Skip to content

I
imagej-elphel
Commit a47aabbe authored by Andrey Filippov's avatar Andrey Filippov
Browse files
Options

Linear output for GRAY32 GEO output, UM for ARGB (slow fillNaNs)

parent 24d7049d
Show whitespace changes
Inline Side-by-side
Showing with 238 additions and 87 deletions
src/main/java/com/elphel/imagej/cameras/CLTParameters.java
View file @ a47aabbe
......@@ -489,7 +489,14 @@ public class CLTParameters {
public boolean gmap_save_alt = true; // save height map (meters ASL)
public boolean gmap_save_tiff32 = true; // save float TIFF (NaN for transparency) with geo metadata (top left corner)
public boolean gmap_save_tiff = true; // save transparent TIFF with geo metadata (top left corner)
public int gmap_tiff_pal = 0; // LWIR palette for TIFF
public int gmap_tiff_pal = 0; // LWIR palette for ARGB TIFF
public boolean gmap_um = true; // Use unsharp mask filter for ARGB TIFF maps
public double gmap_um_sigma = 0.4; // Unsharp mask sigma for ARGB TIFF maps (in meters)
public double gmap_um_weight = 0.8; // Unsharp mask weight for ARGB TIFF maps
public boolean gmap_lwir_autorange = true; // Autorange LWIR textures for ARGB TIFF maps
public boolean gmap_um_fixed = false; // Use fixed range after unsharp mask instead of autorange for ARGB TIFF maps
public double gmap_um_range = 500; // Full range after unsharp mask for ARGB TIFF maps
public boolean generate_bg = true; // Generate background image for 3dmodels
public boolean show_textures = true; // show generated textures
......@@ -1640,6 +1647,13 @@ public class CLTParameters {
properties.setProperty(prefix+"gmap_save_tiff", this.gmap_save_tiff+""); // boolean
properties.setProperty(prefix+"gmap_tiff_pal", this.gmap_tiff_pal+""); // int
properties.setProperty(prefix+"gmap_um", this.gmap_um+""); // boolean
properties.setProperty(prefix+"gmap_um_sigma", this.gmap_um_sigma+""); // double
properties.setProperty(prefix+"gmap_um_weight", this.gmap_um_weight+""); // double
properties.setProperty(prefix+"gmap_lwir_autorange", this.gmap_lwir_autorange+""); // boolean
properties.setProperty(prefix+"gmap_um_fixed", this.gmap_um_fixed+""); // boolean
properties.setProperty(prefix+"gmap_um_range", this.gmap_um_range+""); // double
properties.setProperty(prefix+"generate_bg", this.generate_bg+"");
properties.setProperty(prefix+"show_textures", this.show_textures+"");
properties.setProperty(prefix+"debug_filters", this.debug_filters+"");
......@@ -2664,6 +2678,13 @@ public class CLTParameters {
if (properties.getProperty(prefix+"gmap_save_tiff")!=null) this.gmap_save_tiff=Boolean.parseBoolean(properties.getProperty(prefix+ "gmap_save_tiff"));
if (properties.getProperty(prefix+"gmap_tiff_pal")!=null) this.gmap_tiff_pal=Integer.parseInt(properties.getProperty(prefix+ "gmap_tiff_pal"));// int
if (properties.getProperty(prefix+"gmap_um")!=null) this.gmap_um=Boolean.parseBoolean(properties.getProperty(prefix+"gmap_um"));
if (properties.getProperty(prefix+"gmap_um_sigma")!=null) this.gmap_um_sigma=Double.parseDouble(properties.getProperty(prefix+"gmap_um_sigma"));
if (properties.getProperty(prefix+"gmap_um_weight")!=null) this.gmap_um_weight=Double.parseDouble(properties.getProperty(prefix+"gmap_um_weight"));
if (properties.getProperty(prefix+"gmap_lwir_autorange")!=null) this.gmap_lwir_autorange=Boolean.parseBoolean(properties.getProperty(prefix+"gmap_lwir_autorange"));
if (properties.getProperty(prefix+"gmap_um_fixed")!=null) this.gmap_um_fixed=Boolean.parseBoolean(properties.getProperty(prefix+"gmap_um_fixed"));
if (properties.getProperty(prefix+"gmap_um_range")!=null) this.gmap_um_range=Double.parseDouble(properties.getProperty(prefix+"gmap_um_range"));
if (properties.getProperty(prefix+"generate_bg")!=null) this.generate_bg=Boolean.parseBoolean(properties.getProperty(prefix+"generate_bg"));
if (properties.getProperty(prefix+"show_textures")!=null) this.show_textures=Boolean.parseBoolean(properties.getProperty(prefix+"show_textures"));
if (properties.getProperty(prefix+"debug_filters")!=null) this.debug_filters=Boolean.parseBoolean(properties.getProperty(prefix+"debug_filters"));
......@@ -3939,9 +3960,25 @@ public class CLTParameters {
"Save float (32-bit) TIFF with geo and resolution metadata (coordinates correspond to the top left image corner), NAN for transparency.");
gd.addCheckbox ("Save ARGB Tiff with transparency and Geo",this.gmap_save_tiff, // true; // enable change FG pixel to opaque from transparent
"Save transparent TIFF with geo and resolution metadata (coordinates correspond to the top left image corner).");
gd.addNumericField("Crop maps extra", this.gmap_tiff_pal, 0,3,"", // minimal neighbors to keep alpha
gd.addNumericField("LWIR palette for Geo", this.gmap_tiff_pal, 0,3,"", // minimal neighbors to keep alpha
"LWIR palette for Geo/transparency TIFF output.");
gd.addMessage ("Unsharp mask parameters for ARGB render of the ground maps");
gd.addCheckbox ("Apply unsharp mask to ARGB render", this.gmap_um,
"Use unsharp mask filter for texture.");
gd.addNumericField("Unsharp mask sigma", this.gmap_um_sigma, 5,7,"m",
"Unsharp mask sigma for ARGB ground map render in meters.");
gd.addNumericField("Unsharp mask weight", this.gmap_um_weight, 5,7,"",
"Unsharp mask weight for ARGB ground map render.");
gd.addCheckbox ("Autorange LWIR textures", this.gmap_lwir_autorange,
"Autorange LWIR ARGB ground map render (after unsharp mask).");
gd.addCheckbox ("Fixed range (after unsharp only)", this.gmap_um_fixed,
"Use fixed range after unsharp mask for ARGB ground map instead of autorange.");
gd.addNumericField("Full range for ARGB ground map render",this.gmap_um_range, 5,7,"counts",
"Full range after unsharp mask when fixed range is selected.");
gd.addMessage ("Earlier 3D generation parameters");
gd.addCheckbox ("Generate background (infinity) image for 3D (not needed for view down)", this.generate_bg);
gd.addCheckbox ("Show generated textures", this.show_textures);
......@@ -5163,6 +5200,13 @@ public class CLTParameters {
this.gmap_save_tiff= gd.getNextBoolean();
this.gmap_tiff_pal= (int) gd.getNextNumber();
this.gmap_um = gd.getNextBoolean();
this.gmap_um_sigma = gd.getNextNumber();
this.gmap_um_weight = gd.getNextNumber();
this.gmap_lwir_autorange = gd.getNextBoolean();
this.gmap_um_fixed = gd.getNextBoolean();
this.gmap_um_range = gd.getNextNumber();
this.generate_bg= gd.getNextBoolean();
this.show_textures= gd.getNextBoolean();
this.debug_filters= gd.getNextBoolean();
......
src/main/java/com/elphel/imagej/readers/ElphelTiffWriter.java
View file @ a47aabbe
......@@ -194,13 +194,13 @@ public class ElphelTiffWriter {
int bands = 1; // 4 bands for ARGB, 3 for RGB etc
int[] bandOffsets = {0}; // length == bands, 0 == R, 1 == G, 2 == B and 3 == A
// Create a TYPE_FLOAT sample model (specifying how the pixels are stored)
SampleModel sampleModel0 = new PixelInterleavedSampleModel(
DataBuffer.TYPE_FLOAT,
width,
height,
bands,
width * bands,
bandOffsets);
// SampleModel sampleModel0 = new PixelInterleavedSampleModel(
// DataBuffer.TYPE_FLOAT,
// width,
// height,
// bands,
// width * bands,
// bandOffsets);
// Create a color model compatible with this sample model/raster (TYPE_FLOAT)
// Note that the number of bands must equal the number of color components in the
......
src/main/java/com/elphel/imagej/tileprocessor/QuadCLTCPU.java
View file @ a47aabbe
......@@ -8668,7 +8668,7 @@ public class QuadCLTCPU {
double [][][] textures // [nslices][nchn][i]
) {
if ((textures == null) || (textures.length==0)) {
throw new IllegalArgumentException ("umTextures(): Empty textures");
throw new IllegalArgumentException ("getMinMaxTextures(): Empty textures");
}
final boolean is_mono = textures[0].length <= 2;
final int alpha_chn = is_mono? 1 : 3;
......@@ -16456,6 +16456,52 @@ public class QuadCLTCPU {
return true;
}
// Currently only a single-slice 32-bit file (with NaN for tranparency)
public boolean writeLwirGeoTiff32(
final CLTParameters clt_parameters,
double [] data,
double [] lla, // latitude, longitude, altitude (or null)
LocalDateTime dt, // local date/time or null
double pix_in_meters,
int width,
QuadCLT scene,
String suffix, // include "-geo"
int debugLevel) {
if (scene == null) {
scene = (QuadCLT) this;
}
int height = data.length/width;
String set_name = getImageName();
if (set_name == null ) {
QuadCLTCPU.SetChannels [] set_channels = setChannels(debugLevel);
set_name = set_channels[0].set_name;
}
String model_dir= correctionsParameters.selectX3dDirectory(
set_name, // quad timestamp. Will be ignored if correctionsParameters.use_x3d_subdirs is false
null,
true, // smart,
true); //newAllowed, // save\
String title = getImageName()+suffix;
ImagePlus imp = ShowDoubleFloatArrays.makeArrays(
data, // double[] pixels,
width, // int width,
height, // int height,
title); // String title);
String image_path = model_dir + Prefs.getFileSeparator() + title+".tiff";
ElphelTiffWriter.saveTiffARGBOrGray32(
imp,
image_path,
lla, // double [] lla, // latitude, longitude, altitude (or null)
dt, // LocalDateTime dt, // local date/time or null
pix_in_meters, //double pix_in_meters, // resolution or Double.NaN
false, // imageJTags,
debugLevel);
return true;
}
/** broke
public boolean writeRatingFile( // USED in lwir
......
src/main/java/com/elphel/imagej/tileprocessor/TexturedModel.java
View file @ a47aabbe
......@@ -2471,9 +2471,15 @@ public class TexturedModel {
final int crop_extra = clt_parameters.gmap_crop_extra ; //20;
final int [] tex_pals = clt_parameters.gmap_tex_pals ; //{0,1,2};
final boolean gmap_save_alt = clt_parameters.gmap_save_alt; // true; // save height map (meters ASL)
final boolean gmap_save_tiff32= clt_parameters.gmap_save_tiff32; // save float TIFF (NaN for transparency) with geo metadata (top left corner)
final boolean gmap_save_tiff = clt_parameters.gmap_save_tiff; // true; // save transparent TIFF with geo metadata (top left corner)
final int gmap_tiff_pal = clt_parameters.gmap_tiff_pal; // 0; // LWIR palette for TIFF
final boolean gmap_um = clt_parameters.gmap_um; // true; // Use unsharp mask filter for ARGB TIFF maps
final double gmap_um_sigma = clt_parameters.gmap_um_sigma; // 0.4; // Unsharp mask sigma for ARGB TIFF maps (in meters)
final double gmap_um_weight = clt_parameters.gmap_um_weight; // 0.8; // Unsharp mask weight for ARGB TIFF maps
final boolean gmap_lwir_autorange = clt_parameters.gmap_lwir_autorange;// true; // Autorange LWIR textures for ARGB TIFF maps
final boolean gmap_um_fixed = clt_parameters.gmap_um_fixed; // false; // Use fixed range after unsharp mask instead of autorange for ARGB TIFF maps
final double gmap_um_range = clt_parameters.gmap_um_range; // 500; // Full range after unsharp mask for ARGB TIFF maps
final double range_disparity_offset = clt_parameters.imp.range_disparity_offset;// double range_disparity_offset
final boolean batch_mode = clt_parameters.multiseq_run; // batch_run;
......@@ -3068,9 +3074,6 @@ public class TexturedModel {
}
// String model_name = ref_scene.correctionsParameters.getModelName(ref_scene.getImageName());
String suffix ="-RECT";
if (clt_parameters.tex_um) {
suffix+="-UM"+(clt_parameters.tex_um_sigma)+"_"+(clt_parameters.tex_um_weight);
}
suffix +="-PIX"+pix_size * hdr_whs[2];
scenes[ref_index].saveDoubleArrayInModelDirectory(
suffix+"-FULL", // String suffix,
......@@ -3136,18 +3139,75 @@ public class TexturedModel {
}
}
double avg_z = sum_z/num_pix;
LocalDateTime dt = scenes[ref_index].getLocalDateTime();
top_left_lla[2] = avg_z; // average altitude. Maybe keep drone altitude?
if (gmap_save_alt) {
/*
scenes[ref_index].saveDoubleArrayInTopModelDirectory( // save with Z
suffix+"-ALT", // String suffix,
null, // String [] labels, // or null
new double[][] {cropped_z[0]}, // double [][] data,
hdr_whs[0], // int width, // int tilesX,
hdr_whs[1]); // int height, // int tilesY,
*/
scenes[ref_index].writeLwirGeoTiff32(
clt_parameters, // final CLTParameters clt_parameters,
cropped_z[0], // double [] data,
top_left_lla, // double [] lla, // latitude, longitude, altitude (or null)
dt, // LocalDateTime dt, // local date/time or null
scaled_pixel_size, // double pix_in_meters,
hdr_whs[0], // int width,
null, // QuadCLT scene,
suffix+"-GEO-ALT", // String suffix,
debugLevel); // int debugLevel)
}
double [] minmax = tex_um_fixed ? (new double[] {-tex_um_range/2, tex_um_range/2}): null;
if (gmap_save_tiff32) {
scenes[ref_index].writeLwirGeoTiff32(
clt_parameters, // final CLTParameters clt_parameters,
img_cropped[0], // double [] data,
top_left_lla, // double [] lla, // latitude, longitude, altitude (or null)
dt, // LocalDateTime dt, // local date/time or null
scaled_pixel_size, // double pix_in_meters,
hdr_whs[0], // int width,
null, // QuadCLT scene,
suffix+"-GEO", // String suffix,
debugLevel); // int debugLevel)
}
if ((gmap_save_tiff && (gmap_tiff_pal >=0)) || (tex_pals.length > 0)) {
// TODO: Move UM here, save 32-bit GEO w/o UM
if (gmap_um) {
double um_sigma = gmap_um_sigma / scaled_pixel_size;
int grow_pix = (int) (4 * um_sigma); // experimentally - UM grows by 4*sigma;
// it is needed before Gaussian blur which extends NaN
double [] um_data = TileProcessor.fillNaNs(
img_cropped[0], // final double [] data,
null, // final boolean [] prohibit,
hdr_whs[0], // int width,
// CAREFUL ! Remaining NaN is grown by unsharp mask filter ************* !
2*grow_pix, // 2*width, // 16, // final int grow,
0.7, // double diagonal_weight, // relative to ortho
100, // int num_passes,
0.03, // final double max_rchange, // = 0.01 - does not need to be accurate
THREADS_MAX); // final int threadsMax) // maximal number of threads to launch
double [][][] um_data3 = {{um_data}};
QuadCLTCPU.umTextures(
um_data3, // final double [][][] textures, // [nslices][nchn][i]
hdr_whs[0], // tilesX * transform_size, // final int width,
false, // um_ignore_alpha, // final boolean ignore_alpha,
um_sigma, // final double um_sigma,
gmap_um_weight); // final double um_weight)
for (int i = 0; i < um_data.length; i++) {
if (Double.isNaN(img_cropped[0][i])) {
um_data[i] = Double.NaN;
}
}
img_cropped[0] = um_data; // replaced with UM
suffix+="-UM"+(clt_parameters.tex_um_sigma)+"_"+(clt_parameters.tex_um_weight);
}
double [] minmax = gmap_um_fixed ? (new double[] {-gmap_um_range/2, gmap_um_range/2}): null;
if (gmap_save_tiff && (gmap_tiff_pal >=0)) {
LocalDateTime dt = scenes[ref_index].getLocalDateTime();
scenes[ref_index].writeLwirGeoTiffARGB(
clt_parameters, // final CLTParameters clt_parameters,
img_cropped[0], // double [] data,
......@@ -3164,7 +3224,7 @@ public class TexturedModel {
for (int tex_palette: tex_pals) {
// try with fixed range?
// double [] minmax = tex_um_fixed ? (new double[] {-tex_um_range/2, tex_um_range/2}): null;
// double [] minmax = tex_um_fixed ? (new double[] {-tex_um_range/2, tex_um_range/2}): null;
scenes[ref_index].writeLwirPreview(
clt_parameters, // final CLTParameters clt_parameters,
img_cropped[0], // double [] data,
......@@ -3176,6 +3236,7 @@ public class TexturedModel {
debugLevel); // int debugLevel)
}
}
}
}
}
......@@ -7593,18 +7654,7 @@ public class TexturedModel {
tilesX * transform_size, // int width, // int tilesX,
tilesY * transform_size); // int height, // int tilesY,
}
// Optionally apply UM (before auto/manual range)
final boolean um_ignore_alpha = true;
final boolean hist_ignore_alpha = true;
if (tex_um) {
QuadCLTCPU.umTextures(
faded_textures, // final double [][][] textures, // [nslices][nchn][i]
tilesX * transform_size, // final int width,
um_ignore_alpha, // final boolean ignore_alpha,
tex_um_sigma, // final double um_sigma,
tex_um_weight); // final double um_weight)
}
// save linear textures before applying UM
if (lin_textures != null) {
// duplicate texture before normalization
lin_textures[0] = new double [faded_textures.length][][];
......@@ -7619,6 +7669,17 @@ public class TexturedModel {
}
}
}
// Optionally apply UM (before auto/manual range)
final boolean um_ignore_alpha = true;
final boolean hist_ignore_alpha = true;
if (tex_um) {
QuadCLTCPU.umTextures(
faded_textures, // final double [][][] textures, // [nslices][nchn][i]
tilesX * transform_size, // final int width,
um_ignore_alpha, // final boolean ignore_alpha,
tex_um_sigma, // final double um_sigma,
tex_um_weight); // final double um_weight)
}
if (save_interm_textures || save_um_texture0) {
double [][] dbg_textures = new double [faded_textures.length * faded_textures[0].length][faded_textures[0][0].length];
String [] dbg_titles = new String[dbg_textures.length];
......@@ -7759,15 +7820,15 @@ public class TexturedModel {
dbg_titles[i] = dbg_subtitles[i % dbg_subtitles.length] + "-" + (i / dbg_subtitles.length);
}
if (save_preview) {
// final boolean tex_um_fixed = clt_parameters.tex_um_fixed; // imp.mono_fixed; // true; // normalize to fixed range when converting to 8 bits
// final double tex_um_range = clt_parameters.tex_um_range; // imp.mono_range; // 500.0; // monochrome full-scale range (+/- half)
// final boolean tex_um_fixed = clt_parameters.tex_um_fixed; // imp.mono_fixed; // true; // normalize to fixed range when converting to 8 bits
// final double tex_um_range = clt_parameters.tex_um_range; // imp.mono_range; // 500.0; // monochrome full-scale range (+/- half)
double [] minmax = tex_um_fixed ? (new double[] {-tex_um_range/2, tex_um_range/2}): null;
/*
ref_scene.writePreview( // may move to different (earlier) stage of processing, (search for "-combined_textures")
dbg_textures[0], // double [] data,
debugLevel); // int debugLevel
*/
// Trying different palettes
// Trying different palettes
int tex_palette = 0; // regular mono white-hot
ref_scene.writeLwirPreview(
clt_parameters, // final CLTParameters clt_parameters,
......
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment