committing w/o breaking - 15

src/main/java/com/elphel/imagej/calibration/EyesisAberrations.java

@@ -2868,6 +2868,15 @@ public class EyesisAberrations {
 					y0 * subpixel/2,
 					tile_size * subpixel/2,
 					tile_size * subpixel/2); // getting here
+			if (is_mono) {
+				simul_pixels=new double[1][];
+				simul_pixels[0]=simulationPattern.extractBayerSim (
+						simArray, // [0] - regular pixels, [1] - shifted by 1/2 diagonally, for checker greens
+						imgWidth*subpixel/2,
+						PSFCellSim,
+						subpixel, // 4
+						-1); //New :  -1 - extract mono TODO: see if 1/2pix shift is needed
+			} else {
 				simul_pixels=new double[6][];
 				for (i=0;i<simul_pixels.length; i++) {
 					if (colorComponents.colorsToCorrect[i]) simul_pixels[i]=simulationPattern.extractBayerSim (
@@ -2878,7 +2887,10 @@ public class EyesisAberrations {
 							i);
 					else simul_pixels[i]=null;
 				}
-            int index=matchSimulatedPattern.getUVIndex((PSFCell.y+PSFCell.height/2)*imgWidth+(PSFCell.x+PSFCell.width/2));
+			}
+//System.out.println("PSFCell.y="+PSFCell.y+" PSFCell.height="+PSFCell.height+" imgWidth="+imgWidth+" PSFCell.x="+PSFCell.x+" PSFCell.width="+PSFCell.width+" matchSimulatedPattern.UV_INDEX.length="+matchSimulatedPattern.UV_INDEX.length);
+			int index=matchSimulatedPattern.getUVIndex(
+					(PSFCell.y+PSFCell.height/2)*imgWidth+(PSFCell.x+PSFCell.width/2));
 
 			if (index<0) {
 				System.out.println ("Error, No UV pattern @ x="+(PSFCell.x+PSFCell.width/2)+", y="+(PSFCell.y+PSFCell.height/2));