refactoring

src/main/java/com/elphel/imagej/dp/Eyesis_Correction.java

@@ -80,8 +80,11 @@ import com.elphel.imagej.common.DoubleGaussianBlur;
 import com.elphel.imagej.common.GenericJTabbedDialog;
 import com.elphel.imagej.common.ShowDoubleFloatArrays;
 import com.elphel.imagej.common.WindowTools;
+import com.elphel.imagej.gpu.GPUTileProcessor;
+import com.elphel.imagej.gpu.JCuda_ImageJ_Example_Plugin;
 import com.elphel.imagej.jp4.JP46_Reader_camera;
 import com.elphel.imagej.lwir.LwirReader;
+import com.elphel.imagej.tensorflow.TensorflowInferModel;
 
 import ij.CompositeImage;
 import ij.IJ;

src/main/java/com/elphel/imagej/dp/GeometryCorrection.java

@@ -87,7 +87,7 @@ public class GeometryCorrection {
 	public  CorrVector extrinsic_corr;
 
 	public RigOffset   rigOffset =    null;
-	int []             woi_tops; // used to calculate scanline timing
+	public int []             woi_tops; // used to calculate scanline timing
 
 	public int [] getWOITops() {
 		return woi_tops;

src/main/java/com/elphel/imagej/dp/ImageDtt.java

@@ -168,9 +168,9 @@ public class ImageDtt {
 			  "top-aux",  "bottom-aux",  "left_aux",  "right-aux",  "diagm-aux",  "diago-aux", "hor-aux",  "vert-aux",
 			  "inter", "other", "dbg1"};
 
-	  static int  ML_OTHER_TARGET =            0;  // Offset to target disparity data in  ML_OTHER_INDEX layer tile
-	  static int  ML_OTHER_GTRUTH =            2;  // Offset to ground truth disparity data in ML_OTHER_INDEX layer tile
-	  static int  ML_OTHER_GTRUTH_STRENGTH =   4;  // Offset to ground truth confidence data in  ML_OTHER_INDEX layer tile
+	  public static int  ML_OTHER_TARGET =            0;  // Offset to target disparity data in  ML_OTHER_INDEX layer tile
+	  public static int  ML_OTHER_GTRUTH =            2;  // Offset to ground truth disparity data in ML_OTHER_INDEX layer tile
+	  public static int  ML_OTHER_GTRUTH_STRENGTH =   4;  // Offset to ground truth confidence data in  ML_OTHER_INDEX layer tile
 
 
 	  // indices in cross-camera correlation results
@@ -5842,7 +5842,7 @@ public class ImageDtt {
 	 * From Stephan Preibisch's Multithreading.java class. See:
 	 * http://repo.or.cz/w/trakem2.git?a=blob;f=mpi/fruitfly/general/MultiThreading.java;hb=HEAD
 	 */
-	static Thread[] newThreadArray(int maxCPUs) {
+	public static Thread[] newThreadArray(int maxCPUs) {
 		int n_cpus = Runtime.getRuntime().availableProcessors();
 		if (n_cpus>maxCPUs)n_cpus=maxCPUs;
 		return new Thread[n_cpus];

src/main/java/com/elphel/imagej/dp/TwoQuadCLT.java

@@ -43,6 +43,7 @@ import java.util.Random;
 import com.elphel.imagej.cameras.EyesisCorrectionParameters;
 import com.elphel.imagej.common.GenericJTabbedDialog;
 import com.elphel.imagej.common.ShowDoubleFloatArrays;
+import com.elphel.imagej.gpu.GPUTileProcessor;
 import com.elphel.imagej.jp4.JP46_Reader_camera;
 
 import ij.IJ;

src/main/java/com/elphel/imagej/dp/GPUTileProcessor.java → src/main/java/com/elphel/imagej/gpu/GPUTileProcessor.java

-package com.elphel.imagej.dp;
+package com.elphel.imagej.gpu;
 /**
 ** -----------------------------------------------------------------------------**
 ** GPUTileProcessor.java
@@ -52,6 +52,10 @@ import java.nio.file.Files;
 import java.nio.file.Paths;
 import java.util.concurrent.atomic.AtomicInteger;
 
+import com.elphel.imagej.dp.DttRad2;
+import com.elphel.imagej.dp.GeometryCorrection;
+import com.elphel.imagej.dp.ImageDtt;
+
 import Jama.Matrix;
 import ij.IJ;
 import jcuda.Pointer;
@@ -73,12 +77,12 @@ public class GPUTileProcessor {
 	static String GPU_CONVERT_CORRECT_TILES_NAME = "convert_correct_tiles";
 	static String GPU_IMCLT_RBG_NAME = "imclt_rbg";
 //  pass some defines to gpu source code with #ifdef JCUDA
-	static int DTT_SIZE =                8;
+	public static int DTT_SIZE =                8;
 	static int THREADSX =         DTT_SIZE;
-	static int NUM_CAMS =                4;
+	public static int NUM_CAMS =                4;
 	static int NUM_COLORS =              3;
-	static int IMG_WIDTH =            2592;
-	static int IMG_HEIGHT =           1936;
+	public static int IMG_WIDTH =            2592;
+	public static int IMG_HEIGHT =           1936;
 	static int KERNELS_HOR =           164;
 	static int KERNELS_VERT =          123;
 	static int KERNELS_LSTEP =           4;
@@ -592,7 +596,7 @@ public class GPUTileProcessor {
     	cuCtxSynchronize();
     }
 
-    float [][] getRBG (int ncam){
+    public float [][] getRBG (int ncam){
         int height = (IMG_HEIGHT + DTT_SIZE);
         int width =  (IMG_WIDTH + DTT_SIZE);
         int rslt_img_size =      width * height;

src/main/java/com/elphel/imagej/dp/JCuda_ImageJ_Example_Plugin.java → src/main/java/com/elphel/imagej/gpu/JCuda_ImageJ_Example_Plugin.java

-package com.elphel.imagej.dp;
+package com.elphel.imagej.gpu;
 /**
  * ImageJ Plugin using JCuda
  * 

src/main/java/com/elphel/imagej/gpu/package-info.java

+/**
+ * 
+ */
+/**
+ * @author eyesis
+ *
+ */
+package com.elphel.imagej.gpu;
\ No newline at end of file

src/main/java/com/elphel/imagej/dp/TensorflowExamplePlugin.java → src/main/java/com/elphel/imagej/tensorflow/TensorflowExamplePlugin.java

-package com.elphel.imagej.dp;
+package com.elphel.imagej.tensorflow;
 /**
  * Copyright (C) 2018 Elphel, Inc.
  * SPDX-License-Identifier: GPL-3.0-or-later

src/main/java/com/elphel/imagej/dp/TensorflowInferModel.java → src/main/java/com/elphel/imagej/tensorflow/TensorflowInferModel.java

-package com.elphel.imagej.dp;
+package com.elphel.imagej.tensorflow;
 /**
  * Copyright (C) 2018 Elphel, Inc.
  * SPDX-License-Identifier: GPL-3.0-or-later
@@ -19,6 +19,7 @@ import org.tensorflow.SavedModelBundle;
 import org.tensorflow.Tensor;
 
 import com.elphel.imagej.common.ShowDoubleFloatArrays;
+import com.elphel.imagej.dp.ImageDtt;
 
 import ij.IJ;
 import ij.ImagePlus;

src/main/java/com/elphel/imagej/tensorflow/package-info.java

+/**
+ * 
+ */
+/**
+ * @author eyesis
+ *
+ */
+package com.elphel.imagej.tensorflow;
\ No newline at end of file