Bug 706520 - Fortran: in body documentation lands on wrong place

In case we are in the body of a subroutine or function set the in body flag.
When comment has been handled (each Fortran comment block is handled as one block, not as parts) reste the in body flag.
In case we have to handle documentation of an argument, reset the inbodyDocs field to the empty string. The documentation stored was no inbody documentation but argument documentation).

Bug 676879 - parameter on doxywizard manual

Added sentenc in respect to possible argument for doxywizard
Added images to the LaTex / pdf version of the manual

Feature/docu

__attribute__ was seen (markdown) as the bold word attribute
Reformulation of a sentence due to a not nice split of word (__declspec was split directly after __ in pdf)

Some extra files to be ignored (windows and cygwin builds)

In case option started with -- and is not a known valuue (help or version) and error is given instead of starting Doxygen

Bug 668007 - HTML commands - documentation of </dd> tag missing

Fixes for sqlite3 backend

Signed-off-by: Adrian Negreanu <groleo@gmail.com>

Signed-off-by: Adrian Negreanu <groleo@gmail.com>

Signed-off-by: Adrian Negreanu <groleo@gmail.com>

Signed-off-by: Adrian Negreanu <groleo@gmail.com>

Signed-off-by: Adrian Negreanu <groleo@gmail.com>

Signed-off-by: Adrian Negreanu <groleo@gmail.com>

Signed-off-by: Adrian Negreanu <adrian.m.negreanu@intel.com>

Signed-off-by: Adrian Negreanu <adrian.m.negreanu@intel.com>

Signed-off-by: Adrian Negreanu <adrian.m.negreanu@intel.com>