snapshot before interruption for proposals

src/main/java/com/elphel/imagej/orthomosaic/ComboMatch.java

@@ -987,6 +987,10 @@ public class ComboMatch {
 					double      fill_fraction =       clt_parameters.imp.pmtch_cent_fill;   // should be populated not less than this
 					double      fill_fraction_final = clt_parameters.imp.pmtch_cent_final;  // should be populated not less than this during final pass
 					double      ease_nosfm =          clt_parameters.imp.pmtch_ease_nosfm;  // ease metric_error when no SfM gain == 0;
+					double      pull_skew =           clt_parameters.imp.pmtch_pull_skew;        // ~rotation, = 0 fraction of the total weight == 1
+					double      pull_tilt =           clt_parameters.imp.pmtch_pull_tilt;     // > 0
+					double      pull_scale =          clt_parameters.imp.pmtch_pull_scale;       // = 0
+
         			for (int zi = 0; zi < zooms.length; zi++) {
         				zoom_lev = zooms[zi];
         				if (zoom_lev >=1000) {
@@ -998,6 +1002,7 @@ public class ComboMatch {
         				}
         				// will modify affines[1], later add jtj, weight, smth. else?
         				PairwiseOrthoMatch pmatch = process_correlation? pairwiseOrthoMatch: null;
+        				
         				FineXYCorr warp = maps_collection.correlateOrthoPair(
         						clt_parameters,  // CLTParameters    clt_parameters,
         						(process_correlation? pairwiseOrthoMatch: null), //PairwiseOrthoMatch pairwiseOrthoMatch, // will return statistics
@@ -1022,6 +1027,9 @@ public class ComboMatch {
         						fill_fraction_final, // double           fill_fraction_final,
         						ease_nosfm,      // double           ease_nosfm,
         						null,            // double []        max_rms_iter, //  = {1.0, 0.6};//
+        						pull_skew,       // double           pull_skew,        // ~rotation, = 0 fraction of the total weight == 1
+        						pull_tilt,       // double           pull_tilt,        // > 0
+        						pull_scale,      // double           pull_scale,       // = 0
         						debugLevel);     // final int        debugLevel)
         				if ((warp == null) || ((pmatch != null) &&  Double.isNaN(pmatch.rms))) {
         					System.out.println("Failed correlateOrthoPair()");
@@ -1153,6 +1161,9 @@ public class ComboMatch {
 		double      fill_fraction =       clt_parameters.imp.pmtch_cent_fill; // should be populated not less than this
 		double      fill_fraction_final = clt_parameters.imp.pmtch_cent_final; // should be populated not less than this during final pass
 		double      ease_nosfm =          clt_parameters.imp.pmtch_ease_nosfm; // ease metric_error when no SfM gain == 0;
+		double      pull_skew =           clt_parameters.imp.pmtch_pull_skew;        // ~rotation, = 0 fraction of the total weight == 1
+		double      pull_tilt =           clt_parameters.imp.pmtch_pull_tilt;     // > 0
+		double      pull_scale =          clt_parameters.imp.pmtch_pull_scale;       // = 0
 		
 		GenericJTabbedDialog gd = new GenericJTabbedDialog("Setup Spiral Match",1200,350);
 		if (pairwiseOrthoMatch != null) {
@@ -1185,6 +1196,9 @@ public class ComboMatch {
 		gd.addNumericField("Central area minimal fill",        fill_fraction,  3,7,"",	"Central area minimal fill for all but the last iteration.");
 		gd.addNumericField("Central area minimal fill final",  fill_fraction_final, 3,7,"",	"Central area minimal fill for the last iteration.");
 		gd.addNumericField("Relax metric error for no-SfM",    ease_nosfm, 3,7,"",	"Relax metric error for no-SfM scenes (sfm_gain==0).");
+		gd.addNumericField("Pull skew (rotation)",             pull_skew, 3,7,"",	"Prevent pairwise match from rotation.");
+		gd.addNumericField("Pull tilt",                        pull_tilt, 3,7,"",	"Prevent pairwise match from tilt.");
+		gd.addNumericField("Pull scale",                       pull_scale, 3,7,"",	"Prevent pairwise match from scaling.");
 		
 		
 		gd.showDialog();
@@ -1214,6 +1228,9 @@ public class ComboMatch {
 		fill_fraction=             gd.getNextNumber();
 		fill_fraction_final=       gd.getNextNumber();
 		ease_nosfm=                gd.getNextNumber();
+		pull_skew =                gd.getNextNumber();
+		pull_tilt =                gd.getNextNumber();
+		pull_scale =               gd.getNextNumber();
 		
 		if (use_existing_pair) {
 			if (invert_exixting_pair) {
@@ -1254,6 +1271,9 @@ public class ComboMatch {
 				ignore_rms,      // boolean          ignore_rms,
 				null,//double []        max_rms_iter, //  = {1.0, 0.6};//
 				1.0, // double           overlap,
+				pull_skew,        // double           pull_skew,        // ~rotation, = 0 fraction of the total weight == 1
+				pull_tilt,        // double           pull_tilt,        // > 0
+				pull_scale,       // double           pull_scale,       // = 0
 				spiral_debug);     // int              debugLevel){
 		if (log_append && (log_path != null)) { // assuming directory exists
 			StringBuffer sb = new StringBuffer();

src/main/java/com/elphel/imagej/tileprocessor/IntersceneMatchParameters.java

@@ -120,6 +120,10 @@ public class IntersceneMatchParameters {
 	public boolean  pmtch_ignore_rms =  true; 
 	public int      pmtch_num_iter =   10;
     
+	public double   pmtch_pull_skew =   0.0;     // ~rotation, = 0 fraction of the total weight == 1
+	public double   pmtch_pull_tilt =   0.1;     // > 0
+	public double   pmtch_pull_scale =  0.0;     // = 0
+	
 	public double   pmtch_cent_rad =    0.6;     // center circle radius fraction of 0.5* min(width, height) in tiles
 	public double   pmtch_max_cent_rad =40;      //  30; // maximal center radius in tiles (limit pmtch_cent_rad)
 	public double   pmtch_cent_fill =   0.2;     // 25; // should be populated not less than this
@@ -782,6 +786,11 @@ public class IntersceneMatchParameters {
 		gd.addNumericField("Central area minimal radius",      this.pmtch_min_std_rad,  3,7,"tile",	"Minimal radius of the central area after all LMA passes.");
 		gd.addCheckbox    ("Ignore previous RMSE",             this.pmtch_ignore_rms, "Do not exit full fitting cycles if the RMSE worsened/not improved.");
 		gd.addNumericField("Number of fitting iterations",     this.pmtch_num_iter, 0,3,"","number of full fittng iterations.");
+		
+		gd.addNumericField("Pull skew (rotation)",             this.pmtch_pull_skew, 3,7,"",	"Prevent pairwise match from rotation.");
+		gd.addNumericField("Pull tilt",                        this.pmtch_pull_tilt, 3,7,"",	"Prevent pairwise match from tilt.");
+		gd.addNumericField("Pull scale",                       this.pmtch_pull_scale, 3,7,"",	"Prevent pairwise match from scaling.");
+		
 		gd.addNumericField("Central area radius as fraction",  this.pmtch_cent_rad,   3,7,"",	"Central area radius as fraction of half minimal WOI dimension.");
 		gd.addNumericField("Maximal central area radius",      this.pmtch_max_cent_rad,   3,7,"tiles",	"Absolute limit to the center area radius (eases bad peripheral matching).");
 		gd.addNumericField("Central area minimal fill",        this.pmtch_cent_fill,  3,7,"",	"Central area minimal fill for all but the last iteration.");
@@ -1701,6 +1710,11 @@ public class IntersceneMatchParameters {
 		this.pmtch_min_std_rad  =             gd.getNextNumber();
 		this.pmtch_ignore_rms   =             gd.getNextBoolean();
 		this.pmtch_num_iter     =       (int) gd.getNextNumber();
+		
+		this.pmtch_pull_skew =                gd.getNextNumber();
+		this.pmtch_pull_tilt =                gd.getNextNumber();
+		this.pmtch_pull_scale =               gd.getNextNumber();
+		
 		this.pmtch_cent_rad   =               gd.getNextNumber();
 		this.pmtch_max_cent_rad   =           gd.getNextNumber();
 		this.pmtch_cent_fill   =              gd.getNextNumber();
@@ -2229,6 +2243,11 @@ public class IntersceneMatchParameters {
 		properties.setProperty(prefix+"pmtch_min_std_rad",             this.pmtch_min_std_rad +"");            // double
 		properties.setProperty(prefix+"pmtch_ignore_rms",              this.pmtch_ignore_rms +"");             // boolean
 		properties.setProperty(prefix+"pmtch_num_iter",                this.pmtch_num_iter +"");               // int
+		
+		properties.setProperty(prefix+"pmtch_pull_skew",               this.pmtch_pull_skew +   "");           // double
+		properties.setProperty(prefix+"pmtch_pull_tilt",               this.pmtch_pull_tilt +   "");           // double
+		properties.setProperty(prefix+"pmtch_pull_scale",              this.pmtch_pull_scale +   "");          // double
+
 		properties.setProperty(prefix+"pmtch_cent_rad",                this.pmtch_cent_rad +   "");            // double
 		properties.setProperty(prefix+"pmtch_max_cent_rad",            this.pmtch_max_cent_rad +   "");        // double
 		properties.setProperty(prefix+"pmtch_cent_fill",               this.pmtch_cent_fill +  "");            // double
@@ -2723,6 +2742,11 @@ public class IntersceneMatchParameters {
 		if (properties.getProperty(prefix+"pmtch_min_std_rad")!=null)  this.pmtch_min_std_rad=Double.parseDouble(properties.getProperty(prefix+  "pmtch_min_std_rad"));
 		if (properties.getProperty(prefix+"pmtch_ignore_rms")!=null)   this.pmtch_ignore_rms= Boolean.parseBoolean(properties.getProperty(prefix+"pmtch_ignore_rms"));		
 		if (properties.getProperty(prefix+"pmtch_num_iter")!=null)     this.pmtch_num_iter=   Integer.parseInt(properties.getProperty(prefix+    "pmtch_num_iter"));
+		
+		if (properties.getProperty(prefix+"pmtch_pull_skew")!=null)    this.pmtch_pull_skew=  Double.parseDouble(properties.getProperty(prefix+  "pmtch_pull_skew"));
+		if (properties.getProperty(prefix+"pmtch_pull_tilt")!=null)    this.pmtch_pull_tilt=  Double.parseDouble(properties.getProperty(prefix+  "pmtch_pull_tilt"));
+		if (properties.getProperty(prefix+"pmtch_pull_scale")!=null)   this.pmtch_pull_scale= Double.parseDouble(properties.getProperty(prefix+  "pmtch_pull_scale"));
+		
 		if (properties.getProperty(prefix+"pmtch_cent_rad"   )!=null)  this.pmtch_cent_rad=   Double.parseDouble(properties.getProperty(prefix+  "pmtch_cent_rad"));
 		if (properties.getProperty(prefix+"pmtch_max_cent_rad")!=null) this.pmtch_max_cent_rad=Double.parseDouble(properties.getProperty(prefix+  "pmtch_max_cent_rad"));
 		if (properties.getProperty(prefix+"pmtch_cent_fill"  )!=null)  this.pmtch_cent_fill=  Double.parseDouble(properties.getProperty(prefix+  "pmtch_cent_fill"));
@@ -3243,6 +3267,9 @@ public class IntersceneMatchParameters {
 		imp.pmtch_min_std_rad             = this.pmtch_min_std_rad;
 		imp.pmtch_ignore_rms              = this.pmtch_ignore_rms;
 		imp.pmtch_num_iter                = this.pmtch_num_iter;
+		imp.pmtch_pull_skew               = this.pmtch_pull_skew;
+		imp.pmtch_pull_tilt               = this.pmtch_pull_tilt;
+		imp.pmtch_pull_scale              = this.pmtch_pull_scale;
 		imp.pmtch_cent_rad                = this.pmtch_cent_rad;
 		imp.pmtch_max_cent_rad            = this.pmtch_max_cent_rad;
 		imp.pmtch_cent_fill               = this.pmtch_cent_fill;