added channel filter to "Remove Outlayers"

src/main/java/Aberration_Calibration.java

@@ -5984,9 +5984,15 @@ if (MORE_BUTTONS) {
 				IJ.showMessage("LENS_DISTORTION.fittingStrategy is not set");
 				return;
 			}
+			boolean [] selectedChannels=null;
+			if (ABERRATIONS_PARAMETERS!=null){
+				selectedChannels=ABERRATIONS_PARAMETERS.getChannelSelection(LENS_DISTORTIONS);
+				
+			}
 			LENS_DISTORTIONS.removeOutLayers(
 					-1, //int series, (<0 - ask)
-					-1  //int numOutLayers  (<0 - ask)
+					-1,  //int numOutLayers  (<0 - ask)
+					selectedChannels
 					);
 			return;
 		}

src/main/java/Distortions.java

@@ -3676,14 +3676,23 @@ List calibration
     	return true;
     }
     
-    public boolean removeOutLayers(int series, int numOutLayers){
+    public boolean removeOutLayers(
+    		int series,
+    		int numOutLayers,
+    		boolean [] selectedChannels){
     	int numSeries=fittingStrategy.getNumSeries();
     	boolean removeEmpty=false;
     	boolean recalculate=false;
+    	boolean applyChannelFilter=false;
 		int filter=filterForAll;
     	if ((series<0) || (numOutLayers<0)) {
     		GenericDialog gd = new GenericDialog("Select series to process");
     		gd.addNumericField("Iteration number to start (0.."+(numSeries-1)+")", this.seriesNumber, 0);
+    		if (selectedChannels != null) {
+    			String s="";
+    			for (boolean b:selectedChannels)s+=b?"+":"-";
+    			gd.addCheckbox("Filter by channel selection ("+s+")", applyChannelFilter);
+    		}
     		gd.addCheckbox("Recalculate parameters vector from selected strategy",recalculate);
     		gd.addNumericField("Number of outlayers to show", 10, 0);
     		gd.addCheckbox("Remove empty (rms==NaN) images", removeEmpty);
@@ -3691,6 +3700,7 @@ List calibration
     		gd.showDialog();
     		if (gd.wasCanceled()) return false;
     		this.seriesNumber=                           (int) gd.getNextNumber();
+    		if (selectedChannels != null) applyChannelFilter=  gd.getNextBoolean();
     		recalculate=                                       gd.getNextBoolean();
     		numOutLayers=                                (int) gd.getNextNumber();
     		removeEmpty=                                       gd.getNextBoolean();
@@ -3700,12 +3710,22 @@ List calibration
     	} else {
     		this.seriesNumber=series;
     	}
+    	if (!applyChannelFilter) selectedChannels=null;
 //	    initFittingSeries(!recalculate,this.filterForAll,this.seriesNumber); // will set this.currentVector
 	    initFittingSeries(!recalculate,this.filterForAll,this.seriesNumber); // will set this.currentVector
 		this.currentfX=calculateFxAndJacobian(this.currentVector, false); // is it always true here (this.jacobian==null)
 		double [] errors=calcErrors(calcYminusFx(this.currentfX)); // seem to have errors? - now may return NaN!
 		double    rms=   calcError (calcYminusFx(this.currentfX));
 		boolean [] selectedImages=fittingStrategy.selectedImages();
+		if (selectedChannels!=null){
+			selectedImages=selectedImages.clone(); // disconnect from original for modification
+			for (int i=0;i<selectedImages.length;i++) if (selectedImages[i]){
+				int chn=this.fittingStrategy.distortionCalibrationData.gIP[i].channel;
+				if ((chn<0) || (chn>=selectedChannels.length) || !selectedChannels[chn]){
+					selectedImages[i]=false;
+				}
+			}			
+		}
 		int numSelectedNotNaNImages=0;
 		int numNaN=0;
 		for (int i=0;i<selectedImages.length;i++) if (selectedImages[i]) {