
weighted_diff100[ii] = diff100[ii]* target_weights[ii];
}
double [][] compare_kernels = {target_expanded, convolved, weighted_diff100,target_weights, diff100};
double [][] compare_kernels = {target_expanded, convolved, diff100};
System.out.println("DCT_PARAMETERS.dct_size="+DCT_PARAMETERS.dct_size+" DCT_PARAMETERS.asym_size="+DCT_PARAMETERS.asym_size); System.out.println("DCT_PARAMETERS.dct_size="+DCT_PARAMETERS.dct_size+" DCT_PARAMETERS.asym_size="+DCT_PARAMETERS.asym_size);
System.out.println("sym_kernel.length="+ sym_kernel.length); System.out.println("sym_kernel.length="+ sym_kernel.length);
System.out.println("asym_kernel.length="+asym_kernel.length); System.out.println("asym_kernel.length="+asym_kernel.length);
...@@ -2942,6 +2938,7 @@ private Panel panel1,panel2,panel3,panel4,panel5,panel5a, panel6,panel7,panelPos ...@@ -2942,6 +2938,7 @@ private Panel panel1,panel2,panel3,panel4,panel5,panel5a, panel6,panel7,panelPos
if (!DCT_PARAMETERS.showDialog()) return; if (!DCT_PARAMETERS.showDialog()) return;
FactorConvKernel factorConvKernel = new FactorConvKernel(DCT_PARAMETERS.dbg_mode == 1); FactorConvKernel factorConvKernel = new FactorConvKernel(DCT_PARAMETERS.dbg_mode == 1);
factorConvKernel.setDebugLevel(DEBUG_LEVEL); factorConvKernel.setDebugLevel(DEBUG_LEVEL);
factorConvKernel.setTargetWindowMode(DCT_PARAMETERS.dbg_window_mode);
factorConvKernel.numIterations = DCT_PARAMETERS.LMA_steps; factorConvKernel.numIterations = DCT_PARAMETERS.LMA_steps;
factorConvKernel.setAsymCompactness( factorConvKernel.setAsymCompactness(
DCT_PARAMETERS.compactness, DCT_PARAMETERS.compactness,
...@@ -3008,7 +3005,15 @@ private Panel panel1,panel2,panel3,panel4,panel5,panel5a, panel6,panel7,panelPos ...@@ -3008,7 +3005,15 @@ private Panel panel1,panel2,panel3,panel4,panel5,panel5a, panel6,panel7,panelPos
double [] sym_kernel = factorConvKernel.getSymKernel(); double [] sym_kernel = factorConvKernel.getSymKernel();
double [] asym_kernel = factorConvKernel.getAsymKernel(); double [] asym_kernel = factorConvKernel.getAsymKernel();
double [] convolved = factorConvKernel.getConvolved(); double [] convolved = factorConvKernel.getConvolved();
double [][] compare_kernels = {target_expanded, convolved}; double [] target_weights = factorConvKernel.getTargetWeights();
double [] diff100 = new double [convolved.length];
double [] weighted_diff100 = new double [convolved.length];
for (int ii=0;ii<convolved.length;ii++) {
diff100[ii]=100.0*(target_expanded[ii]-convolved[ii]);
weighted_diff100[ii] = diff100[ii]* target_weights[ii];
}
double [][] compare_kernels = {target_expanded, convolved, weighted_diff100,target_weights, diff100};
System.out.println("DCT_PARAMETERS.dct_size="+DCT_PARAMETERS.dct_size+" DCT_PARAMETERS.asym_size="+DCT_PARAMETERS.asym_size); System.out.println("DCT_PARAMETERS.dct_size="+DCT_PARAMETERS.dct_size+" DCT_PARAMETERS.asym_size="+DCT_PARAMETERS.asym_size);
System.out.println("sym_kernel.length="+ sym_kernel.length); System.out.println("sym_kernel.length="+ sym_kernel.length);
System.out.println("asym_kernel.length="+asym_kernel.length); System.out.println("asym_kernel.length="+asym_kernel.length);
......
src/main/java/FactorConvKernel.java
View file @ be7e6c62
...@@ -55,7 +55,7 @@ public class FactorConvKernel { ...@@ -55,7 +55,7 @@ public class FactorConvKernel {
public int asym_pixels = 10; // maximal number of non-zero pixels in asymmmetrical kernel public int asym_pixels = 10; // maximal number of non-zero pixels in asymmmetrical kernel
public int asym_distance = 2; // how far to seed a new pixel public int asym_distance = 2; // how far to seed a new pixel
public double compactness_weight = 1.0; // realtive "importance of asymmetrical kernel being compact" public double compactness_weight = 1.0; // relative "importance of asymmetrical kernel being compact"
public int asym_tax_free = 1; // do not apply compactness_weight for pixels close to the center public int asym_tax_free = 1; // do not apply compactness_weight for pixels close to the center
...@@ -98,6 +98,7 @@ public class FactorConvKernel { ...@@ -98,6 +98,7 @@ public class FactorConvKernel {
public double goal_rms_pure; public double goal_rms_pure;
public LMAData lMAData = null; public LMAData lMAData = null;
public int numLMARuns = 0; public int numLMARuns = 0;
public int target_window_mode = 2; // 0 - none, 1 - square, 2 - sin
public class LMAArrays { public class LMAArrays {
public double [][] jTByJ= null; // jacobian multiplied by Jacobian transposed public double [][] jTByJ= null; // jacobian multiplied by Jacobian transposed
...@@ -118,30 +119,38 @@ public class FactorConvKernel { ...@@ -118,30 +119,38 @@ public class FactorConvKernel {
private boolean [][] kernel_masks = {null,null}; private boolean [][] kernel_masks = {null,null};
private int [][] map_from_pars = null; // first index - number in (compressed) parameter vector, value - a pair of {kernel_type, index} private int [][] map_from_pars = null; // first index - number in (compressed) parameter vector, value - a pair of {kernel_type, index}
private int [][] map_to_pars = null; // first index - kernel type, second - index in kernel, value index in parameter vector private int [][] map_to_pars = null; // first index - kernel type, second - index in kernel, value index in parameter vector
public double [] fX = null; public double [] fX = null; // make always fixed length (convolution plus asym), get rid of map_*_fX
public double [] weight = null; // same length as fX - combineds weights (used while calculating JTByJ, JTByDiff, DiffByDiff
// when calculating weight2 - use kernel_masks[1] (zero if false), weights[1] contains full
// normalized so that sum == 1.0
public double [][] weights = {null, null}; // same length as fX [0] - weighs for the convolution array, [1] - for asym_kernel
/*?*/ public double weight_pure = 0.0; // 0.. 1.0 - fraction of weights for the convolution part
public double [] saved_fX = null; public double [] saved_fX = null;
public double [][] jacobian = null; public double [][] jacobian = null;
private double [] target_kernel = null; private double [] target_kernel = null;
private boolean [] fx_mask = null; private boolean [] fx_mask = null;
private double [] asym_weights = null; // multiply by asym_kernel elements to enforce compactness (proportional to r2 from the center) // private double [] asym_weights = null; // multiply by asym_kernel elements to enforce compactness (proportional to r2 from the center)
private int [][] map_from_fx = null; // first index - element in fX vector, second [0] - where to look (0 - target, 1 - asym), // private int [][] map_from_fx = null; // first index - element in fX vector, second [0] - where to look (0 - target, 1 - asym),
// second - index in target kernel or asym_kernel (kernels[1]) // second - index in target kernel or asym_kernel (kernels[1])
private int [][] map_to_fx = null; // private int [][] map_to_fx = null;
private int num_pure_points = 0;
private double [] par_vector = null; private double [] par_vector = null;
private LMAArrays lMAArrays = null; private LMAArrays lMAArrays = null;
public int debugLevel = 1; public int debugLevel = 1;
public double [] rmses = {-1.0, -1.0}; // [0] - composite, [1] - "pure" (without extra "punishment") public double [] rmses = {-1.0, -1.0}; // [0] - composite, [1] - "pure" (without extra "punishment")
public double [] saved_rmses = null; public double [] saved_rmses = null;
public double [] first_rmses = null; public double [] first_rmses = null;
public int target_window_mode = 2; // 0 - none, 1 - square, 2 - sin
public LMAData(){ public LMAData(){
} }
public LMAData( int debugLevel){ public LMAData( int debugLevel){
this.debugLevel = debugLevel; this.debugLevel = debugLevel;
} }
public void setTargetWindowMode(int mode){
target_window_mode = mode;
}
public void initLMAData(){ public void initLMAData(){
} }
...@@ -151,11 +160,11 @@ public class FactorConvKernel { ...@@ -151,11 +160,11 @@ public class FactorConvKernel {
public void invalidate_maps_pars(){ public void invalidate_maps_pars(){
map_from_pars = null; // will need to be re-generated map_from_pars = null; // will need to be re-generated
map_to_pars = null; map_to_pars = null;
// invalidate_maps_fx(); // asym_kernel parameters appear in map_*_fx too // nvalidate_weight(); // not needed - should be done for asym only
} }
public void invalidate_maps_fx(){
map_from_fx = null; // will need to be re-generated public void invalidate_weight(){
map_to_fx = null; // will need to be re-generated weight = null;
} }
public void setSymKernel (double [] sym_kernel){ // does not set mask! Use ( , null) to set default one public void setSymKernel (double [] sym_kernel){ // does not set mask! Use ( , null) to set default one
...@@ -171,7 +180,7 @@ public class FactorConvKernel { ...@@ -171,7 +180,7 @@ public class FactorConvKernel {
kernel_masks[0][0] = false; // do not adjust center element kernel_masks[0][0] = false; // do not adjust center element
for (int i=1;i< kernel_masks[0].length;i++) kernel_masks[0][i] = hasNaN? (!Double.isNaN(kernels[0][i])): true; for (int i=1;i< kernel_masks[0].length;i++) kernel_masks[0][i] = hasNaN? (!Double.isNaN(kernels[0][i])): true;
invalidate_maps_pars(); invalidate_maps_pars();
invalidate_maps_fx(); invalidate_weight();
} }
if (hasNaN){ if (hasNaN){
for (int i=0; i< kernels[0].length; i++) if (Double.isNaN(kernels[0][i])) kernels[0][i] = 0.0; for (int i=0; i< kernels[0].length; i++) if (Double.isNaN(kernels[0][i])) kernels[0][i] = 0.0;
...@@ -196,7 +205,7 @@ public class FactorConvKernel { ...@@ -196,7 +205,7 @@ public class FactorConvKernel {
if (mask != null) { if (mask != null) {
kernel_masks[0] = mask.clone(); kernel_masks[0] = mask.clone();
invalidate_maps_pars(); invalidate_maps_pars();
invalidate_maps_fx(); invalidate_weight();
} }
} }
...@@ -221,7 +230,7 @@ public class FactorConvKernel { ...@@ -221,7 +230,7 @@ public class FactorConvKernel {
public void setAsymKernel (double [] asym_kernel){ // does not set mask! Use ( , null) to set default one public void setAsymKernel (double [] asym_kernel){ // does not set mask! Use ( , null) to set default one
kernels[1] = asym_kernel.clone(); kernels[1] = asym_kernel.clone();
asym_size = (int) Math.round(Math.sqrt(asym_kernel.length)); asym_size = (int) Math.round(Math.sqrt(asym_kernel.length));
if (debugLevel > 2){ if (debugLevel > 3){
System.out.println("setAsymKernel(): kernel_masks[1] is "+((kernel_masks[1]==null)?"":"not ")+"null"); System.out.println("setAsymKernel(): kernel_masks[1] is "+((kernel_masks[1]==null)?"":"not ")+"null");
if (kernel_masks[1]!=null) System.out.println("kernel_masks[1].length= "+kernel_masks[1].length); if (kernel_masks[1]!=null) System.out.println("kernel_masks[1].length= "+kernel_masks[1].length);
} }
...@@ -234,16 +243,16 @@ public class FactorConvKernel { ...@@ -234,16 +243,16 @@ public class FactorConvKernel {
kernel_masks[1] = new boolean [kernels[1].length]; kernel_masks[1] = new boolean [kernels[1].length];
for (int i=0;i< kernel_masks[1].length;i++) kernel_masks[1][i] = hasNaN? (!Double.isNaN(kernels[1][i])): true; for (int i=0;i< kernel_masks[1].length;i++) kernel_masks[1][i] = hasNaN? (!Double.isNaN(kernels[1][i])): true;
invalidate_maps_pars(); invalidate_maps_pars();
invalidate_maps_fx(); invalidate_weight();
} }
if (hasNaN){ if (hasNaN){
for (int i=0; i< kernels[1].length; i++) if (Double.isNaN(kernels[1][i])) kernels[1][i] = 0.0; for (int i=0; i< kernels[1].length; i++) if (Double.isNaN(kernels[1][i])) kernels[1][i] = 0.0;
} }
if ((asym_weights == null) || (asym_weights.length != kernels[1].length)){ if ((weights[1] == null) || (weights[1].length != kernels[1].length)){
asym_weights = new double[kernels[1].length]; weights[1] = new double[kernels[1].length];
for (int i=0; i<asym_weights.length; i++){ for (int i=0; i<weights[1].length; i++){
asym_weights[i] = 0.0; // disable weights[1][i] = 0.0; // disable
} }
} }
...@@ -256,7 +265,7 @@ public class FactorConvKernel { ...@@ -256,7 +265,7 @@ public class FactorConvKernel {
if (asym_kernel !=null) setAsymKernel(asym_kernel); if (asym_kernel !=null) setAsymKernel(asym_kernel);
if (mask != null){ if (mask != null){
kernel_masks[1] = mask.clone(); kernel_masks[1] = mask.clone();
invalidate_maps_fx(); invalidate_weight();
} }
invalidate_maps_pars(); invalidate_maps_pars();
} }
...@@ -268,8 +277,8 @@ public class FactorConvKernel { ...@@ -268,8 +277,8 @@ public class FactorConvKernel {
} }
kernel_masks[1] = mask.clone(); kernel_masks[1] = mask.clone();
invalidate_maps_pars(); invalidate_maps_pars();
invalidate_maps_fx(); invalidate_weight();
if (debugLevel>1) System.out.println("updateAsymKernelMask(): invalidated map_from_pars and map_to_pars"); if (debugLevel > 2) System.out.println("updateAsymKernelMask(): invalidated map_from_pars and map_to_pars");
} }
public double[] getAsymKernel(double scale){ public double[] getAsymKernel(double scale){
...@@ -288,7 +297,7 @@ public class FactorConvKernel { ...@@ -288,7 +297,7 @@ public class FactorConvKernel {
this.target_kernel = target_kernel.clone(); this.target_kernel = target_kernel.clone();
fx_mask = new boolean[this.target_kernel.length]; fx_mask = new boolean[this.target_kernel.length];
for (int i= 0;i< fx_mask.length;i++) fx_mask[i] = true; for (int i= 0;i< fx_mask.length;i++) fx_mask[i] = true;
invalidate_maps_fx(); invalidate_weight();
} }
public double [] getTarget(){ public double [] getTarget(){
...@@ -297,13 +306,21 @@ public class FactorConvKernel { ...@@ -297,13 +306,21 @@ public class FactorConvKernel {
public void setTargetMask(boolean [] mask){ public void setTargetMask(boolean [] mask){
fx_mask=mask.clone(); fx_mask=mask.clone();
invalidate_maps_fx(); invalidate_weight();
} }
public boolean[] getTargetMask(){ public boolean[] getTargetMask(){
return fx_mask; return fx_mask;
} }
public void setAsymWeights(double [] weights){ public void setAsymWeights(double [] weights){
this.asym_weights = weights.clone(); // should have the same dimensions this.weights[1] = weights.clone(); // should have the same dimensions
}
public void setTargetWeights(double [] weights){
this.weights[0] = weights.clone(); // should have the same dimensions
}
public double[] getTargetWeights(){
if (this.weights[0] == null) getWeight(false); // generate
return this.weights[0];
} }
public void rebuildMapsPars(boolean force) public void rebuildMapsPars(boolean force)
...@@ -329,7 +346,7 @@ public class FactorConvKernel { ...@@ -329,7 +346,7 @@ public class FactorConvKernel {
} }
} }
if (debugLevel > 3){ if (debugLevel > 4){
System.out.println("rebuildMapsPars("+force+"), map_from_pars"); System.out.println("rebuildMapsPars("+force+"), map_from_pars");
for (int i = 0; i< map_from_pars.length; i++){ for (int i = 0; i< map_from_pars.length; i++){
System.out.println(i+": ("+map_from_pars[i][0]+","+map_from_pars[i][1]+")"); System.out.println(i+": ("+map_from_pars[i][0]+","+map_from_pars[i][1]+")");
...@@ -352,7 +369,7 @@ public class FactorConvKernel { ...@@ -352,7 +369,7 @@ public class FactorConvKernel {
} }
} }
if (debugLevel > 3){ if (debugLevel > 4){
System.out.println("rebuildMapsPars("+force+"), map_to_pars"); System.out.println("rebuildMapsPars("+force+"), map_to_pars");
for (int n = 0; n < map_to_pars.length; n++){ for (int n = 0; n < map_to_pars.length; n++){
for (int i = 0; i < map_to_pars[n].length; i++ ){ for (int i = 0; i < map_to_pars[n].length; i++ ){
...@@ -364,100 +381,60 @@ public class FactorConvKernel { ...@@ -364,100 +381,60 @@ public class FactorConvKernel {
} }
} }
public void rebuildMapsFx(boolean force)
{
if (force || (map_from_fx == null)){
if (debugLevel > 3){
System.out.println("rebuildMapsFx(), delete jacobian");
}
rebuildMapsPars(false);
fX = null; // invalidate
jacobian = null;
int numPoints=0;
num_pure_points = 0;
boolean [][]fx_masks = {fx_mask, kernel_masks[1]};
for (int n = 0; n < fx_masks.length; n++){
for (int i = 0; i<fx_masks[n].length; i++){ // will throw if masks are not initialized
if (fx_masks[n][i]) {
numPoints++;
if (n==0) num_pure_points++;
}
}
}
map_from_fx = new int [numPoints][2];
int indx = 0;
for (int n = 0; n < fx_masks.length; n++){
for (int i = 0; i<fx_masks[n].length; i++){
if (fx_masks[n][i]){
map_from_fx[indx ][0] = n;
map_from_fx[indx++][1] = i;
}
}
}
if (debugLevel > 3){
System.out.println("rebuildMapsFx("+force+"), map_from_fx.length="+map_from_fx.length);
System.out.println("fx_masks[0].length="+fx_masks[0].length);
System.out.println("fx_masks[1].length="+fx_masks[1].length);
for (int n = 0; n < fx_masks.length; n++){
System.out.println("fx_masks["+n+"].length="+fx_masks[n].length);
for (int i = 0; i<fx_masks[n].length; i++){ // will throw if masks are not initialized
System.out.print(fx_masks[n][i]?"X":".");
}
System.out.println();
}
for (int n = 0; n < kernel_masks.length; n++){
System.out.println("kernel_masks["+n+"].length="+kernel_masks[n].length);
for (int i = 0; i<kernel_masks[n].length; i++){ // will throw if masks are not initialized
System.out.print(kernel_masks[n][i]?"X":".");
}
System.out.println();
}
System.out.println("rebuildMapsFx("+force+"), map_from_fx numPoints = "+numPoints+" num_pure_points="+num_pure_points);
for (int i = 0; i< map_from_fx.length; i++){
System.out.println(i+": ("+map_from_fx[i][0]+","+map_from_fx[i][1]+")");
public double [] getWeight(boolean force)
{
if (force || (weight == null)){
if (debugLevel > 4){
System.out.println("getWeight(), delete jacobian");
} }
if ((weights[0] == null) || (weights[0].length != target_kernel.length)){
if (debugLevel > 2){
System.out.println("Convolution weight is null/outdated, regenerating default (only center part)");
} }
double [] sins = new double [2*sym_radius-1];
for (int i = 1; i< 2*sym_radius; i++) sins[i-1] = Math.sin(Math.PI*i/(2.0 * sym_radius));
weights[0] = new double [target_kernel.length];
int conv_size = asym_size + 2*sym_radius-2;
int left_top_margin = ((asym_size-1)/2); // inclusive
int right_bottom_margin = left_top_margin + (2 * sym_radius - 1); // exclusive
for (int i = 0; i < conv_size; i++) {
for (int j = 0; j < conv_size; j++){
int cindx = i * conv_size + j;
if ((i >= left_top_margin) && (i < right_bottom_margin) && (j >= left_top_margin) && (j < right_bottom_margin)) {
weights[0][cindx] = (target_window_mode>=2)?(sins[i-left_top_margin]*sins[j-left_top_margin]):1.0;
if (target_window_mode == 3) {
weights[0][cindx]*=weights[0][cindx];
} }
if (force || (map_to_fx == null)){
boolean [][]fx_masks = {fx_mask, kernel_masks[1]};
map_to_fx = new int [fx_masks.length][];
int numPar = 0;
for (int n = 0; n < map_to_fx.length; n++){
map_to_fx[n] = new int [fx_masks[n].length];
for (int i = 0; i < map_to_fx[n].length; i++ ){
if (fx_masks[n][i]){
map_to_fx[n][i] = numPar++;
} else { } else {
map_to_fx[n][i] = -1; weights[0][cindx] = (target_window_mode == 0)? 1.0: 0.0;
}
}
} }
if (debugLevel > 3){
System.out.println("rebuildMapsFx("+force+"), map_to_fx");
for (int n = 0; n < map_to_fx.length; n++){
for (int i = 0; i < map_to_fx[n].length; i++ ){
System.out.println(n+","+i+": "+map_to_fx[n][i]);
} }
} }
} }
//target_window_mode
rebuildMapsPars(false); // only if it does not exist
double sw = 0.0;
for (int i=0; i< weights[0].length; i++) sw+= weights[0][i];
weight_pure = sw;
for (int i=0; i< weights[1].length; i++) sw+= weights[1][i];
weight_pure /= sw;
this.weight = new double[weights[0].length+weights[1].length];
for (int i=0; i< weights[0].length; i++) weight[i] = weights[0][i]/sw;
for (int i=0; i< weights[1].length; i++) weight[i + weights[0].length] = weights[1][i]/sw;
fX = null; // invalidate
jacobian = null;
} }
return this.weight;
} }
// just for debugging // just for debugging
public int [][] getMapToFx() { return map_to_fx; }
public int [][] getMapFromFx() { return map_from_fx; }
public int [][] getMapToPars() { return map_to_pars; } public int [][] getMapToPars() { return map_to_pars; }
public int [][] getMapFromPars() { return map_from_pars;} public int [][] getMapFromPars() { return map_from_pars;}
public int getNumPars() {return map_from_pars.length;} public int getNumPars() { return map_from_pars.length;}
public int getNumPoints() {return map_from_fx.length;} public int getNumPoints() { return weights[0].length+weights[1].length;}
public int getNumPurePoints() {return num_pure_points;} public int getNumPurePoints() { return weights[0].length;}
public double [] getVector(){ public double [] getVector(){
...@@ -484,42 +461,33 @@ public class FactorConvKernel { ...@@ -484,42 +461,33 @@ public class FactorConvKernel {
public double [] getFX(boolean skip_disabled_asym, boolean justConvolved) // consider all masked out asym_kernel elements to be 0 public double [] getFX(boolean skip_disabled_asym, boolean justConvolved) // consider all masked out asym_kernel elements to be 0
{ {
rebuildMapsFx(false); // will invalidate (make null) fX if data is not current, otherwise just return last calculated value. getWeight(false); // will invalidate (make null) fX if data is not current, otherwise just return last calculated value.
if ((fX == null) || justConvolved) { if ((fX == null) || justConvolved) {
int conv_size = asym_size + 2*sym_radius-2; int conv_size = asym_size + 2*sym_radius-2;
int conv_len = conv_size * conv_size;
int sym_rad_m1 = sym_radius - 1; // 7 int sym_rad_m1 = sym_radius - 1; // 7
double [] fX = new double [justConvolved? (conv_size*conv_size): map_from_fx.length]; double [] fX = new double [justConvolved? conv_len: this.weight.length];
// calculate convolution, for kernels - regardless of kernels enabled/disabled // calculate convolution, for kernels - regardless of kernels enabled/disabled
// calculate convolution part // calculate convolution part
for (int ci =0; ci < conv_size; ci++) for (int cj =0; cj < conv_size; cj++){ for (int ci =0; ci < conv_size; ci++) for (int cj =0; cj < conv_size; cj++){
int cindx = ci*conv_size + cj; int cindx = ci*conv_size + cj;
int fx_indx = justConvolved? cindx: map_to_fx[0][cindx]; // from index in the convolved space to fX vector // if (!justConvolved && (this.weight[cindx] == 0.0)){
// if (fx_indx==167) System.out.println("-fx_indx = "+fx_indx+" ci="+ci+" cj="+cj+" cindx="+cindx); if (this.weight[cindx] == 0.0){
if (fx_indx >=0){ // calculate convolution for ci, cj fX[cindx] = 0.0;
fX[fx_indx] = 0; } else { // calculate convolution for ci, cj
fX[cindx] = 0;
for (int ai = 0; ai < asym_size; ai ++){ for (int ai = 0; ai < asym_size; ai ++){
int si = (ci - ai) - sym_rad_m1; int si = (ci - ai) - sym_rad_m1;
if (si < 0) si = -si; if (si < 0) si = -si;
if (si < sym_radius) { if (si < sym_radius) {
// if (fx_indx==167) System.out.println("--fx_indx = "+fx_indx+" si="+si+" ai="+ai+" ci="+ci+" cj="+cj+" sym_rad_m1="+sym_rad_m1);
for (int aj = 0; aj < asym_size; aj ++){ for (int aj = 0; aj < asym_size; aj ++){
int aindx = ai*asym_size + aj; int aindx = ai*asym_size + aj;
// if (fx_indx==167) System.out.println("---fx_indx = "+fx_indx+" aindx="+aindx+" si="+si+
// " ai="+ai+" aj="+aj+" ci="+ci+" cj="+cj+" sym_rad_m1="+sym_rad_m1);
if (!skip_disabled_asym || kernel_masks[1][aindx]){ if (!skip_disabled_asym || kernel_masks[1][aindx]){
int sj = (cj - aj) - sym_rad_m1; int sj = (cj - aj) - sym_rad_m1;
if (sj < 0) sj = -sj; if (sj < 0) sj = -sj;
if (sj < sym_radius) { if (sj < sym_radius) {
int sindx = si * sym_radius + sj; int sindx = si * sym_radius + sj;
//fx_indx = 0 sindx=91 aindx=32 si=10 sj=11 ai=3 aj=5 ci=0 cj=1 sym_rad_m1=7 fX[cindx] += kernels[0][sindx] * kernels[1][aindx];
fX[fx_indx] += kernels[0][sindx] * kernels[1][aindx];
// if (fx_indx==167) {
// System.out.println("fx_indx = "+fx_indx+" sindx="+sindx+" aindx="+aindx+" si="+si+" sj="+sj+
// " ai="+ai+" aj="+aj+" ci="+ci+" cj="+cj+" sym_rad_m1="+sym_rad_m1);
// System.out.println("fX["+fx_indx+"] += kernels[0]["+sindx+"] * kernels[1]["+aindx+"] +="+
// kernels[0][sindx]+"*"+ kernels[1][aindx]+" +="+kernels[0][sindx] * kernels[1][aindx]+" = "+fX[fx_indx]);
// }
} }
} }
} }
...@@ -528,24 +496,25 @@ public class FactorConvKernel { ...@@ -528,24 +496,25 @@ public class FactorConvKernel {
} }
} }
if (justConvolved) { if (justConvolved) {
return fX; // do not coy to this.fX return fX; // do not copy to this.fX
} }
// calculate asym kernel elements "handicaps" // calculate asym kernel elements "handicaps"
if (!justConvolved) { if (!justConvolved) {
for (int ai = 0; ai < asym_size; ai ++){ for (int ai = 0; ai < asym_size; ai ++){
for (int aj = 0; aj < asym_size; aj ++){ for (int aj = 0; aj < asym_size; aj ++){
int aindx = ai*asym_size + aj; int aindx = ai*asym_size + aj;
int fx_indx = map_to_fx[1][aindx]; // from index in the asym_kernel to fX vector int fx_indx = conv_len + aindx; // from index in the asym_kernel to fX vector
if (fx_indx>=0) { if ((this.weight[fx_indx] != 0.0)) {
fX[fx_indx] += kernels[1][aindx] * asym_weights[aindx]; fX[fx_indx] += kernels[1][aindx];
} }
} }
} }
} }
this.fX = fX; this.fX = fX;
double [] diffs = getDiffByDiff(); double [] diffs = getDiffByDiffW();
rmses[0] = Math.sqrt(diffs[0] / getNumPoints()); this.rmses = new double[2];
rmses[1] = Math.sqrt(diffs[1] / getNumPurePoints()); this.rmses[0] = Math.sqrt(diffs[0]);
this.rmses[1] = Math.sqrt(diffs[1]/this.weight_pure);
if (first_rmses == null) first_rmses = rmses.clone(); if (first_rmses == null) first_rmses = rmses.clone();
} }
return fX; return fX;
...@@ -553,58 +522,36 @@ public class FactorConvKernel { ...@@ -553,58 +522,36 @@ public class FactorConvKernel {
public double [][] getJacobian(boolean recalculate, boolean skip_disabled_asym) public double [][] getJacobian(boolean recalculate, boolean skip_disabled_asym)
{ {
// System.out.println("getJacobian("+recalculate+","+skip_disabled_asym+")"); getWeight(false); // will invalidate (make null) fX and jacobian if data is not current
rebuildMapsFx(false); // will invalidate (make null) fX and jacobian if data is not current
if (recalculate || (jacobian == null)){ if (recalculate || (jacobian == null)){
jacobian = new double [map_from_pars.length][map_from_fx.length]; jacobian = new double [map_from_pars.length][this.weight.length];
// zero elements? // zero elements?
// calculate convolution parts, for kernels - regardless of kernels enabled/disabled // calculate convolution parts, for kernels - regardless of kernels enabled/disabled
int conv_size = asym_size + 2*sym_radius-2; int conv_size = asym_size + 2*sym_radius-2;
int conv_len = conv_size * conv_size;
int sym_rad_m1 = sym_radius - 1; // 7 int sym_rad_m1 = sym_radius - 1; // 7
// calculate convolution part // calculate convolution part
for (int ci =0; ci < conv_size; ci++) for (int cj =0; cj < conv_size; cj++){ for (int ci =0; ci < conv_size; ci++) for (int cj =0; cj < conv_size; cj++){
int cindx = ci*conv_size + cj; int cindx = ci*conv_size + cj;
int fx_indx = map_to_fx[0][cindx]; // from index in the convolved space to fX vector
// if ((ci ==7) && (cj ==6)){ if (this.weight[cindx] != 0.0){ // calculate convolution for ci, cj (skip masked out for speed)
// System.out.println("-fx_indx = "+fx_indx+" ci="+ci+" cj="+cj);
// }
if (fx_indx >=0){ // calculate convolution for ci, cj
for (int ai = 0; ai < asym_size; ai ++){ for (int ai = 0; ai < asym_size; ai ++){
int si = (ci - ai) - sym_rad_m1; int si = (ci - ai) - sym_rad_m1;
if (si < 0) si = -si; if (si < 0) si = -si;
// if ((ci ==7) && (cj ==6)){
// System.out.println("--fx_indx = "+fx_indx+" si="+si+" ai="+ai+" ci="+ci+" cj="+cj);
// }
if (si < sym_radius) { if (si < sym_radius) {
for (int aj = 0; aj < asym_size; aj ++){ for (int aj = 0; aj < asym_size; aj ++){
int aindx = ai*asym_size + aj; int aindx = ai*asym_size + aj;
int apar_indx = map_to_pars[1][aindx]; int apar_indx = map_to_pars[1][aindx];
int sj = (cj - aj) - sym_rad_m1; int sj = (cj - aj) - sym_rad_m1;
if (sj < 0) sj = -sj; if (sj < 0) sj = -sj;
// if ((ci ==7) && (cj ==6)){
// System.out.println("---fx_indx = "+fx_indx+" aindx="+aindx+" si="+si+" sj="+sj+" ai="+ai+" aj="+aj+" ci="+ci+" cj="+cj);
// }
if (sj < sym_radius) { if (sj < sym_radius) {
int sindx = si * sym_radius + sj; int sindx = si * sym_radius + sj;
// d/d(asym_kernel)
if (apar_indx >= 0){ if (apar_indx >= 0){
jacobian[apar_indx][fx_indx] += kernels[0][sindx]; jacobian[apar_indx][cindx] += kernels[0][sindx];
// if ((ci ==7) && (cj ==6)){
// System.out.println("0: jacobian["+apar_indx+"]["+fx_indx+"] += kernels[0]["+sindx+"]+="+kernels[0][sindx]+" ="+jacobian[apar_indx][fx_indx]);
// }
} }
// d/d(sym_kernel)
int spar_indx = map_to_pars[0][sindx]; int spar_indx = map_to_pars[0][sindx];
// if ((ci ==7) && (cj ==6)){
// System.out.println("----fx_indx = "+fx_indx+" sindx="+sindx+" aindx="+aindx+" si="+si+" sj="+sj+
// " ai="+ai+" aj="+aj+" ci="+ci+" cj="+cj+" spar_indx="+spar_indx);
// }
if ((spar_indx>=0) && (!skip_disabled_asym || kernel_masks[1][aindx])){ if ((spar_indx>=0) && (!skip_disabled_asym || kernel_masks[1][aindx])){
jacobian[spar_indx][fx_indx] += kernels[1][aindx]; jacobian[spar_indx][cindx] += kernels[1][aindx];
// if ((ci ==7) && (cj ==6)){
// System.out.println("1:jacobian["+spar_indx+"]["+fx_indx+"] += kernels[1]["+aindx+"] +="+kernels[1][aindx]+" ="+jacobian[spar_indx][fx_indx]);
// }
} }
} }
} }
...@@ -616,10 +563,9 @@ public class FactorConvKernel { ...@@ -616,10 +563,9 @@ public class FactorConvKernel {
for (int ai = 0; ai < asym_size; ai ++){ for (int ai = 0; ai < asym_size; ai ++){
for (int aj = 0; aj < asym_size; aj ++){ for (int aj = 0; aj < asym_size; aj ++){
int aindx = ai*asym_size + aj; int aindx = ai*asym_size + aj;
int fx_indx = map_to_fx[1][aindx]; // from index in the asym_kernel to fX vector
int par_indx = map_to_pars[1][aindx]; int par_indx = map_to_pars[1][aindx];
if (fx_indx>=0) { if (par_indx >=0) {
jacobian[par_indx][fx_indx] = asym_weights[aindx]; jacobian[par_indx][conv_len + aindx] = 1.0; // asym_weights[aindx];
} }
} }
} }
...@@ -676,10 +622,10 @@ public class FactorConvKernel { ...@@ -676,10 +622,10 @@ public class FactorConvKernel {
} }
public double [][] getJTByJ(){ public double [][] getJTByJW(){
return getJTByJ(true); return getJTByJW(true);
} }
public double [][] getJTByJ(boolean recalculate){ public double [][] getJTByJW(boolean recalculate){
if (recalculate) { if (recalculate) {
if (lMAArrays==null) lMAArrays = new LMAArrays(); if (lMAArrays==null) lMAArrays = new LMAArrays();
lMAArrays.jTByJ = new double [jacobian.length][jacobian.length]; lMAArrays.jTByJ = new double [jacobian.length][jacobian.length];
...@@ -690,7 +636,7 @@ public class FactorConvKernel { ...@@ -690,7 +636,7 @@ public class FactorConvKernel {
} else { } else {
lMAArrays.jTByJ[i][j] = 0; lMAArrays.jTByJ[i][j] = 0;
for (int k=0; k< jacobian[i].length; k++){ for (int k=0; k< jacobian[i].length; k++){
lMAArrays.jTByJ[i][j] += jacobian[i][k] * jacobian[j][k]; lMAArrays.jTByJ[i][j] += jacobian[i][k] * jacobian[j][k]*weight[k];
} }
} }
} }
...@@ -700,23 +646,26 @@ public class FactorConvKernel { ...@@ -700,23 +646,26 @@ public class FactorConvKernel {
} }
//getFX should be ran //getFX should be ran
public double [] getJTByDiff() public double [] getJTByDiffW()
{ {
return getJTByDiff(true); return getJTByDiffW(true);
} }
public double [] getJTByDiff(boolean recalculate) // current convolution result of async_kernel (*) sync_kernel, extended by asym_kernel components public double [] getJTByDiffW(boolean recalculate) // current convolution result of async_kernel (*) sync_kernel, extended by asym_kernel components
{ {
if (recalculate) { if (recalculate) {
int conv_size = asym_size + 2*sym_radius-2;
int conv_len = conv_size * conv_size;
if (lMAArrays==null) lMAArrays = new LMAArrays(); if (lMAArrays==null) lMAArrays = new LMAArrays();
lMAArrays.jTByDiff = new double [jacobian.length]; lMAArrays.jTByDiff = new double [jacobian.length];
for (int i=0; i < lMAArrays.jTByDiff.length; i++){ for (int i=0; i < lMAArrays.jTByDiff.length; i++){
lMAArrays.jTByDiff[i] = 0; lMAArrays.jTByDiff[i] = 0;
for (int k = 0; k< jacobian[i].length; k++){ for (int k = 0; k< jacobian[i].length; k++){
if (map_from_fx[k][0]==0){ if (k<conv_len) {
lMAArrays.jTByDiff[i] += jacobian[i][k]*(target_kernel[map_from_fx[k][1]]-fX[k]); lMAArrays.jTByDiff[i] += jacobian[i][k]*(target_kernel[k]-fX[k])*weight[k];
} else { } else {
lMAArrays.jTByDiff[i] += jacobian[i][k]*(-fX[k]); lMAArrays.jTByDiff[i] += jacobian[i][k]*(-fX[k])*weight[k];
} }
} }
} }
...@@ -724,20 +673,34 @@ public class FactorConvKernel { ...@@ -724,20 +673,34 @@ public class FactorConvKernel {
return lMAArrays.jTByDiff; return lMAArrays.jTByDiff;
} }
private double[] getDiffByDiff() private double[] getDiffByDiffW()
{ {
double [] diffByDiff = {0.0,0.0}; double [] diffByDiff = {0.0,0.0};
for (int k = 0; k<fX.length; k++){ for (int i = 0; i< this.weights[0].length; i++){
double d; double d = target_kernel[i]-fX[i];
if (map_from_fx[k][0]==0) d = target_kernel[map_from_fx[k][1]]-fX[k]; diffByDiff[0] += d*d*weight[i];
else d = -fX[k]; }
d=d*d; diffByDiff[1] = diffByDiff[0];
diffByDiff[0] += d; for (int i = 0; i < this.weights[1].length; i++){
if (map_from_fx[k][0]==0) diffByDiff[1] += d; double d = -fX[i];
diffByDiff[0] += d*d*weight[i];
} }
return diffByDiff; return diffByDiff;
} }
public double getTargetRMSW(){
double [] w = getTargetWeights(); // will generate if null
double trms = 0.0;
double sw = 0.0;
for (int i = 0; i< w.length; i++){
double d = target_kernel[i];
trms += d*d*w[i];
sw+= w[i];
}
return Math.sqrt(trms/sw);
}
public double [] solveLMA( public double [] solveLMA(
double lambda, double lambda,
int debugLevel){ int debugLevel){
...@@ -750,7 +713,7 @@ public class FactorConvKernel { ...@@ -750,7 +713,7 @@ public class FactorConvKernel {
} }
// M*Ma=Mb // M*Ma=Mb
Matrix M=new Matrix(JtByJmod); Matrix M=new Matrix(JtByJmod);
if (debugLevel>2) { if (debugLevel > 3) {
System.out.println("Jt*J -lambda* diag(Jt*J), lambda="+lambda+":"); System.out.println("Jt*J -lambda* diag(Jt*J), lambda="+lambda+":");
M.print(10, 5); M.print(10, 5);
} }
...@@ -797,6 +760,10 @@ public class FactorConvKernel { ...@@ -797,6 +760,10 @@ public class FactorConvKernel {
this.sym_radius = sym_radius; this.sym_radius = sym_radius;
} }
public void setTargetWindowMode(int mode){
target_window_mode = mode;
}
public double [] generateAsymWeights( public double [] generateAsymWeights(
int asym_size, int asym_size,
double scale, double scale,
...@@ -841,7 +808,7 @@ public class FactorConvKernel { ...@@ -841,7 +808,7 @@ public class FactorConvKernel {
lMAData.updateAsymKernelMask(mask); // this will zero out asym_kernel elements that are masked out lMAData.updateAsymKernelMask(mask); // this will zero out asym_kernel elements that are masked out
} }
if (debugLevel>0){ if (debugLevel > 1){
if (mask == null){ if (mask == null){
System.out.println("mask is null, retrieving from the kernels"); System.out.println("mask is null, retrieving from the kernels");
mask = lMAData.getAsymKernelMask(); mask = lMAData.getAsymKernelMask();
...@@ -863,7 +830,7 @@ public class FactorConvKernel { ...@@ -863,7 +830,7 @@ public class FactorConvKernel {
this.center_i0, // double yc, this.center_i0, // double yc,
this.asym_tax_free); // int taxfree); this.asym_tax_free); // int taxfree);
lMAData.setAsymWeights (asym_weights); lMAData.setAsymWeights (asym_weights);
if (this.debugLevel>2) { if (this.debugLevel > 3) {
double [][] kernels = {lMAData.getSymKernel(),lMAData.getAsymKernel()}; double [][] kernels = {lMAData.getSymKernel(),lMAData.getAsymKernel()};
System.out.println("calcKernels(): kernels data:"); System.out.println("calcKernels(): kernels data:");
for (int n=0;n<kernels.length;n++) for (int i=0;i<kernels[n].length;i++){ for (int n=0;n<kernels.length;n++) for (int i=0;i<kernels[n].length;i++){
...@@ -881,7 +848,7 @@ public class FactorConvKernel { ...@@ -881,7 +848,7 @@ public class FactorConvKernel {
} else{ } else{
initLevenbergMarquardt_old(fact_precision, seed_size, asym_random); initLevenbergMarquardt_old(fact_precision, seed_size, asym_random);
if (mask != null){ if (mask != null){
if (this.debugLevel>2) { if (this.debugLevel > 3) {
System.out.println("calcKernels(): this.currentVector 0"); System.out.println("calcKernels(): this.currentVector 0");
for (int i=63;i<this.currentVector.length;i++){ for (int i=63;i<this.currentVector.length;i++){
System.out.println(i+": "+ this.currentVector[i]); System.out.println(i+": "+ this.currentVector[i]);
...@@ -893,7 +860,7 @@ public class FactorConvKernel { ...@@ -893,7 +860,7 @@ public class FactorConvKernel {
if (Double.isNaN(this.currentVector[asym_start+i])) this.currentVector[asym_start+i] = 0.0; // replace all NaN with 0.0; if (Double.isNaN(this.currentVector[asym_start+i])) this.currentVector[asym_start+i] = 0.0; // replace all NaN with 0.0;
if (!mask[i]) this.currentVector[asym_start+i] = Double.NaN; if (!mask[i]) this.currentVector[asym_start+i] = Double.NaN;
} }
if (debugLevel>0){ if (debugLevel > 1){
System.out.println("mask.length="+mask.length+" asym_start="+asym_start+" this.currentVector.length="+this.currentVector.length); System.out.println("mask.length="+mask.length+" asym_start="+asym_start+" this.currentVector.length="+this.currentVector.length);
System.out.println("asym mask: "); System.out.println("asym mask: ");
for (int ii=0;ii < asym_size;ii++){ for (int ii=0;ii < asym_size;ii++){
...@@ -905,7 +872,7 @@ public class FactorConvKernel { ...@@ -905,7 +872,7 @@ public class FactorConvKernel {
} }
} }
} }
if (this.debugLevel>2) { if (this.debugLevel > 3) {
System.out.println("calcKernels(): this.currentVector 1"); System.out.println("calcKernels(): this.currentVector 1");
for (int i=63;i<this.currentVector.length;i++){ for (int i=63;i<this.currentVector.length;i++){
System.out.println(i+": "+ this.currentVector[i]); System.out.println(i+": "+ this.currentVector[i]);
...@@ -937,12 +904,14 @@ public class FactorConvKernel { ...@@ -937,12 +904,14 @@ public class FactorConvKernel {
this.target_kernel = target_kernel; this.target_kernel = target_kernel;
this.asym_pixels = asym_pixels; this.asym_pixels = asym_pixels;
this.asym_distance = asym_distance; this.asym_distance = asym_distance;
/*
double s = 0.0; double s = 0.0;
for (int i = 0; i<target_kernel.length; i++){ for (int i = 0; i<target_kernel.length; i++){
s+= target_kernel[i]*target_kernel[i]; s+= target_kernel[i]*target_kernel[i];
} }
this.goal_rms_pure = Math.sqrt(s/target_kernel.length)*fact_precision; this.goal_rms_pure = Math.sqrt(s/target_kernel.length)*fact_precision;
this.target_rms = Math.sqrt(s/target_kernel.length); */
double [] RMSes = null; double [] RMSes = null;
// double [] bestRms = new double [asym_pixels]; // double [] bestRms = new double [asym_pixels];
// int [] enPixels = new int [asym_pixels]; // int [] enPixels = new int [asym_pixels];
...@@ -951,8 +920,10 @@ public class FactorConvKernel { ...@@ -951,8 +920,10 @@ public class FactorConvKernel {
int numAny=0; int numAny=0;
initLevenbergMarquardt(fact_precision, seed_size,0.0); initLevenbergMarquardt(fact_precision, seed_size,0.0);
this.goal_rms_pure = lMAData.getTargetRMSW()*fact_precision;
this.target_rms = lMAData.getTargetRMSW(); //Math.sqrt(s/target_kernel.length);
if (debugLevel>0){ if (debugLevel > 1){
boolean [] mask = lMAData.getAsymKernelMask(); boolean [] mask = lMAData.getAsymKernelMask();
System.out.println("mask.length="+mask.length); System.out.println("mask.length="+mask.length);
System.out.println("asym mask: "); System.out.println("asym mask: ");
...@@ -987,7 +958,7 @@ public class FactorConvKernel { ...@@ -987,7 +958,7 @@ public class FactorConvKernel {
for (int i = 0; i < asym_mask.length; i++) if (asym_mask[i]) numAsym++; for (int i = 0; i < asym_mask.length; i++) if (asym_mask[i]) numAsym++;
if (numAsym >= asym_pixels) break; if (numAsym >= asym_pixels) break;
if ((RMSes!=null) && (RMSes[1] < this.goal_rms_pure)){ if ((RMSes!=null) && (RMSes[1] < this.goal_rms_pure)){
if (debugLevel>0){ if (debugLevel > 1){
System.out.println("calcKernels(): reached goal: "+RMSes[1]+" < "+this.goal_rms_pure); System.out.println("calcKernels(): reached goal: "+RMSes[1]+" < "+this.goal_rms_pure);
} }
break; break;
...@@ -997,13 +968,13 @@ public class FactorConvKernel { ...@@ -997,13 +968,13 @@ public class FactorConvKernel {
RMSes[0], // if Double.NaN - will not compare against it, return the best one RMSes[0], // if Double.NaN - will not compare against it, return the best one
-1); // no skip points -1); // no skip points
if (RMSes == null) { if (RMSes == null) {
if (debugLevel>0) { if (debugLevel > 1) {
System.out.println("calcKernels(): failed to add cell"); System.out.println("calcKernels(): failed to add cell");
} }
return numAsym; return numAsym;
} }
} }
if (debugLevel>0){ if (debugLevel > 0){
System.out.println( System.out.println(
"Finished adding cells, number of LMA runs = "+getLMARuns()+ "Finished adding cells, number of LMA runs = "+getLMARuns()+
", RMS = "+RMSes[0]+ ", RMS = "+RMSes[0]+
...@@ -1011,7 +982,7 @@ public class FactorConvKernel { ...@@ -1011,7 +982,7 @@ public class FactorConvKernel {
", relRMSPure = "+(RMSes[1]/this.target_rms)+ ", relRMSPure = "+(RMSes[1]/this.target_rms)+
", spent "+ IJ.d2s(0.000000001*(System.nanoTime()-startTime),3)+" sec"); ", spent "+ IJ.d2s(0.000000001*(System.nanoTime()-startTime),3)+" sec");
} }
if (debugLevel>0){ if (debugLevel > 0){
boolean [] am = lMAData.getAsymKernelMask(); boolean [] am = lMAData.getAsymKernelMask();
for (int ii=0;ii < asym_size;ii++){ for (int ii=0;ii < asym_size;ii++){
System.out.print(ii+": "); System.out.print(ii+": ");
...@@ -1065,7 +1036,7 @@ public class FactorConvKernel { ...@@ -1065,7 +1036,7 @@ public class FactorConvKernel {
} }
if (debugLevel>0){ if (debugLevel > 0){
System.out.println( System.out.println(
"Finished replacing weakiest cells, number of LMA runs = "+getLMARuns()+ ", number of weakest replaced = "+numWeakest+ "Finished replacing weakiest cells, number of LMA runs = "+getLMARuns()+ ", number of weakest replaced = "+numWeakest+
", RMS = "+RMSes[0]+ ", RMS = "+RMSes[0]+
...@@ -1073,7 +1044,7 @@ public class FactorConvKernel { ...@@ -1073,7 +1044,7 @@ public class FactorConvKernel {
", relRMSPure = "+(RMSes[1]/this.target_rms)+ ", relRMSPure = "+(RMSes[1]/this.target_rms)+
", spent "+ IJ.d2s(0.000000001*(System.nanoTime()-startTime),3)+" sec"); ", spent "+ IJ.d2s(0.000000001*(System.nanoTime()-startTime),3)+" sec");
} }
if (debugLevel>0){ if (debugLevel > 0){
boolean [] am = lMAData.getAsymKernelMask(); boolean [] am = lMAData.getAsymKernelMask();
for (int ii=0;ii < asym_size;ii++){ for (int ii=0;ii < asym_size;ii++){
System.out.print(ii+": "); System.out.print(ii+": ");
...@@ -1085,7 +1056,7 @@ public class FactorConvKernel { ...@@ -1085,7 +1056,7 @@ public class FactorConvKernel {
} }
/* /*
if ((RMSes!=null) && (RMSes[1] < this.goal_rms_pure)){ if ((RMSes!=null) && (RMSes[1] < this.goal_rms_pure)){
if (debugLevel>0){ if (debugLevel > 0){
System.out.println("calcKernels(): reached goal: "+RMSes[1]+" < "+this.goal_rms_pure); System.out.println("calcKernels(): reached goal: "+RMSes[1]+" < "+this.goal_rms_pure);
} }
} else { } else {
...@@ -1099,14 +1070,14 @@ public class FactorConvKernel { ...@@ -1099,14 +1070,14 @@ public class FactorConvKernel {
} }
RMSes = newRMSes; RMSes = newRMSes;
numAny++; numAny++;
if (debugLevel>0){ if (debugLevel > 0){
System.out.println( System.out.println(
"Replaced a cell (not the weakest), total number "+numAny+", number of LMA runs = "+getLMARuns()+ "Replaced a cell (not the weakest), total number "+numAny+", number of LMA runs = "+getLMARuns()+
", RMS = "+RMSes[0]+ ", RMS = "+RMSes[0]+
", RMSPure = "+RMSes[1]+ ", RMSPure = "+RMSes[1]+
", spent "+ IJ.d2s(0.000000001*(System.nanoTime()-startTime),3)+" sec"); ", spent "+ IJ.d2s(0.000000001*(System.nanoTime()-startTime),3)+" sec");
} }
if (debugLevel>0){ if (debugLevel > 0){
boolean [] am = lMAData.getAsymKernelMask(); boolean [] am = lMAData.getAsymKernelMask();
for (int ii=0;ii < asym_size;ii++){ for (int ii=0;ii < asym_size;ii++){
System.out.print(ii+": "); System.out.print(ii+": ");
...@@ -1127,7 +1098,7 @@ public class FactorConvKernel { ...@@ -1127,7 +1098,7 @@ public class FactorConvKernel {
} }
*/ */
} }
if (debugLevel>0){ if (debugLevel > 0){
System.out.println( System.out.println(
"Finished replacing (any) cells, number of LMA runs = "+getLMARuns()+", number of cells replaced - "+numAny+ "Finished replacing (any) cells, number of LMA runs = "+getLMARuns()+", number of cells replaced - "+numAny+
", RMS = "+RMSes[0]+ ", RMS = "+RMSes[0]+
...@@ -1135,7 +1106,7 @@ public class FactorConvKernel { ...@@ -1135,7 +1106,7 @@ public class FactorConvKernel {
", relRMSPure = "+(RMSes[1]/this.target_rms)+ ", relRMSPure = "+(RMSes[1]/this.target_rms)+
", spent "+ IJ.d2s(0.000000001*(System.nanoTime()-startTime),3)+" sec"); ", spent "+ IJ.d2s(0.000000001*(System.nanoTime()-startTime),3)+" sec");
} }
if (debugLevel>0){ if (debugLevel > 0){
boolean [] am = lMAData.getAsymKernelMask(); boolean [] am = lMAData.getAsymKernelMask();
for (int ii=0;ii < asym_size;ii++){ for (int ii=0;ii < asym_size;ii++){
System.out.print(ii+": "); System.out.print(ii+": ");
...@@ -1200,7 +1171,7 @@ public class FactorConvKernel { ...@@ -1200,7 +1171,7 @@ public class FactorConvKernel {
*/ */
int numPixels = 0; int numPixels = 0;
for (numPixels = 1; numPixels < asym_pixels; numPixels++) { for (numPixels = 1; numPixels < asym_pixels; numPixels++) {
if (debugLevel >0) { if (debugLevel > 0) {
System.out.println("calcKernels() numPixels="+numPixels); System.out.println("calcKernels() numPixels="+numPixels);
} }
...@@ -1254,7 +1225,7 @@ public class FactorConvKernel { ...@@ -1254,7 +1225,7 @@ public class FactorConvKernel {
System.out.println("calcKernels() numPixels="+numPixels); System.out.println("calcKernels() numPixels="+numPixels);
} }
} }
if (debugLevel >0) { if (debugLevel > 0) {
System.out.println("mask/mask0: , asym_size="+asym_size+" mask0.length="+mask0.length); System.out.println("mask/mask0: , asym_size="+asym_size+" mask0.length="+mask0.length);
for (int i=0;i<asym_size;i++){ for (int i=0;i<asym_size;i++){
System.out.print(i+": "); System.out.print(i+": ");
...@@ -1281,7 +1252,7 @@ public class FactorConvKernel { ...@@ -1281,7 +1252,7 @@ public class FactorConvKernel {
this.currentVector = initialVector.clone(); this.currentVector = initialVector.clone();
for (int i = 0; i<mask0.length; i++) if (!mask0[i]) this.currentVector[asym_start+i] = Double.NaN; for (int i = 0; i<mask0.length; i++) if (!mask0[i]) this.currentVector[asym_start+i] = Double.NaN;
if (debugLevel >0) { if (debugLevel > 0) {
System.out.println("+++ mask0: asym_size="+asym_size+" mask0.length="+mask0.length); System.out.println("+++ mask0: asym_size="+asym_size+" mask0.length="+mask0.length);
for (int i=0;i<asym_size;i++){ for (int i=0;i<asym_size;i++){
System.out.print(i+": "); System.out.print(i+": ");
...@@ -1295,18 +1266,18 @@ public class FactorConvKernel { ...@@ -1295,18 +1266,18 @@ public class FactorConvKernel {
} }
if (debugLevel >1) { if (debugLevel > 1) {
System.out.println("Before calling levenbergMarquardt_old numPixels = "+numPixels+" ncand="+ncand); System.out.println("Before calling levenbergMarquardt_old numPixels = "+numPixels+" ncand="+ncand);
} }
OK = levenbergMarquardt_old(); OK = levenbergMarquardt_old();
num_lma++; num_lma++;
if (debugLevel >1) { if (debugLevel > 1) {
System.out.println("After calling levenbergMarquardt_old, OK="+OK+" numPixels = "+numPixels+" ncand="+ncand); System.out.println("After calling levenbergMarquardt_old, OK="+OK+" numPixels = "+numPixels+" ncand="+ncand);
} }
if (debugLevel >2) { if (debugLevel > 2) {
for (int i=asym_start;i< this.currentVector.length;i++){ for (int i=asym_start;i< this.currentVector.length;i++){
System.out.println("currentVector["+i+"]="+currentVector[i]); System.out.println("currentVector["+i+"]="+currentVector[i]);
} }
...@@ -1322,7 +1293,7 @@ public class FactorConvKernel { ...@@ -1322,7 +1293,7 @@ public class FactorConvKernel {
bestRms[numPixels] = results[best_cand]; bestRms[numPixels] = results[best_cand];
enPixels[numPixels] =asym_candidates.get(best_cand); enPixels[numPixels] =asym_candidates.get(best_cand);
if (results[best_cand] < this.goal_rms_pure) { if (results[best_cand] < this.goal_rms_pure) {
if (debugLevel >0) { if (debugLevel > 0) {
System.out.println("Reached goal at numPixels="+(numPixels+1)+ " results["+best_cand+"]= "+results[best_cand]+" < "+this.goal_rms_pure); System.out.println("Reached goal at numPixels="+(numPixels+1)+ " results["+best_cand+"]= "+results[best_cand]+" < "+this.goal_rms_pure);
} }
numPixels++; numPixels++;
...@@ -1337,7 +1308,7 @@ public class FactorConvKernel { ...@@ -1337,7 +1308,7 @@ public class FactorConvKernel {
this.currentVector = initialVector.clone(); this.currentVector = initialVector.clone();
for (int i = 0; i<mask.length; i++) if (!mask[i]) this.currentVector[asym_start+i] = Double.NaN; for (int i = 0; i<mask.length; i++) if (!mask[i]) this.currentVector[asym_start+i] = Double.NaN;
if (debugLevel >0) { if (debugLevel > 0) {
System.out.println("Final mask"); System.out.println("Final mask");
for (int i=0;i<asym_size;i++){ for (int i=0;i<asym_size;i++){
System.out.print(i+": "); System.out.print(i+": ");
...@@ -1352,7 +1323,7 @@ public class FactorConvKernel { ...@@ -1352,7 +1323,7 @@ public class FactorConvKernel {
OK = levenbergMarquardt_old(); OK = levenbergMarquardt_old();
if (debugLevel >0) { if (debugLevel > 0) {
for (int i = 0; i< numPixels; i++){ for (int i = 0; i< numPixels; i++){
System.out.println(i+": "+bestRms[i]+" i="+(enPixels[i]/asym_size)+" j="+(enPixels[i]%asym_size)); System.out.println(i+": "+bestRms[i]+" i="+(enPixels[i]/asym_size)+" j="+(enPixels[i]%asym_size));
} }
...@@ -1390,10 +1361,10 @@ public class FactorConvKernel { ...@@ -1390,10 +1361,10 @@ public class FactorConvKernel {
asym_mask[candidates[n]] = true; asym_mask[candidates[n]] = true;
lMAData.updateAsymKernelMask(asym_mask); // will set new asym_kernel values to 0; lMAData.updateAsymKernelMask(asym_mask); // will set new asym_kernel values to 0;
// First - just adjust asym // First - just adjust asym
if (debugLevel>1) System.out.println("Running asym-only LMA"); if (debugLevel > 1) System.out.println("Running asym-only LMA");
lMAData.setSymKernel(null, sym_mask_frozen); lMAData.setSymKernel(null, sym_mask_frozen);
levenbergMarquardt(); levenbergMarquardt();
if (debugLevel>1) System.out.println("Running full LMA"); if (debugLevel > 1) System.out.println("Running full LMA");
lMAData.setSymKernel(null, saved_kernel_masks[0]); lMAData.setSymKernel(null, saved_kernel_masks[0]);
if ( levenbergMarquardt()) { if ( levenbergMarquardt()) {
results[n] = lMAData.getRMSes().clone(); results[n] = lMAData.getRMSes().clone();
...@@ -1449,7 +1420,7 @@ public class FactorConvKernel { ...@@ -1449,7 +1420,7 @@ public class FactorConvKernel {
if (RMSes == null){ if (RMSes == null){
System.out.println("replaceWeakest(): Failed to find any replacements at all"); System.out.println("replaceWeakest(): Failed to find any replacements at all");
} else if (RMSes[0] > was_rms){ } else if (RMSes[0] > was_rms){
if (this.debugLevel>1){ if (this.debugLevel > 1){
System.out.println("replaceWeakest(): Failed to find a better replacemnet ("+ RMSes[0]+">"+was_rms+")"); System.out.println("replaceWeakest(): Failed to find a better replacemnet ("+ RMSes[0]+">"+was_rms+")");
} }
RMSes = null; RMSes = null;
...@@ -1489,7 +1460,7 @@ public class FactorConvKernel { ...@@ -1489,7 +1460,7 @@ public class FactorConvKernel {
if (results[removedCell] == null){ if (results[removedCell] == null){
System.out.println("replaceAny(): Failed to find any replacements at all"); System.out.println("replaceAny(): Failed to find any replacements at all");
} else if (results[removedCell][0] > was_rms){ } else if (results[removedCell][0] > was_rms){
if (this.debugLevel>2){ if (this.debugLevel > 2){
System.out.println("replaceAny(): Failed to find a better replacemnet for cell "+removedCell+" ("+ results[removedCell][0]+">"+was_rms+")"); System.out.println("replaceAny(): Failed to find a better replacemnet for cell "+removedCell+" ("+ results[removedCell][0]+">"+was_rms+")");
} }
results[removedCell] = null; results[removedCell] = null;
...@@ -1587,6 +1558,11 @@ public class FactorConvKernel { ...@@ -1587,6 +1558,11 @@ public class FactorConvKernel {
return getAsymKernel(currentVector,1.0/sym_kernel_scale); return getAsymKernel(currentVector,1.0/sym_kernel_scale);
} }
public double [] getTargetWeights(){
if (new_mode) return lMAData.getTargetWeights();
return null;
}
public double [] getConvolved(){ // check that it matches original public double [] getConvolved(){ // check that it matches original
if (new_mode) { if (new_mode) {
return lMAData.getConvolved(true); //boolean skip_disabled_asym return lMAData.getConvolved(true); //boolean skip_disabled_asym
...@@ -2172,12 +2148,15 @@ public class FactorConvKernel { ...@@ -2172,12 +2148,15 @@ public class FactorConvKernel {
private void initLevenbergMarquardt(double fact_precision, int seed_size, double asym_random){ private void initLevenbergMarquardt(double fact_precision, int seed_size, double asym_random){
lMAData = new LMAData(debugLevel); lMAData = new LMAData(debugLevel);
lMAData.setTarget(target_kernel); lMAData.setTarget(target_kernel);
lMAData.setTargetWindowMode(target_window_mode);
double s = 0.0; /* double s = 0.0;
for (int i = 0; i<target_kernel.length; i++){ for (int i = 0; i<target_kernel.length; i++){
s+= target_kernel[i]*target_kernel[i]; s+= target_kernel[i]*target_kernel[i];
} }
this.goal_rms_pure = Math.sqrt(s/target_kernel.length)*fact_precision; this.goal_rms_pure = Math.sqrt(s/target_kernel.length)*fact_precision;
*/
// this.currentVector = setInitialVector(target_kernel, null); // should be (asym_size + 2*sym_radius-1)**2 // this.currentVector = setInitialVector(target_kernel, null); // should be (asym_size + 2*sym_radius-1)**2
double [][]kernels = setInitialVector(target_kernel, seed_size, asym_random); // should be (asym_size + 2*sym_radius-1)**2 double [][]kernels = setInitialVector(target_kernel, seed_size, asym_random); // should be (asym_size + 2*sym_radius-1)**2
sym_kernel_scale = kernels[0][0]; sym_kernel_scale = kernels[0][0];
...@@ -2185,6 +2164,9 @@ public class FactorConvKernel { ...@@ -2185,6 +2164,9 @@ public class FactorConvKernel {
for (int i=0;i<kernels[1].length;i++) if (!Double.isNaN(kernels[1][i])) kernels[1][i] *=sym_kernel_scale; for (int i=0;i<kernels[1].length;i++) if (!Double.isNaN(kernels[1][i])) kernels[1][i] *=sym_kernel_scale;
lMAData.setSymKernel (kernels[0]); lMAData.setSymKernel (kernels[0]);
lMAData.setAsymKernel(kernels[1]); lMAData.setAsymKernel(kernels[1]);
this.goal_rms_pure = lMAData.getTargetRMSW()*fact_precision;
this.target_rms = lMAData.getTargetRMSW(); //Math.sqrt(s/target_kernel.length);
// lMAData.invalidateLMAArrays(); // should be in each run , not at init // lMAData.invalidateLMAArrays(); // should be in each run , not at init
resetLMARuns(); resetLMARuns();
// this.currentVector = setVectorFromKernels(kernels[0], kernels[1]); // this.currentVector = setVectorFromKernels(kernels[0], kernels[1]);
...@@ -2205,38 +2187,38 @@ public class FactorConvKernel { ...@@ -2205,38 +2187,38 @@ public class FactorConvKernel {
return true; return true;
} }
if (this.debugLevel>2) { if (this.debugLevel > 3) {
System.out.println("this.currentVector 0"); System.out.println("this.currentVector 0");
double [] dbg_vector = lMAData.getVector(); double [] dbg_vector = lMAData.getVector();
for (int i=63;i<dbg_vector.length;i++){ for (int i=63;i<dbg_vector.length;i++){
System.out.println(i+": "+ dbg_vector[i]); System.out.println(i+": "+ dbg_vector[i]);
} }
} }
if (this.debugLevel>1){ if (this.debugLevel>2){
System.out.println("LMA before loop, RMS = "+lMAData.getRMSes()[0]+", pure="+lMAData.getRMSes()[1]); System.out.println("LMA before loop, RMS = "+lMAData.getRMSes()[0]+", pure="+lMAData.getRMSes()[1]);
} }
while (true) { // loop for the same series while (true) { // loop for the same series
boolean [] state=stepLevenbergMarquardt(goal_rms_pure); boolean [] state=stepLevenbergMarquardt(goal_rms_pure);
if ((this.iterationStepNumber==1) && (this.debugLevel > 1)){ if ((this.iterationStepNumber==1) && (this.debugLevel > 2)){
System.out.println("LMA after first stepLevenbergMarquardt, RMS = "+lMAData.getRMSes()[0]+", pure="+lMAData.getRMSes()[1]); System.out.println("LMA after first stepLevenbergMarquardt, RMS = "+lMAData.getRMSes()[0]+", pure="+lMAData.getRMSes()[1]);
} }
// state[0] - better, state[1] - finished // state[0] - better, state[1] - finished
if (this.debugLevel>1) System.out.println(this.iterationStepNumber+": stepLevenbergMarquardt()==>"+state[1]+":"+state[0]); if (this.debugLevel > 2) System.out.println(this.iterationStepNumber+": stepLevenbergMarquardt()==>"+state[1]+":"+state[0]);
// boolean cont=true; // boolean cont=true;
// Make it success if this.currentRMS<this.firstRMS even if LMA failed to converge // Make it success if this.currentRMS<this.firstRMS even if LMA failed to converge
if (state[1] && !state[0] && (lMAData.getFirstRMSes()[0] > lMAData.getRMSes()[0])) { if (state[1] && !state[0] && (lMAData.getFirstRMSes()[0] > lMAData.getRMSes()[0])) {
if (this.debugLevel>1) System.out.println("LMA failed to converge, but RMS improved from the initial value ("+lMAData.getRMSes()[0]+" < "+lMAData.getFirstRMSes()[0]+")"); if (this.debugLevel > 2) System.out.println("LMA failed to converge, but RMS improved from the initial value ("+lMAData.getRMSes()[0]+" < "+lMAData.getFirstRMSes()[0]+")");
state[0]=true; state[0]=true;
} }
if (this.debugLevel>0){ if (this.debugLevel > 1){
if (state[1] && !state[0]){ // failure, show at debugLevel >0 if (state[1] && !state[0]){ // failure, show at debugLevel >0
System.out.println("LevenbergMarquardt(): failed step ="+this.iterationStepNumber+ System.out.println("LevenbergMarquardt(): failed step ="+this.iterationStepNumber+
", RMS="+IJ.d2s(lMAData.getRMSes()[0], 8)+ ", RMS="+IJ.d2s(lMAData.getRMSes()[0], 8)+
" ("+IJ.d2s(lMAData.getFirstRMSes()[0], 8)+") "+ " ("+IJ.d2s(lMAData.getFirstRMSes()[0], 8)+") "+
") at "+ IJ.d2s(0.000000001*(System.nanoTime()- startTime), 3)); ") at "+ IJ.d2s(0.000000001*(System.nanoTime()- startTime), 3));
} else if (this.debugLevel>1){ // success: show only if debugLevel > 1 } else if (this.debugLevel > 2){ // success: show only if debugLevel > 1
System.out.println("==> LevenbergMarquardt(): before action step ="+this.iterationStepNumber+ System.out.println("==> LevenbergMarquardt(): before action step ="+this.iterationStepNumber+
", RMS="+IJ.d2s(lMAData.getRMSes()[0], 8)+ ", RMS="+IJ.d2s(lMAData.getRMSes()[0], 8)+
" ("+IJ.d2s(lMAData.getFirstRMSes()[0], 8)+") "+ " ("+IJ.d2s(lMAData.getFirstRMSes()[0], 8)+") "+
...@@ -2245,7 +2227,7 @@ public class FactorConvKernel { ...@@ -2245,7 +2227,7 @@ public class FactorConvKernel {
} }
// stepLevenbergMarquardtAction(startTime); // apply step - in any case? // stepLevenbergMarquardtAction(startTime); // apply step - in any case?
this.iterationStepNumber++; this.iterationStepNumber++;
if (this.debugLevel>1) { if (this.debugLevel > 2) {
System.out.println( System.out.println(
"stepLevenbergMarquardtAction() step="+this.iterationStepNumber+ "stepLevenbergMarquardtAction() step="+this.iterationStepNumber+
", this.currentRMS="+lMAData.getSavedRMSes()[0]+ ", this.currentRMS="+lMAData.getSavedRMSes()[0]+
...@@ -2262,7 +2244,7 @@ public class FactorConvKernel { ...@@ -2262,7 +2244,7 @@ public class FactorConvKernel {
this.lambda*= this.lambdaStepUp; this.lambda*= this.lambdaStepUp;
} }
if ((this.debugLevel>0) && ((this.debugLevel>2) || ((System.nanoTime()-this.startTime)>30000000000.0))){ // > 10 sec if ((this.debugLevel > 1) && ((this.debugLevel > 3) || ((System.nanoTime()-this.startTime)>30000000000.0))){ // > 10 sec
// if ((this.debugLevel>0) && ((this.debugLevel>0) || ((System.nanoTime()-this.startTime)>10000000000.0))){ // > 10 sec // if ((this.debugLevel>0) && ((this.debugLevel>0) || ((System.nanoTime()-this.startTime)>10000000000.0))){ // > 10 sec
System.out.println("--> long wait: LevenbergMarquardt(): step = "+this.iterationStepNumber+ System.out.println("--> long wait: LevenbergMarquardt(): step = "+this.iterationStepNumber+
", RMS="+IJ.d2s(lMAData.getRMSes()[0],8)+ ", RMS="+IJ.d2s(lMAData.getRMSes()[0],8)+
...@@ -2277,17 +2259,17 @@ public class FactorConvKernel { ...@@ -2277,17 +2259,17 @@ public class FactorConvKernel {
break; // while (true), proceed to the next series break; // while (true), proceed to the next series
} }
} }
if (this.debugLevel>1) System.out.println("LevenbergMarquardt() finished in "+this.iterationStepNumber+ if (this.debugLevel > 1) System.out.println("LevenbergMarquardt() finished in "+this.iterationStepNumber+
" steps, RMS="+lMAData.getRMSes()[0]+ " steps, RMS="+lMAData.getRMSes()[0]+
" ("+lMAData.getFirstRMSes()[0]+") "+ " ("+lMAData.getFirstRMSes()[0]+") "+
", RMSpure="+lMAData.getRMSes()[1]+ ", RMSpure="+lMAData.getRMSes()[1]+
" ("+lMAData.getFirstRMSes()[1]+") "+ " ("+lMAData.getFirstRMSes()[1]+") "+
"at "+ IJ.d2s(0.000000001*(System.nanoTime()- startTime),3)); ", Relative RMS="+ (lMAData.getRMSes()[1]/this.target_rms)+
" at "+ IJ.d2s(0.000000001*(System.nanoTime()- startTime),3));
numLMARuns++; numLMARuns++;
return true; // all series done return true; // all series done
} }
private boolean [] stepLevenbergMarquardt(double goal_rms_pure){ private boolean [] stepLevenbergMarquardt(double goal_rms_pure){
double [] deltas=null; double [] deltas=null;
// System.out.println("lMAData.isValidLMAArrays()="+lMAData.isValidLMAArrays()); // System.out.println("lMAData.isValidLMAArrays()="+lMAData.isValidLMAArrays());
...@@ -2296,11 +2278,11 @@ public class FactorConvKernel { ...@@ -2296,11 +2278,11 @@ public class FactorConvKernel {
lMAData.getJacobian( lMAData.getJacobian(
true, // boolean recalculate, true, // boolean recalculate,
true); //boolean skip_disabled_asym) true); //boolean skip_disabled_asym)
lMAData.getJTByJ(true); // force recalculate (it is null anyway) lMAData.getJTByJW(true); // force recalculate (it is null anyway)
lMAData.getJTByDiff(true); // force recalculate lMAData.getJTByDiffW(true); // force recalculate
if (debugLevel >2) { if (debugLevel >2) {
double [][] jTByJ = lMAData.getJTByJ(false); // do not recalculate double [][] jTByJ = lMAData.getJTByJW(false); // do not recalculate
double [] jTByDiff = lMAData.getJTByDiff(false); // do not recalculate double [] jTByDiff = lMAData.getJTByDiffW(false); // do not recalculate
int [][] map_from_pars = lMAData.getMapFromPars(); int [][] map_from_pars = lMAData.getMapFromPars();
for (int n=0; n < jTByJ.length;n++) if ((debugLevel > 3) || (map_from_pars[n][0]==1)){ for (int n=0; n < jTByJ.length;n++) if ((debugLevel > 3) || (map_from_pars[n][0]==1)){
...@@ -2310,7 +2292,7 @@ public class FactorConvKernel { ...@@ -2310,7 +2292,7 @@ public class FactorConvKernel {
System.out.println("jTByDiff["+n+"]="+jTByDiff[n]); System.out.println("jTByDiff["+n+"]="+jTByDiff[n]);
} }
} }
if (this.debugLevel>1) { if (this.debugLevel > 2) {
System.out.println("initial RMS="+IJ.d2s(lMAData.getRMSes()[0],8)+ System.out.println("initial RMS="+IJ.d2s(lMAData.getRMSes()[0],8)+
" ("+IJ.d2s(lMAData.getRMSes()[1],8)+")"+ " ("+IJ.d2s(lMAData.getRMSes()[1],8)+")"+
". Calculating next Jacobian. Points:"+lMAData.getNumPoints()+"("+lMAData.getNumPurePoints()+")"+ ". Calculating next Jacobian. Points:"+lMAData.getNumPoints()+"("+lMAData.getNumPurePoints()+")"+
...@@ -2319,7 +2301,7 @@ public class FactorConvKernel { ...@@ -2319,7 +2301,7 @@ public class FactorConvKernel {
lMAData.save(); // save kernels (vector), fX and RMS values lMAData.save(); // save kernels (vector), fX and RMS values
} else { // LMA arrays already calculated after previous failure } else { // LMA arrays already calculated after previous failure
if (debugLevel > 2){ if (debugLevel > 3){
System.out.println("existing data: this.currentRMS="+IJ.d2s(lMAData.getRMSes()[0], 8)+ System.out.println("existing data: this.currentRMS="+IJ.d2s(lMAData.getRMSes()[0], 8)+
" ("+IJ.d2s(lMAData.getRMSes()[1], 8)+")"); " ("+IJ.d2s(lMAData.getRMSes()[1], 8)+")");
} }
...@@ -2337,7 +2319,7 @@ public class FactorConvKernel { ...@@ -2337,7 +2319,7 @@ public class FactorConvKernel {
boolean [] status={false, true}; // done / bad boolean [] status={false, true}; // done / bad
return status; // done, bad . No need to restore - nothing was changed return status; // done, bad . No need to restore - nothing was changed
} }
if (this.debugLevel > 2 ){ if (this.debugLevel > 3 ){
System.out.println("--- deltas ---"+" this.currentRMS="+lMAData.getRMSes()[0]); System.out.println("--- deltas ---"+" this.currentRMS="+lMAData.getRMSes()[0]);
int [][] map_from_pars = lMAData.getMapFromPars(); int [][] map_from_pars = lMAData.getMapFromPars();
for (int i=0; i < deltas.length; i++) if ((debugLevel > 3) || (map_from_pars[i][0]==1)) { for (int i=0; i < deltas.length; i++) if ((debugLevel > 3) || (map_from_pars[i][0]==1)) {
...@@ -2347,7 +2329,7 @@ public class FactorConvKernel { ...@@ -2347,7 +2329,7 @@ public class FactorConvKernel {
// apply deltas // apply deltas
lMAData.applyDeltas(deltas); lMAData.applyDeltas(deltas);
if (this.debugLevel > 2) { if (this.debugLevel > 3) {
System.out.println("modified Vector"); System.out.println("modified Vector");
double [] dbg_vector = lMAData.getVector(); double [] dbg_vector = lMAData.getVector();
int [][] map_from_pars = lMAData.getMapFromPars(); int [][] map_from_pars = lMAData.getMapFromPars();
...@@ -2362,7 +2344,7 @@ public class FactorConvKernel { ...@@ -2362,7 +2344,7 @@ public class FactorConvKernel {
this.lastImprovements[1]=this.lastImprovements[0]; this.lastImprovements[1]=this.lastImprovements[0];
this.lastImprovements[0]=lMAData.getSavedRMSes()[0] - lMAData.getRMSes()[0]; // this.currentRMS-this.nextRMS; this.lastImprovements[0]=lMAData.getSavedRMSes()[0] - lMAData.getRMSes()[0]; // this.currentRMS-this.nextRMS;
if (this.debugLevel>2) { if (this.debugLevel > 3) {
System.out.println("stepLMA currentRMS="+lMAData.getSavedRMSes()[0]+ System.out.println("stepLMA currentRMS="+lMAData.getSavedRMSes()[0]+
", nextRMS="+lMAData.getRMSes()[0]+ ", nextRMS="+lMAData.getRMSes()[0]+
", delta="+(lMAData.getSavedRMSes()[0]-lMAData.getRMSes()[0])); ", delta="+(lMAData.getSavedRMSes()[0]-lMAData.getRMSes()[0]));
...@@ -2377,7 +2359,7 @@ public class FactorConvKernel { ...@@ -2377,7 +2359,7 @@ public class FactorConvKernel {
status[0]=true; status[0]=true;
status[1]=true; status[1]=true;
this.lastImprovements[0]=0.0; this.lastImprovements[0]=0.0;
if (this.debugLevel>1) { if (this.debugLevel > 2) {
System.out.println("New RMS error is larger than the old one, but the difference is too small to be trusted "); System.out.println("New RMS error is larger than the old one, but the difference is too small to be trusted ");
System.out.println( System.out.println(
"stepLMA this.currentRMS="+lMAData.getSavedRMSes()[0]+ "stepLMA this.currentRMS="+lMAData.getSavedRMSes()[0]+
...@@ -2397,7 +2379,7 @@ public class FactorConvKernel { ...@@ -2397,7 +2379,7 @@ public class FactorConvKernel {
(this.lastImprovements[1]<this.thresholdFinish*lMAData.getSavedRMSes()[0])); (this.lastImprovements[1]<this.thresholdFinish*lMAData.getSavedRMSes()[0]));
if ( lMAData.getRMSes()[1] < goal_rms_pure) { if ( lMAData.getRMSes()[1] < goal_rms_pure) {
status[1] = true; status[1] = true;
if (this.debugLevel>1) { if (this.debugLevel > 2) {
System.out.println("Improvent is possible, but the factorization precision reached its goal"); System.out.println("Improvent is possible, but the factorization precision reached its goal");
System.out.println( System.out.println(
"stepLMA this.currentRMS="+lMAData.getSavedRMSes()[0]+ "stepLMA this.currentRMS="+lMAData.getSavedRMSes()[0]+
...@@ -2416,7 +2398,7 @@ public class FactorConvKernel { ...@@ -2416,7 +2398,7 @@ public class FactorConvKernel {
} }
///this.currentRMS ///this.currentRMS
//TODO: add other failures leading to result failure? //TODO: add other failures leading to result failure?
if (this.debugLevel>2) { if (this.debugLevel > 3) {
System.out.println("stepLevenbergMarquardt()=>"+status[0]+","+status[1]); System.out.println("stepLevenbergMarquardt()=>"+status[0]+","+status[1]);
} }
return status; return status;
...@@ -2463,7 +2445,7 @@ public class FactorConvKernel { ...@@ -2463,7 +2445,7 @@ public class FactorConvKernel {
return true; return true;
} }
if (this.debugLevel>2) { if (this.debugLevel > 3) {
System.out.println("this.currentVector 0"); System.out.println("this.currentVector 0");
for (int i=63;i<this.currentVector.length;i++){ for (int i=63;i<this.currentVector.length;i++){
System.out.println(i+": "+ this.currentVector[i]); System.out.println(i+": "+ this.currentVector[i]);
...@@ -2472,7 +2454,7 @@ public class FactorConvKernel { ...@@ -2472,7 +2454,7 @@ public class FactorConvKernel {
while (true) { // loop for the same series while (true) { // loop for the same series
boolean [] state=stepLevenbergMarquardtFirst_old(goal_rms_pure); boolean [] state=stepLevenbergMarquardtFirst_old(goal_rms_pure);
if (this.debugLevel>1) System.out.println(this.iterationStepNumber+": stepLevenbergMarquardtFirst_old()==>"+state[1]+":"+state[0]); if (this.debugLevel > 2) System.out.println(this.iterationStepNumber+": stepLevenbergMarquardtFirst_old()==>"+state[1]+":"+state[0]);
// boolean cont=true; // boolean cont=true;
// Make it success if this.currentRMS<this.firstRMS even if LMA failed to converge // Make it success if this.currentRMS<this.firstRMS even if LMA failed to converge
if (state[1] && !state[0] && (this.firstRMS>this.currentRMS)){ if (state[1] && !state[0] && (this.firstRMS>this.currentRMS)){
...@@ -2480,7 +2462,7 @@ public class FactorConvKernel { ...@@ -2480,7 +2462,7 @@ public class FactorConvKernel {
state[0]=true; state[0]=true;
} }
if ((this.stopOnFailure && state[1] && !state[0])){ if ((this.stopOnFailure && state[1] && !state[0])){
if (this.debugLevel>0){ if (this.debugLevel > 1){
System.out.println("LevenbergMarquardt(): step ="+this.iterationStepNumber+ System.out.println("LevenbergMarquardt(): step ="+this.iterationStepNumber+
", RMS="+IJ.d2s(this.currentRMS,8)+ ", RMS="+IJ.d2s(this.currentRMS,8)+
" ("+IJ.d2s(this.firstRMS,8)+") "+ " ("+IJ.d2s(this.firstRMS,8)+") "+
...@@ -2490,14 +2472,14 @@ public class FactorConvKernel { ...@@ -2490,14 +2472,14 @@ public class FactorConvKernel {
startTime+=(System.nanoTime()-startDialogTime); // do not count time used by the User. startTime+=(System.nanoTime()-startDialogTime); // do not count time used by the User.
// if (this.showThisImages) showDiff (this.currentfX, "fit-"+this.iterationStepNumber); // if (this.showThisImages) showDiff (this.currentfX, "fit-"+this.iterationStepNumber);
// if (this.showNextImages) showDiff (this.nextfX, "fit-"+(this.iterationStepNumber+1)); // if (this.showNextImages) showDiff (this.nextfX, "fit-"+(this.iterationStepNumber+1));
} else if (this.debugLevel>1){ } else if (this.debugLevel > 2){
System.out.println("==> LevenbergMarquardt(): before action step ="+this.iterationStepNumber+ System.out.println("==> LevenbergMarquardt(): before action step ="+this.iterationStepNumber+
", RMS="+IJ.d2s(this.currentRMS,8)+ ", RMS="+IJ.d2s(this.currentRMS,8)+
" ("+IJ.d2s(this.firstRMS,8)+") "+ " ("+IJ.d2s(this.firstRMS,8)+") "+
") at "+ IJ.d2s(0.000000001*(System.nanoTime()-startTime),3)); ") at "+ IJ.d2s(0.000000001*(System.nanoTime()-startTime),3));
} }
stepLevenbergMarquardtAction_old(startTime); // apply step - in any case? stepLevenbergMarquardtAction_old(startTime); // apply step - in any case?
if ((this.debugLevel>0) && ((this.debugLevel>1) || ((System.nanoTime()-this.startTime)>10000000000.0))){ // > 10 sec if ((this.debugLevel > 1) && ((this.debugLevel > 2) || ((System.nanoTime()-this.startTime)>10000000000.0))){ // > 10 sec
// if ((this.debugLevel>0) && ((this.debugLevel>0) || ((System.nanoTime()-this.startTime)>10000000000.0))){ // > 10 sec // if ((this.debugLevel>0) && ((this.debugLevel>0) || ((System.nanoTime()-this.startTime)>10000000000.0))){ // > 10 sec
System.out.println("--> LevenbergMarquardt(): step = "+this.iterationStepNumber+ System.out.println("--> LevenbergMarquardt(): step = "+this.iterationStepNumber+
", RMS="+IJ.d2s(this.currentRMS,8)+ ", RMS="+IJ.d2s(this.currentRMS,8)+
...@@ -2514,14 +2496,14 @@ public class FactorConvKernel { ...@@ -2514,14 +2496,14 @@ public class FactorConvKernel {
} }
} }
// if (this.fittingStrategy.isLastSeries(this.seriesNumber)) break; // if (this.fittingStrategy.isLastSeries(this.seriesNumber)) break;
if (this.debugLevel>0) System.out.println( if (this.debugLevel > 1) System.out.println(
"LevenbergMarquardt_old() finished in "+this.iterationStepNumber+ "LevenbergMarquardt_old() finished in "+this.iterationStepNumber+
" steps, RMS="+this.currentRMS+ " steps, RMS="+this.currentRMS+
" ("+this.firstRMS+")"+ " ("+this.firstRMS+")"+
", RMSPure="+this.currentRMSPure+ ", RMSPure="+this.currentRMSPure+
" ("+this.firstRMSPure+") "+ " ("+this.firstRMSPure+") "+
"at "+ IJ.d2s(0.000000001*(System.nanoTime()- startTime),3)); "at "+ IJ.d2s(0.000000001*(System.nanoTime()- startTime),3));
if (this.debugLevel>2) { if (this.debugLevel > 3) {
double worstRatio = 0; double worstRatio = 0;
int worstIndex = -1; int worstIndex = -1;
int param_index=0; int param_index=0;
...@@ -2552,13 +2534,13 @@ public class FactorConvKernel { ...@@ -2552,13 +2534,13 @@ public class FactorConvKernel {
double [] rmses; // [0]: full rms, [1]:pure rms double [] rmses; // [0]: full rms, [1]:pure rms
// moved to caller // moved to caller
// calculate this.currentfX, this.jacobian if needed // calculate this.currentfX, this.jacobian if needed
if (this.debugLevel>3) { if (this.debugLevel > 4) {
System.out.println("this.currentVector 1"); System.out.println("this.currentVector 1");
for (int i=0;i<this.currentVector.length;i++){ for (int i=0;i<this.currentVector.length;i++){
System.out.println(i+": "+ this.currentVector[i]); System.out.println(i+": "+ this.currentVector[i]);
} }
} }
if (this.debugLevel>2) { if (this.debugLevel > 3) {
System.out.println("this.currentVector 2"); System.out.println("this.currentVector 2");
for (int i=63;i<this.currentVector.length;i++){ for (int i=63;i<this.currentVector.length;i++){
System.out.println(i+": "+ this.currentVector[i]); System.out.println(i+": "+ this.currentVector[i]);
...@@ -2590,10 +2572,10 @@ public class FactorConvKernel { ...@@ -2590,10 +2572,10 @@ public class FactorConvKernel {
this.jacobian, this.jacobian,
this.target_kernel, // target kernel to factor this.target_kernel, // target kernel to factor
this.currentfX); // used to control compactness of asym_kernel this.currentfX); // used to control compactness of asym_kernel
if (debugLevel > 2) { if (debugLevel > 3) {
System.out.println("Calculated new lMAArrays, lMAArrays.jTByJ[0][0] = "+lMAArrays.jTByJ[0][0]); System.out.println("Calculated new lMAArrays, lMAArrays.jTByJ[0][0] = "+lMAArrays.jTByJ[0][0]);
} }
if (debugLevel > 2) { if (debugLevel > 3) {
for (int n=63; n < this.lMAArrays.jTByJ.length;n++){ for (int n=63; n < this.lMAArrays.jTByJ.length;n++){
for (int i=0; i < this.lMAArrays.jTByJ.length; i++){ for (int i=0; i < this.lMAArrays.jTByJ.length; i++){
System.out.println("this.lMAArrays.jTByJ["+n+"]["+i+"]="+this.lMAArrays.jTByJ[n][i]); System.out.println("this.lMAArrays.jTByJ["+n+"]["+i+"]="+this.lMAArrays.jTByJ[n][i]);
...@@ -2606,13 +2588,13 @@ public class FactorConvKernel { ...@@ -2606,13 +2588,13 @@ public class FactorConvKernel {
this.currentfX); this.currentfX);
this.currentRMSPure= Math.sqrt(rmses[1] / target_kernel.length); this.currentRMSPure= Math.sqrt(rmses[1] / target_kernel.length);
this.currentRMS = Math.sqrt(rmses[0] / currentfX.length); this.currentRMS = Math.sqrt(rmses[0] / currentfX.length);
if (debugLevel > 1){ if (debugLevel > 2){
System.out.println("currentRMSPure= "+ currentRMSPure + " getDiffByDiff[1] = "+Math.sqrt(getDiffByDiff( System.out.println("currentRMSPure= "+ currentRMSPure + " getDiffByDiff[1] = "+Math.sqrt(getDiffByDiff(
this.target_kernel, // target kernel this.target_kernel, // target kernel
this.currentfX)[1] / target_kernel.length)); this.currentfX)[1] / target_kernel.length));
} }
if (this.debugLevel>1) { if (this.debugLevel > 3) {
System.out.println("initial RMS="+IJ.d2s(this.currentRMS,8)+ System.out.println("initial RMS="+IJ.d2s(this.currentRMS,8)+
" ("+IJ.d2s(this.currentRMSPure,8)+")"+ " ("+IJ.d2s(this.currentRMSPure,8)+")"+
// ". Calculating next Jacobian. Points:"+(asym_size*asym_size+target_kernel.length)+" Parameters:"+this.currentVector.length); // ". Calculating next Jacobian. Points:"+(asym_size*asym_size+target_kernel.length)+" Parameters:"+this.currentVector.length);
...@@ -2626,12 +2608,12 @@ public class FactorConvKernel { ...@@ -2626,12 +2608,12 @@ public class FactorConvKernel {
this.currentRMSPure= Math.sqrt(rmses[1] / target_kernel.length); this.currentRMSPure= Math.sqrt(rmses[1] / target_kernel.length);
this.currentRMS = Math.sqrt(rmses[0] / currentfX.length); this.currentRMS = Math.sqrt(rmses[0] / currentfX.length);
if (debugLevel > 2){ if (debugLevel > 3){
System.out.println("this.currentRMS=" + this.currentRMS+ " getDiffByDiff[1] = "+Math.sqrt(getDiffByDiff( System.out.println("this.currentRMS=" + this.currentRMS+ " getDiffByDiff[1] = "+Math.sqrt(getDiffByDiff(
this.target_kernel, // target kernel this.target_kernel, // target kernel
this.currentfX)[1] / target_kernel.length)); this.currentfX)[1] / target_kernel.length));
} }
if (debugLevel > 1) { if (debugLevel > 2) {
System.out.println("Reused existing lMAArrays (after previous failure), lMAArrays.jTByJ[0][0] = "+lMAArrays.jTByJ[0][0]); System.out.println("Reused existing lMAArrays (after previous failure), lMAArrays.jTByJ[0][0] = "+lMAArrays.jTByJ[0][0]);
} }
...@@ -2650,17 +2632,17 @@ public class FactorConvKernel { ...@@ -2650,17 +2632,17 @@ public class FactorConvKernel {
for (int i=0;i<deltas.length;i++) deltas[i]=0.0; for (int i=0;i<deltas.length;i++) deltas[i]=0.0;
matrixNonSingular=false; matrixNonSingular=false;
} }
if (this.debugLevel>2) { if (this.debugLevel > 3) {
System.out.println("--- deltas.1 ---"); System.out.println("--- deltas.1 ---");
for (int i=63;i<deltas.length;i++){ for (int i=63;i<deltas.length;i++){
System.out.println("deltas["+i+"]="+ deltas[i]+" this.currentRMS="+this.currentRMS); System.out.println("deltas["+i+"]="+ deltas[i]+" this.currentRMS="+this.currentRMS);
} }
} }
if (this.debugLevel > 2){ // 2!!! ) { if (this.debugLevel > 3){ // 2!!! ) {
System.out.println("--- deltas ---"+" this.currentRMS="+this.currentRMS); System.out.println("--- deltas ---"+" this.currentRMS="+this.currentRMS);
// for (int i=0; i < deltas.length; i++) if ((debugLevel > 3) || (map_from_pars[i][0]==1)) { // for (int i=0; i < deltas.length; i++) if ((debugLevel > 3) || (map_from_pars[i][0]==1)) {
for (int i=0; i < deltas.length; i++) if ((this.debugLevel > 3) || (i >= 63)) { for (int i=0; i < deltas.length; i++) if ((this.debugLevel > 4) || (i >= 63)) {
System.out.println("deltas["+i+"]="+ deltas[i]); System.out.println("deltas["+i+"]="+ deltas[i]);
} }
} }
...@@ -2677,7 +2659,7 @@ public class FactorConvKernel { ...@@ -2677,7 +2659,7 @@ public class FactorConvKernel {
// another option - do not calculate J now, just fX. and late - calculate both if it was improvement // another option - do not calculate J now, just fX. and late - calculate both if it was improvement
// save current Jacobian // save current Jacobian
if (this.debugLevel > 2) { // change to 2 later if (this.debugLevel > 3) { // change to 2 later
int indx = 0; int indx = 0;
System.out.println("modified Vector"); System.out.println("modified Vector");
for (int i=0;i<this.nextVector.length;i++) if (!Double.isNaN(this.nextVector[i])){ for (int i=0;i<this.nextVector.length;i++) if (!Double.isNaN(this.nextVector[i])){
...@@ -2706,7 +2688,7 @@ public class FactorConvKernel { ...@@ -2706,7 +2688,7 @@ public class FactorConvKernel {
this.nextRMSPure= Math.sqrt(rmses[1] / target_kernel.length); this.nextRMSPure= Math.sqrt(rmses[1] / target_kernel.length);
this.nextRMS = Math.sqrt(rmses[0] / nextfX.length); this.nextRMS = Math.sqrt(rmses[0] / nextfX.length);
if (debugLevel > 2){ if (debugLevel > 3){
System.out.println("nextRMSPure= "+ nextRMSPure + " target_kernel.length = "+target_kernel.length+" getDiffByDiff[1] = "+Math.sqrt(getDiffByDiff( System.out.println("nextRMSPure= "+ nextRMSPure + " target_kernel.length = "+target_kernel.length+" getDiffByDiff[1] = "+Math.sqrt(getDiffByDiff(
this.target_kernel, // target kernel this.target_kernel, // target kernel
this.nextfX)[1] / target_kernel.length)); // current convolution result of async_kernel (*) sync_kernel this.nextfX)[1] / target_kernel.length)); // current convolution result of async_kernel (*) sync_kernel
...@@ -2714,7 +2696,7 @@ public class FactorConvKernel { ...@@ -2714,7 +2696,7 @@ public class FactorConvKernel {
this.lastImprovements[1]=this.lastImprovements[0]; this.lastImprovements[1]=this.lastImprovements[0];
this.lastImprovements[0]=this.currentRMS-this.nextRMS; this.lastImprovements[0]=this.currentRMS-this.nextRMS;
// System.out.println("Setting this.lastImprovements[1]="+this.lastImprovements[1]+" new this.lastImprovements[0]="+this.lastImprovements[0]); // System.out.println("Setting this.lastImprovements[1]="+this.lastImprovements[1]+" new this.lastImprovements[0]="+this.lastImprovements[0]);
if (this.debugLevel>2) { if (this.debugLevel > 3) {
System.out.println("stepLMA this.currentRMS="+this.currentRMS+ System.out.println("stepLMA this.currentRMS="+this.currentRMS+
", this.nextRMS="+this.nextRMS+ ", this.nextRMS="+this.nextRMS+
", delta="+(this.currentRMS-this.nextRMS)); ", delta="+(this.currentRMS-this.nextRMS));
...@@ -2729,7 +2711,7 @@ public class FactorConvKernel { ...@@ -2729,7 +2711,7 @@ public class FactorConvKernel {
status[0]=true; status[0]=true;
status[1]=true; status[1]=true;
this.lastImprovements[0]=0.0; this.lastImprovements[0]=0.0;
if (this.debugLevel>1) { if (this.debugLevel > 2) {
System.out.println("New RMS error is larger than the old one, but the difference is too small to be trusted "); System.out.println("New RMS error is larger than the old one, but the difference is too small to be trusted ");
System.out.println( System.out.println(
"stepLMA this.currentRMS="+this.currentRMS+ "stepLMA this.currentRMS="+this.currentRMS+
...@@ -2752,7 +2734,7 @@ public class FactorConvKernel { ...@@ -2752,7 +2734,7 @@ public class FactorConvKernel {
(this.lastImprovements[1]<this.thresholdFinish*this.currentRMS)); (this.lastImprovements[1]<this.thresholdFinish*this.currentRMS));
if (!status[1] && (this.currentRMSPure < goal_rms_pure)) { if (!status[1] && (this.currentRMSPure < goal_rms_pure)) {
status[1] = true; status[1] = true;
if (this.debugLevel>1) { if (this.debugLevel > 2) {
System.out.println("Improvent is possible, but the factorization precision reached its goal"); System.out.println("Improvent is possible, but the factorization precision reached its goal");
System.out.println( System.out.println(
"stepLMA this.currentRMS="+this.currentRMS+ "stepLMA this.currentRMS="+this.currentRMS+
...@@ -2772,7 +2754,7 @@ public class FactorConvKernel { ...@@ -2772,7 +2754,7 @@ public class FactorConvKernel {
} }
///this.currentRMS ///this.currentRMS
//TODO: add other failures leading to result failure? //TODO: add other failures leading to result failure?
if (this.debugLevel>2) { if (this.debugLevel > 3) {
System.out.println("stepLevenbergMarquardt()=>"+status[0]+","+status[1]); System.out.println("stepLevenbergMarquardt()=>"+status[0]+","+status[1]);
} }
return status; return status;
......
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