before vegetation_lpf modification (6a053711) · Commits · Elphel / imagej-elphel

src/main/java/com/elphel/imagej/tileprocessor/IntersceneMatchParameters.java

+93 −5

Original line number	Original line	Diff line number	Diff line
	@@ -803,7 +803,8 @@ min_str_neib_fpn 0.35

	public double terr_alpha_loss = 100.0;		public double terr_alpha_loss = 100.0;
	public double terr_alpha_loss_lin = 0.0;		public double terr_alpha_loss_lin = 0.0;
	public double terr_alpha_offset = 0.1;		public double terr_alpha_offset = 0.1; // alpha offset near alpha ~=1.0
			public double terr_alpha_0offset = 0.0; // New - a separate alpha offset nea alpha ~= 0.0
	public double terr_alpha_min_veg = -1; // old version 0.5; // Minimal vegetation alpha. If (alpha-alpha_offset)/(1-2*alpha_offset) < alpha_min_veg, pull down to lpha_offset		public double terr_alpha_min_veg = -1; // old version 0.5; // Minimal vegetation alpha. If (alpha-alpha_offset)/(1-2*alpha_offset) < alpha_min_veg, pull down to lpha_offset


	@@ -829,6 +830,22 @@ min_str_neib_fpn 0.35
	public double terr_elev_alpha_pwr = 2.0; // raise alpha to this power (when alpha > 0)		public double terr_elev_alpha_pwr = 2.0; // raise alpha to this power (when alpha > 0)
	public double terr_low_veget = 2.0; // (pix) Elevation considered low (lower loss for high alpha)		public double terr_low_veget = 2.0; // (pix) Elevation considered low (lower loss for high alpha)
	public double terr_scenes_pull0 = 1.0; // pull average scene offset to zero		public double terr_scenes_pull0 = 1.0; // pull average scene offset to zero
			// scaling elevation losses for high elevations (decrease pull and/or lpf for high elevations)
			public double terr_elev_scale_thresh = 1.0; // reduce losses for higher (initial) elevations TODO: consider actual elevations
			public boolean terr_elev_scale_pull = false; // scale elevation pull losses for high elevations
			public boolean terr_elev_scale_lpf = false; // scale elevation diffusion losses for high elevations
			// tree-top removal
			public boolean terr_ttop_en = false; // remove tree tops from transparency weights
			public double terr_ttop_gb = 1.0; // Elevation Gaussian blur sigma to detect tree tops
			public double terr_ttop_min = 3.0; // Minimal tree top elevation
			public double terr_ttop_rel_lev = 0.9; // Relative (to the top height) sample level
			public double terr_ttop_rel_rad = 0.25; // Relative (to the top height) sample ring radius
			public double terr_ttop_frac = 0.5; // Minimal fraction of the ring pixels below sample level
			public double terr_ttop_rem_rad = 0.25; // Relative (to the top height) remove transparency radius





	// LMA parameters		// LMA parameters
	public double terr_boost_parallax = 3.0; //		public double terr_boost_parallax = 3.0; //
	@@ -2134,7 +2151,8 @@ min_str_neib_fpn 0.35
	gd.addNumericField("Alpha loss", terr_alpha_loss, 5,7,"", "Alpha quadratic growing loss for when out of [0,1] range");		gd.addNumericField("Alpha loss", terr_alpha_loss, 5,7,"", "Alpha quadratic growing loss for when out of [0,1] range");
	gd.addNumericField("Alpha loss linear", terr_alpha_loss_lin, 5,7,"", "Alpha linear growing loss for when out of [0,1] range and below minimal vegetation alpha.");		gd.addNumericField("Alpha loss linear", terr_alpha_loss_lin, 5,7,"", "Alpha linear growing loss for when out of [0,1] range and below minimal vegetation alpha.");

	gd.addNumericField("Alpha offset", terr_alpha_offset, 5,7,"", "Start alpha losses above 0.0 and below 1.0 by this value.");		gd.addNumericField("Alpha offset @1.0", terr_alpha_offset, 5,7,"", "Start alpha losses below 1.0 by this value.");
			gd.addNumericField("Alpha offset @0.0", terr_alpha_0offset, 5,7,"", "Start alpha losses above 0.0 by this value.");
	gd.addNumericField("Minimal vegetation alpha", terr_alpha_min_veg, 5,7,"","Minimal vegetation alpha. If (alpha-alpha_offset)/(1-2*alpha_offset) < alpha_min_veg, pull down to lpha_offset.");		gd.addNumericField("Minimal vegetation alpha", terr_alpha_min_veg, 5,7,"","Minimal vegetation alpha. If (alpha-alpha_offset)/(1-2*alpha_offset) < alpha_min_veg, pull down to lpha_offset.");

	gd.addNumericField("Alpha diffusion", terr_alpha_lpf, 5,7,"", "Alpha diffusion to 4 ortho neighbors.");		gd.addNumericField("Alpha diffusion", terr_alpha_lpf, 5,7,"", "Alpha diffusion to 4 ortho neighbors.");
	@@ -2159,9 +2177,23 @@ min_str_neib_fpn 0.35
	gd.addNumericField("Low vegetation loss", terr_elev_alpha, 5,7,"", "Multiply alpha by under-low elevation for loss.");		gd.addNumericField("Low vegetation loss", terr_elev_alpha, 5,7,"", "Multiply alpha by under-low elevation for loss.");
	gd.addNumericField("Low vegetation power", terr_elev_alpha_pwr, 5,7,"", "Raise alpha to this power for low vegetation loss.");		gd.addNumericField("Low vegetation power", terr_elev_alpha_pwr, 5,7,"", "Raise alpha to this power for low vegetation loss.");
	gd.addNumericField("Low elevation", terr_low_veget, 5,7,"pix", "Elevation considered low (lower loss for high alpha.");		gd.addNumericField("Low elevation", terr_low_veget, 5,7,"pix", "Elevation considered low (lower loss for high alpha.");

	gd.addNumericField("Pull scene offset", terr_scenes_pull0, 5,7,"", "Pull average scene offset to zero.");		gd.addNumericField("Pull scene offset", terr_scenes_pull0, 5,7,"", "Pull average scene offset to zero.");

			// scaling elevation losses for high elevations (decrease pull and/or lpf for high elevations)
			gd.addNumericField("High elevation", terr_elev_scale_thresh, 5,7,"","Reduce losses for higher (initial) elevations threshold.");
			gd.addCheckbox ("High elevation pull", terr_elev_scale_pull, "Scale elevation pull losses for high elevations.");
			gd.addCheckbox ("High elevation diffusion",terr_elev_scale_lpf, "Scale elevation diffusion losses for high elevations.");

			gd.addMessage ("Tree tops detection/filtering - no (stray) transparency around tree tops");
			gd.addCheckbox ("Filter tree tops", terr_ttop_en, "Filter tree tops transparency.");
			gd.addNumericField("Elevation blur sigma", terr_ttop_gb, 5,7,"", "Elevation Gaussian blur sigma to detect tree tops.");
			gd.addNumericField("Minimal tree top elevation",terr_ttop_min, 5,7,"", "Minimal tree top elevation.");
			gd.addNumericField("Relative sample level",terr_ttop_rel_lev, 5,7,"", "Relative (to the top height) sample level.");
			gd.addNumericField("Relative ring radius", terr_ttop_rel_rad, 5,7,"", "Relative (to the top height) sample ring radius.");
			gd.addNumericField("Minimal fraction lower",terr_ttop_frac, 5,7,"", "Minimal fraction of the ring pixels below sample level.");
			gd.addNumericField("Remove transparency radius", terr_ttop_rem_rad, 5,7,"","Relative (to the top height) remove transparency radius.");


	gd.addMessage ("LMA parameters");		gd.addMessage ("LMA parameters");
	gd.addNumericField("Boost parallax", terr_boost_parallax, 5,7,"", "Increase weight of scenes that have high parallax to the reference one.");		gd.addNumericField("Boost parallax", terr_boost_parallax, 5,7,"", "Increase weight of scenes that have high parallax to the reference one.");
	gd.addNumericField("Limit parallax", terr_max_parallax, 5,7,"", "Parallax limit when evaluating boost parallax.");		gd.addNumericField("Limit parallax", terr_max_parallax, 5,7,"", "Parallax limit when evaluating boost parallax.");
	@@ -2899,6 +2931,7 @@ min_str_neib_fpn 0.35
	terr_alpha_loss = gd.getNextNumber();// double		terr_alpha_loss = gd.getNextNumber();// double
	terr_alpha_loss_lin = gd.getNextNumber();// double		terr_alpha_loss_lin = gd.getNextNumber();// double
	terr_alpha_offset = gd.getNextNumber();// double		terr_alpha_offset = gd.getNextNumber();// double
			terr_alpha_0offset = gd.getNextNumber();// double
	terr_alpha_min_veg = gd.getNextNumber();// double		terr_alpha_min_veg = gd.getNextNumber();// double
	terr_alpha_lpf = gd.getNextNumber();// double		terr_alpha_lpf = gd.getNextNumber();// double
	terr_alpha_piece_linear = gd.getNextBoolean();// boolean		terr_alpha_piece_linear = gd.getNextBoolean();// boolean
	@@ -2923,6 +2956,20 @@ min_str_neib_fpn 0.35
	terr_elev_alpha_pwr = gd.getNextNumber();// double		terr_elev_alpha_pwr = gd.getNextNumber();// double
	terr_low_veget = gd.getNextNumber();// double		terr_low_veget = gd.getNextNumber();// double
	terr_scenes_pull0 = gd.getNextNumber();// double		terr_scenes_pull0 = gd.getNextNumber();// double

			// scaling elevation losses for high elevations (decrease pull and/or lpf for high elevations)
			terr_elev_scale_thresh = gd.getNextNumber();// double
			terr_elev_scale_pull = gd.getNextBoolean();// boolean
			terr_elev_scale_lpf = gd.getNextBoolean();// boolean
			// tree-top removal
			terr_ttop_en = gd.getNextBoolean();// boolean
			terr_ttop_gb = gd.getNextNumber();// double
			terr_ttop_min = gd.getNextNumber();// double
			terr_ttop_rel_lev = gd.getNextNumber();// double
			terr_ttop_rel_rad = gd.getNextNumber();// double
			terr_ttop_frac = gd.getNextNumber();// double
			terr_ttop_rem_rad = gd.getNextNumber();// double

	terr_boost_parallax = gd.getNextNumber();// double		terr_boost_parallax = gd.getNextNumber();// double
	terr_max_parallax = gd.getNextNumber();// double		terr_max_parallax = gd.getNextNumber();// double
	terr_hifreq_weight = gd.getNextNumber();// double		terr_hifreq_weight = gd.getNextNumber();// double
	@@ -3625,6 +3672,7 @@ min_str_neib_fpn 0.35
	properties.setProperty(prefix+"terr_alpha_loss", terr_alpha_loss+""); // double		properties.setProperty(prefix+"terr_alpha_loss", terr_alpha_loss+""); // double
	properties.setProperty(prefix+"terr_alpha_loss_lin", terr_alpha_loss_lin+""); // double		properties.setProperty(prefix+"terr_alpha_loss_lin", terr_alpha_loss_lin+""); // double
	properties.setProperty(prefix+"terr_alpha_offset", terr_alpha_offset+""); // double		properties.setProperty(prefix+"terr_alpha_offset", terr_alpha_offset+""); // double
			properties.setProperty(prefix+"terr_alpha_0offset", terr_alpha_0offset+""); // double
	properties.setProperty(prefix+"terr_alpha_min_veg", terr_alpha_min_veg+""); // double		properties.setProperty(prefix+"terr_alpha_min_veg", terr_alpha_min_veg+""); // double
	properties.setProperty(prefix+"terr_alpha_lpf", terr_alpha_lpf+""); // double		properties.setProperty(prefix+"terr_alpha_lpf", terr_alpha_lpf+""); // double
	properties.setProperty(prefix+"terr_alpha_piece_linear", terr_alpha_piece_linear+""); // boolean		properties.setProperty(prefix+"terr_alpha_piece_linear", terr_alpha_piece_linear+""); // boolean
	@@ -3650,6 +3698,20 @@ min_str_neib_fpn 0.35
	properties.setProperty(prefix+"terr_low_veget", terr_low_veget+""); // double		properties.setProperty(prefix+"terr_low_veget", terr_low_veget+""); // double
	properties.setProperty(prefix+"terr_scenes_pull0", terr_scenes_pull0+""); // double		properties.setProperty(prefix+"terr_scenes_pull0", terr_scenes_pull0+""); // double

			// scaling elevation losses for high elevations (decrease pull and/or lpf for high elevations)
			properties.setProperty(prefix+"terr_elev_scale_thresh", terr_elev_scale_thresh+""); // double
			properties.setProperty(prefix+"terr_elev_scale_pull", terr_elev_scale_pull+""); // boolean
			properties.setProperty(prefix+"terr_elev_scale_lpf", terr_elev_scale_lpf+""); // boolean
			// tree-top removal
			properties.setProperty(prefix+"terr_ttop_en", terr_ttop_en+""); // boolean
			properties.setProperty(prefix+"terr_ttop_gb", terr_ttop_gb+""); // double
			properties.setProperty(prefix+"terr_ttop_min", terr_ttop_min+""); // double
			properties.setProperty(prefix+"terr_ttop_rel_lev", terr_ttop_rel_lev+""); // double
			properties.setProperty(prefix+"terr_ttop_rel_rad", terr_ttop_rel_rad+""); // double
			properties.setProperty(prefix+"terr_ttop_frac", terr_ttop_frac+""); // double
			properties.setProperty(prefix+"terr_ttop_rem_rad", terr_ttop_rem_rad+""); // double


	properties.setProperty(prefix+"terr_boost_parallax", terr_boost_parallax+""); // double		properties.setProperty(prefix+"terr_boost_parallax", terr_boost_parallax+""); // double
	properties.setProperty(prefix+"terr_max_parallax", terr_max_parallax+""); // double		properties.setProperty(prefix+"terr_max_parallax", terr_max_parallax+""); // double
	properties.setProperty(prefix+"terr_hifreq_weight", terr_hifreq_weight+""); // double		properties.setProperty(prefix+"terr_hifreq_weight", terr_hifreq_weight+""); // double
	@@ -4371,6 +4433,7 @@ min_str_neib_fpn 0.35
	if (properties.getProperty(prefix+"terr_alpha_loss")!= null) terr_alpha_loss=Double.parseDouble(properties.getProperty(prefix+"terr_alpha_loss"));		if (properties.getProperty(prefix+"terr_alpha_loss")!= null) terr_alpha_loss=Double.parseDouble(properties.getProperty(prefix+"terr_alpha_loss"));
	if (properties.getProperty(prefix+"terr_alpha_loss_lin")!= null) terr_alpha_loss_lin=Double.parseDouble(properties.getProperty(prefix+"terr_alpha_loss_lin"));		if (properties.getProperty(prefix+"terr_alpha_loss_lin")!= null) terr_alpha_loss_lin=Double.parseDouble(properties.getProperty(prefix+"terr_alpha_loss_lin"));
	if (properties.getProperty(prefix+"terr_alpha_offset")!= null) terr_alpha_offset=Double.parseDouble(properties.getProperty(prefix+"terr_alpha_offset"));		if (properties.getProperty(prefix+"terr_alpha_offset")!= null) terr_alpha_offset=Double.parseDouble(properties.getProperty(prefix+"terr_alpha_offset"));
			if (properties.getProperty(prefix+"terr_alpha_0offset")!= null) terr_alpha_0offset=Double.parseDouble(properties.getProperty(prefix+"terr_alpha_0offset"));
	if (properties.getProperty(prefix+"terr_alpha_min_veg")!= null) terr_alpha_min_veg=Double.parseDouble(properties.getProperty(prefix+"terr_alpha_min_veg"));		if (properties.getProperty(prefix+"terr_alpha_min_veg")!= null) terr_alpha_min_veg=Double.parseDouble(properties.getProperty(prefix+"terr_alpha_min_veg"));
	if (properties.getProperty(prefix+"terr_alpha_lpf")!= null) terr_alpha_lpf=Double.parseDouble(properties.getProperty(prefix+"terr_alpha_lpf"));		if (properties.getProperty(prefix+"terr_alpha_lpf")!= null) terr_alpha_lpf=Double.parseDouble(properties.getProperty(prefix+"terr_alpha_lpf"));
	if (properties.getProperty(prefix+"terr_alpha_piece_linear")!= null) terr_alpha_piece_linear=Boolean.parseBoolean(properties.getProperty(prefix+"terr_alpha_piece_linear"));		if (properties.getProperty(prefix+"terr_alpha_piece_linear")!= null) terr_alpha_piece_linear=Boolean.parseBoolean(properties.getProperty(prefix+"terr_alpha_piece_linear"));
	@@ -4395,6 +4458,18 @@ min_str_neib_fpn 0.35
	if (properties.getProperty(prefix+"terr_elev_alpha_pwr")!= null) terr_elev_alpha_pwr=Double.parseDouble(properties.getProperty(prefix+"terr_elev_alpha_pwr"));		if (properties.getProperty(prefix+"terr_elev_alpha_pwr")!= null) terr_elev_alpha_pwr=Double.parseDouble(properties.getProperty(prefix+"terr_elev_alpha_pwr"));
	if (properties.getProperty(prefix+"terr_low_veget")!= null) terr_low_veget=Double.parseDouble(properties.getProperty(prefix+"terr_low_veget"));		if (properties.getProperty(prefix+"terr_low_veget")!= null) terr_low_veget=Double.parseDouble(properties.getProperty(prefix+"terr_low_veget"));
	if (properties.getProperty(prefix+"terr_scenes_pull0")!= null) terr_scenes_pull0=Double.parseDouble(properties.getProperty(prefix+"terr_scenes_pull0"));		if (properties.getProperty(prefix+"terr_scenes_pull0")!= null) terr_scenes_pull0=Double.parseDouble(properties.getProperty(prefix+"terr_scenes_pull0"));
			// scaling elevation losses for high elevations (decrease pull and/or lpf for high elevations)
			if (properties.getProperty(prefix+"terr_elev_scale_thresh")!= null) terr_elev_scale_thresh=Double.parseDouble(properties.getProperty(prefix+"terr_elev_scale_thresh"));
			if (properties.getProperty(prefix+"terr_elev_scale_pull")!= null) terr_elev_scale_pull=Boolean.parseBoolean(properties.getProperty(prefix+"terr_elev_scale_pull"));
			if (properties.getProperty(prefix+"terr_elev_scale_lpf")!= null) terr_elev_scale_lpf=Boolean.parseBoolean(properties.getProperty(prefix+"terr_elev_scale_lpf"));
			// tree-top removal
			if (properties.getProperty(prefix+"terr_ttop_en")!= null) terr_ttop_en=Boolean.parseBoolean(properties.getProperty(prefix+"terr_ttop_en"));
			if (properties.getProperty(prefix+"terr_ttop_gb")!= null) terr_ttop_gb=Double.parseDouble(properties.getProperty(prefix+"terr_ttop_gb"));
			if (properties.getProperty(prefix+"terr_ttop_min")!= null) terr_ttop_min=Double.parseDouble(properties.getProperty(prefix+"terr_ttop_min"));
			if (properties.getProperty(prefix+"terr_ttop_rel_lev")!= null) terr_ttop_rel_lev=Double.parseDouble(properties.getProperty(prefix+"terr_ttop_rel_lev"));
			if (properties.getProperty(prefix+"terr_ttop_rel_rad")!= null) terr_ttop_rel_rad=Double.parseDouble(properties.getProperty(prefix+"terr_ttop_rel_rad"));
			if (properties.getProperty(prefix+"terr_ttop_frac")!= null) terr_ttop_frac=Double.parseDouble(properties.getProperty(prefix+"terr_ttop_frac"));
			if (properties.getProperty(prefix+"terr_ttop_rem_rad")!= null) terr_ttop_rem_rad=Double.parseDouble(properties.getProperty(prefix+"terr_ttop_rem_rad"));

	if (properties.getProperty(prefix+"terr_boost_parallax")!= null) terr_boost_parallax=Double.parseDouble(properties.getProperty(prefix+"terr_boost_parallax"));		if (properties.getProperty(prefix+"terr_boost_parallax")!= null) terr_boost_parallax=Double.parseDouble(properties.getProperty(prefix+"terr_boost_parallax"));
	if (properties.getProperty(prefix+"terr_max_parallax")!= null) terr_max_parallax=Double.parseDouble(properties.getProperty(prefix+"terr_max_parallax"));		if (properties.getProperty(prefix+"terr_max_parallax")!= null) terr_max_parallax=Double.parseDouble(properties.getProperty(prefix+"terr_max_parallax"));
	@@ -5087,6 +5162,7 @@ min_str_neib_fpn 0.35
	imp.terr_alpha_loss = this.terr_alpha_loss;		imp.terr_alpha_loss = this.terr_alpha_loss;
	imp.terr_alpha_loss_lin = this.terr_alpha_loss_lin;		imp.terr_alpha_loss_lin = this.terr_alpha_loss_lin;
	imp.terr_alpha_offset = this.terr_alpha_offset;		imp.terr_alpha_offset = this.terr_alpha_offset;
			imp.terr_alpha_0offset = this.terr_alpha_0offset;
	imp.terr_alpha_min_veg = this.terr_alpha_min_veg;		imp.terr_alpha_min_veg = this.terr_alpha_min_veg;
	imp.terr_alpha_lpf = this.terr_alpha_lpf;		imp.terr_alpha_lpf = this.terr_alpha_lpf;
	imp.terr_alpha_piece_linear = this.terr_alpha_piece_linear;		imp.terr_alpha_piece_linear = this.terr_alpha_piece_linear;
	@@ -5110,6 +5186,18 @@ min_str_neib_fpn 0.35
	imp.terr_elev_alpha_pwr = this.terr_elev_alpha_pwr;		imp.terr_elev_alpha_pwr = this.terr_elev_alpha_pwr;
	imp.terr_low_veget = this.terr_low_veget;		imp.terr_low_veget = this.terr_low_veget;
	imp.terr_scenes_pull0 = this.terr_scenes_pull0;		imp.terr_scenes_pull0 = this.terr_scenes_pull0;
			// scaling elevation losses for high elevations (decrease pull and/or lpf for high elevations)
			imp.terr_elev_scale_thresh = this.terr_elev_scale_thresh;
			imp.terr_elev_scale_pull = this.terr_elev_scale_pull;
			imp.terr_elev_scale_lpf = this.terr_elev_scale_lpf;
			// tree-top removal
			imp.terr_ttop_en = this.terr_ttop_en;
			imp.terr_ttop_gb = this.terr_ttop_gb;
			imp.terr_ttop_min = this.terr_ttop_min;
			imp.terr_ttop_rel_lev = this.terr_ttop_rel_lev;
			imp.terr_ttop_rel_rad = this.terr_ttop_rel_rad;
			imp.terr_ttop_frac = this.terr_ttop_frac;
			imp.terr_ttop_rem_rad = this.terr_ttop_rem_rad;

	imp.terr_boost_parallax = this.terr_boost_parallax;		imp.terr_boost_parallax = this.terr_boost_parallax;
	imp.terr_max_parallax = this.terr_max_parallax;		imp.terr_max_parallax = this.terr_max_parallax;

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