Release-1.7.5.1-20111027

Doxyfile

@@ -121,6 +121,7 @@ EXCLUDE                = src/code.cpp \
                          src/doxygen_php.h \
                          src/compound_xsd.h \
                          src/layout_default.h \
+			 src/bib2xhtml.h
 EXCLUDE_SYMLINKS       = NO
 EXCLUDE_PATTERNS       =
 EXCLUDE_SYMBOLS        =

INSTALL

-DOXYGEN Version 1.7.5.1-20110925
+DOXYGEN Version 1.7.5.1-20111027
 
 Please read the installation section of the manual 
 (http://www.doxygen.org/install.html) for instructions.
 
 --------
-Dimitri van Heesch (25 September 2011)
+Dimitri van Heesch (27 October 2011)

README

-DOXYGEN Version 1.7.5.1_20110925
+DOXYGEN Version 1.7.5.1_20111027
 
 Please read INSTALL for compilation instructions.
 
@@ -26,4 +26,4 @@ forum.
 
 Enjoy,
 
-Dimitri van Heesch (dimitri@stack.nl) (25 September 2011)
+Dimitri van Heesch (dimitri@stack.nl) (27 October 2011)

configure

@@ -20,7 +20,7 @@ doxygen_version_minor=7
 doxygen_version_revision=5.1
 
 #NOTE: Setting version_mmn to "NO" will omit mmn info from the package.
-doxygen_version_mmn=20110925
+doxygen_version_mmn=20111027
 
 bin_dirs=`echo $PATH | sed -e "s/:/ /g"`
 

doc/commands.doc

@@ -629,8 +629,7 @@ Structural indicators
  */
 \endverbatim
 
- You can refer to the main page using \\ref index (if the treeview
- is disabled, otherwise you should use \\ref main).
+ You can refer to the main page using \\ref index.
 
  \sa section \ref cmdsection "\\section",
      section \ref cmdsubsection "\\subsection", and

doc/faq.doc

@@ -254,6 +254,12 @@ in a configuration file from the command line (assuming a UNIX environment):
 ( cat Doxyfile ; echo "PROJECT_NUMBER=1.0" ) | doxygen -
 \endverbatim
 
+For Windows the following would do the same:
+
+\verbatim
+( type Doxyfile & echo PROJECT_NUMBER=1.0 ) | doxygen.exe -
+\endverbatim
+
 If multiple options with the same name are specified then doxygen will use 
 the last one. To append to an existing option you can use the += operator.
 

src/bib2xhtml.pl

+#
+# Below is a stripped down version of bib2xhtml used by doxygen.
+# For the full version see http://www.spinellis.gr/sw/textproc/bib2xhtml/
+#
+# Convert from bibtex to XHTML.
+#
+# (C) Copyright 1995, 1996 David Hull.
+# (David Hull / hull@cs.uiuc.edu / http://www.uiuc.edu/ph/www/dlhull)
+#
+# (C) Copyright 2002-2010 Diomidis Spinellis
+# http://www.spinellis.gr
+#
+# This program is free software.  You can redistribute it and/or modify
+# it under the terms of the GNU General Public License.  See the
+# files README and COPYING for details.
+#
+# This source code contains UTF-8 characters.  You might want to use
+# an appropriate editor, if you want to view/modify the LaTeX to Unicode
+# substitution commands.
+#
+
+use Getopt::Std;
+use open IO => ':crlf';
+$label_styles{'numbered'} = 	$LABEL_NUMBERED = 	2;
+$list_start[$LABEL_NUMBERED] = 'dl class="citelist"';
+$list_end[$LABEL_NUMBERED] = "/dl";
+@tmpfiles = ();
+sub html_ent {
+	s/\\i\b/i/g;
+	s/\\\'(\001\d+)\{([AEIOUaeiou])\1\}/&$2acute;/gs;
+	s/\\\'([AEIOUaeiou])/&$1acute;/g;
+	s/\\\`(\001\d+)\{([AEIOUaeiou])\1\}/&$2grave;/gs;
+	s/\\\`([AEIOUaeiou])/&$1grave;/g;
+	s/\\\"(\001\d+)\{([AEIOUaeiouy])\1\}/&$2uml;/gs;
+	s/\\\"([AEIOUaeiouy])/&$1uml;/g;
+	s/\\\~(\001\d+)\{([ANOano])\1\}/&$2tilde;/gs;
+	s/\\\~([ANOano])/&$1tilde;/g;
+	s/\\\^(\001\d+)\{([AEIOUaeiou])\1\}/&$2circ;/gs;
+	s/\\\^([AEIOUaeiou])/&$1circ;/g;
+	s/\\c(\001\d+)\{([Cc])\1\}/&$2cedil;/gs;
+	s/\\u(\001\d+)\{(.)\1\}/$2/gs;
+	s/\\v(\001\d+)\{(.)\1\}/$2/gs;
+	s/\\([lL])\b/$1/g;
+	s/\\\=(\001\d+)\{(.)\1\}/$2/gs;
+	s/\\\=(.)/$1/g;
+	s/\\\.(\001\d+)\{(.)\1\}/$2/gs;
+	s/\\\.(.)/$1/g;
+	s/\\([Oo])\b\s*/&$1slash;/g;
+	s/\\AA\b\s*/Å/g;
+	s/\\aa\b\s*/å/g;
+	s/\\AE\b\s*/Æ/g;
+	s/\\ae\b\s*/æ/g;
+	s/\\ss\b\s*/ß/g;
+	s/\\S\b\s*/§/g;
+	s/\\P\b\s*/¶/g;
+	s/\\pounds\b\s*/£/g;
+	s/\?\`/¿/g;
+	s/\!\`/¡/g;
+	s/\-\-\-/—/g;
+	s/([^\!])\-\-([^\>])/$1–$2/g;
+	s/\\([aA]lpha)\b/&$1;/g;
+	s/\\([bB]eta)\b/&$1;/g;
+	s/\\([gG]amma)\b/&$1;/g;
+	s/\\([dD]elta)\b/&$1;/g;
+	s/\\varepsilon\b/ε/g;
+	s/\\([eE]psilon)\b/&$1;/g;
+	s/\\([zZ]eta)\b/&$1;/g;
+	s/\\([eE]ta)\b/&$1;/g;
+	s/\\([tT]heta)\b/&$1;/g;
+	s/\\vartheta\b/θ/g;
+	s/\\([iI]ota)\b/&$1;/g;
+	s/\\([kK]appa)\b/&$1;/g;
+	s/\\([lL]ambda)\b/&$1;/g;
+	s/\\([mM]u)\b/&$1;/g;
+	s/\\([nN]u)\b/&$1;/g;
+	s/\\([xX]i)\b/&$1;/g;
+	s/\\([oO]micron)\b/&$1;/g;
+	s/\\([pP]i)\b/&$1;/g;
+	s/\\varpi\b/π/g;
+	s/\\([rR]ho)\b/&$1;/g;
+	s/\\varrho\b/ρ/g;
+	s/\\([sS]igma)\b/&$1;/g;
+	s/\\varsigma\b/ς/g;
+	s/\\([tT]au)\b/&$1;/g;
+	s/\\([uU]psilon)\b/&$1;/g;
+	s/\\([pP]hi)\b/&$1;/g;
+	s/\\varphi\b/φ/g;
+	s/\\([cC]hi)\b/&$1;/g;
+	s/\\([pP]si)\b/&$1;/g;
+	s/\\([oO]mega)\b/&$1;/g;
+}
+foreach (@ARGV) {
+  if (/\.bib$/) {
+    $bibfile = $_;
+    $bibfile =~ s/\.bib$//;
+    push(@bibfiles,$bibfile);
+  } else {
+    $htmlfile = $_;
+  }
+}
+exit(1) unless defined($htmlfile);
+$bibdatacmd="\\bibdata{".join(',',@bibfiles)."}";
+$label_style = $LABEL_NUMBERED;
+$bstfile = "doxygen";
+umask(077);
+open(HTMLFILE,">$htmlfile$$");
+if (open(OHTMLFILE, "$htmlfile")) {
+    $mode = (stat OHTMLFILE)[2] & 0xfff;
+} else {
+  print "Error opening $htmlfile\n";
+  exit(1);
+}
+$beginstring = "<!-- BEGIN CITATIONS -->";
+$endstring = "<!-- END CITATIONS -->";
+@citations = ();
+loop:
+while (<OHTMLFILE>) {
+  print HTMLFILE;
+  last loop if m/^$beginstring$/;
+}
+loop:
+while (<OHTMLFILE>) {
+  print HTMLFILE;
+  last loop if m/^$endstring$/;
+  push(@citations, $2) if m/^([^\\]*)?(.+\})(.*)?$/;
+}
+push(@citations, $bibdatacmd);
+$auxfile = "bib$$";
+push(@tmpfiles, "$auxfile.aux");
+open(AUXFILE, ">$auxfile" . ".aux");
+print AUXFILE "\\relax\n\\bibstyle{$bstfile}\n";
+foreach $citation (@citations) {
+  print AUXFILE "$citation\n";
+}
+close(AUXFILE);
+push(@tmpfiles, "$auxfile.blg");
+push(@tmpfiles, "$auxfile.bbl");
+`bibtex $auxfile 2>&1`;
+if ($?==-1)
+{
+  print "bibtex command failed: $!\n";
+}
+$beginstring = "<!-- BEGIN BIBLIOGRAPHY -->";
+$endstring = "<!-- END BIBLIOGRAPHY -->";
+loop:
+while (<OHTMLFILE>) {
+  last loop if m/^$beginstring$/;
+  print HTMLFILE;
+}
+loop:
+while (<OHTMLFILE>) {
+  last loop if m/^$endstring$/;
+}
+print HTMLFILE "$beginstring\n";
+$t = $auxfile . ".bbl";
+$/ = "";
+open(BBLFILE, "<$t") || die "error opening $t: $!\n";
+$nentry = 0;
+loop:
+while (<BBLFILE>) {
+    if (($nentry == 0) && (m/^#/)) {
+	if ((m/#\s*label-style:\s*(\S+)/) && (! defined $label_style)) {
+	    $label_style = $label_styles{$1};
+	    if (! defined $label_style) {
+		print STDERR "label style unknown: \n";
+		next loop;
+	    }
+	}
+	next loop;
+    }
+    $nentry++;
+    ($bcite, $blabel) = m+<dt><a name=\"([^\"]*)\">\[([^\]]*)\]</a></dt><dd>+;
+    $blabel = "$nentry";
+    $bibcite{$bcite} = $blabel;
+}
+close(BBLFILE);
+$label_style = $LABEL_DEFAULT if (! defined $label_style);
+$list_start = $list_start[$label_style];
+$list_end = $list_end[$label_style];
+print HTMLFILE "<$list_start>\n\n";
+open(BBLFILE, "<$t") || die "error opening $t: $!\n";
+$nentry = 0;
+loop:
+while (<BBLFILE>) {
+    next loop if (($nentry == 0) && (m/^#/));
+    $nentry++;
+    s/\\\{/\002/g;
+    s/\\\}/\003/g;
+    s/\\\$/\004/g;
+    {
+	local ($c, $l, $z) = (0, 0, ());
+	s/([\{\}])/join("","\001",($1 eq "\{" ? $z[$l++]=$c++ : $z[--$l]),$1)/ge;
+    }
+    s/\%\n//g;
+    s/(\.(<\/cite>|<\/a>|\')+)\./$1/g;
+    s:(<dt><a name=\"[^\"]*\">\[)[^\]]*(\]</a></dt><dd>):$1$nentry$2:;
+    while (m/(\\(cite(label)?)(\001\d+)\{([^\001]+)\4\})/) {
+	$old = $1;
+	$cmd = $2;
+	$doxref = defined($3);
+	$bcite = $5;
+	if (! defined $bibcite{$bcite}) {
+	    $blabel = " [" . $bcite . "]";
+	} elsif ($doxref) {
+	    $blabel = " <a href=\"#$bcite\">[" . $bibcite{$bcite} . "]<\/a>";
+	} else {
+	    $blabel = " [" . $bibcite{$bcite} . "]";
+	}
+	$old =~ s/(\W)/\\$1/g;
+	s/\s*$old/$blabel/g;
+    }
+    s/In (<a href=\"[^\"]*\">)([^\[]+) \[(\2)/In $1\[$2/;
+    s/\\htmladdnormallink(foot)?(\001\d+)\{([^\001]+)\2\}(\001\d+)\{([^\001]+)\4\}/<a href="$5">$3<\/a>/gs;
+    s/\&amp;/\005/g;
+    s/\\?&/&amp;/g;
+    s/\005/&amp;/g;
+    html_ent();
+    while (m/\\char([\'\"]?[0-9a-fA-F]+)/) {
+	$o = $r = $1;
+	if ($r =~ s/^\'//) {
+	    $r = oct($r);
+	} elsif ($r =~ s/^\"//) {
+	    $r = hex($r);
+	}
+	s/\\char$o\s*/&#$r;/g;
+    }
+    s/{\\etalchar\001(\d+)\{(.)}\001\1\}/$2/g;
+    s/\\par\b/<p \/>/g;
+    s/\\url(\001\d+)\{(.*)\1\}/<a href="$2">$2<\/a>/gs;
+    s/\\href(\001\d+)\{(.*)\1\}(\001\d+)\{([^\001]*)\3\}/<a href="$2">$4<\/a>/gs;
+    s/\\href(\001\d+)\{(.*)\1\}/<a href="$2">$2<\/a>/gs;
+    s/(\001\d+)\{\\rm\s+(.*)\1\}/$2/gs;
+    s/\\textrm(\001\d+)\{(.*)\1\}/$2/gs;
+    s/(\001\d+)\{\\em\s+(.*)\1\}/<em>$2<\/em>/gs;
+    s/(\001\d+)\{\\it\s+(.*)\1\}/<i>$2<\/i>/gs;
+    s/(\001\d+)\{\\bf\s+(.*)\1\}/<b>$2<\/b>/gs;
+    s/(\001\d+)\{\\tt\s+(.*)\1\}/<tt>$2<\/tt>/gs;
+    s/\\emph(\001\d+)\{(.*)\1\}/<em>$2<\/em>/gs;
+    s/\\textit(\001\d+)\{(.*)\1\}/<i>$2<\/i>/gs;
+    s/\\textbf(\001\d+)\{(.*)\1\}/<b>$2<\/b>/gs;
+    s/\\texttt(\001\d+)\{(.*)\1\}/<tt>$2<\/tt>/gs;
+    s/\\mathrm(\001\d+)\{(.*)\1\}/$2/gs;
+    s/\\mathnormal(\001\d+)\{(.*)\1\}/$2/gs;
+    s/\\mathsf(\001\d+)\{(.*)\1\}/$2/gs;
+    s/\\mathbf(\001\d+)\{(.*)\1\}/<b>$2<\/b>/gs;
+    s/\\mathcal(\001\d+)\{(.*)\1\}/<i>$2<\/i>/gs;
+    s/\\mathit(\001\d+)\{(.*)\1\}/<i>$2<\/i>/gs;
+    s/\\mathtt(\001\d+)\{(.*)\1\}/<tt>$2<\/tt>/gs;
+    s/\\bibxhtmlname(\001\d+)\{(.*)\1\}/$2/ges;
+    sub domath {
+      local($t) = @_;
+      $t =~ s/\^(\001\d+)\{\\circ\1\}/\&\#176;/gs;
+      $t =~ s/\^\\circ/\&\#176;/g;
+      $t =~ s/\^(\001\d+)\{(.*)\1\}/<sup>$2<\/sup>/gs;
+      $t =~ s/\^(\w)/<sup>$1<\/sup>/g;
+      $t =~ s/\_(\001\d+)\{(.*)\1\}/<sub>$2<\/sub>/gs;
+      $t =~ s/\_(\w)/<sub>$1<\/sub>/g;
+      $t;
+    }
+    s/(\$([^\$]+)\$)/&domath($2)/ge;
+    s/(\\\((([^\\]|\\[^\(\)])+)\\\))/&domath($2)/ge;
+    s/\\mbox(\001\d+)\{(.*)\1\}/$2/gs;
+    while (s/(\<a href\=\"[^"]*?)\~/$1\005/g) { ; }
+    s/([^\\])~/$1&nbsp;/g;
+    s/\\\,/&thinsp;/g;
+    s/\\ldots\b/&hellip;/g;
+    s/\\dots\b/&hellip;/g;
+    s/\005/\~/g;
+    s/\\ / /g;
+    s/\\textasciitilde\b\s*/~/g;
+    s/\\([\#\&\%\~\_\^\|])/$1/g;
+    s/\\\W//g;
+    s/\001(\d+)\{\\[A-Za-z]+\001(\d+)\{([^\001]*)\001\2\}\001\1\}/$3/g;
+    s/\\([A-Za-z]+)/ $1 /g;
+    s+In <a href=\"[^\"]*\"></a>++;
+    s/\001\d+[\{\}]//gs;
+    tr/\002\003\004/{}$/;
+    print HTMLFILE $_;
+}
+close(BBLFILE);
+print HTMLFILE "<$list_end>\n\n$endstring\n";
+while (<OHTMLFILE>) {
+  print HTMLFILE;
+}
+close (OHTMLFILE);
+close(HTMLFILE);
+chmod($mode, "$htmlfile$$");
+rename("$htmlfile$$", $htmlfile);
+unlink(@tmpfiles);
+exit(0);

src/cite.h

@@ -61,8 +61,8 @@ class CiteDict
     /** Create the database, with an expected maximum of \a size entries */
     CiteDict(int size);
 
-    /** Resolve references to citations */
-    void resolve();
+//    /** Resolve references to citations */
+//    void resolve();
 
     /** Insert a citation identified by \a label into the database */
     void insert(const char *label);
@@ -87,13 +87,13 @@ class CiteDict
     void writeLatexBibliography(FTextStream &t);
 
   private:
-    bool writeAux();
-    bool writeBst();
-    bool execute();
-    void parse();
-    void clean();
+//    bool writeAux();
+//    bool writeBst();
+//    bool execute();
+//    void parse();
+//    void clean();
     QDict<CiteInfo> m_entries;
-    QList<QCString> m_ordering;
+//    QList<QCString> m_ordering;
     QCString m_baseFileName;
 };
 

src/classdef.cpp

@@ -175,6 +175,9 @@ class ClassDefImpl
     /** Is this a simple (non-nested) C structure? */
     bool isSimple;
 
+    /** Does this class overloaded the -> operator? */
+    MemberDef *arrowOperator;
+
     ClassList *taggedInnerClasses;
     ClassDef *tagLessRef;
 };
@@ -217,6 +220,7 @@ void ClassDefImpl::init(const char *defFileName, const char *name,
   categoryOf = 0;
   usedOnly = FALSE;
   isSimple = Config_getBool("INLINE_SIMPLE_STRUCTS");
+  arrowOperator = 0;
   taggedInnerClasses = 0;
   tagLessRef = 0;
   //QCString ns;
@@ -636,6 +640,11 @@ void ClassDef::internalInsertMember(MemberDef *md,
     m_impl->isAbstract=TRUE;
   }
 
+  if (md->name()=="operator->")
+  {
+    m_impl->arrowOperator=md;
+  }
+
   //::addClassMemberNameToIndex(md);
   if (addToAllList && 
       !(Config_getBool("HIDE_FRIEND_COMPOUNDS") &&
@@ -3175,8 +3184,35 @@ QCString ClassDef::compoundTypeString() const
   }
 }
 
-QCString ClassDef::getXmlOutputFileBase() const
-{
+QCString ClassDef::getOutputFileBase() const 
+{ 
+  if (!Doxygen::generatingXmlOutput)
+  {
+    static bool inlineGroupedClasses = Config_getBool("INLINE_GROUPED_CLASSES");
+    static bool inlineSimpleClasses = Config_getBool("INLINE_SIMPLE_STRUCTS");
+    Definition *scope=0;
+    if (inlineGroupedClasses && partOfGroups()!=0)
+    {
+      // point to the group that embeds this class
+      return partOfGroups()->at(0)->getOutputFileBase();
+    }
+    else if (inlineSimpleClasses && m_impl->isSimple && partOfGroups()!=0)
+    {
+      // point to simple struct inside a group
+      return partOfGroups()->at(0)->getOutputFileBase();
+    }
+    else if (inlineSimpleClasses && m_impl->isSimple && (scope=getOuterScope()))
+    {
+      if (scope==Doxygen::globalScope && getFileDef() && getFileDef()->isLinkableInProject()) // simple struct embedded in file
+      {
+        return getFileDef()->getOutputFileBase();
+      }
+      else if (scope->isLinkableInProject()) // simple struct embedded in other container (namespace/group/class)
+      {
+        return getOuterScope()->getOutputFileBase();
+      }
+    }
+  }
   if (m_impl->templateMaster)
   {
     // point to the template of which this class is an instance
@@ -3194,35 +3230,6 @@ QCString ClassDef::getXmlOutputFileBase() const
   }
 }
 
-QCString ClassDef::getOutputFileBase() const 
-{ 
-  static bool inlineGroupedClasses = Config_getBool("INLINE_GROUPED_CLASSES");
-  static bool inlineSimpleClasses = Config_getBool("INLINE_SIMPLE_STRUCTS");
-  Definition *scope=0;
-  if (inlineGroupedClasses && partOfGroups()!=0)
-  {
-    // point to the group that embeds this class
-    return partOfGroups()->at(0)->getOutputFileBase();
-  }
-  else if (inlineSimpleClasses && m_impl->isSimple && partOfGroups()!=0)
-  {
-    // point to simple struct inside a group
-    return partOfGroups()->at(0)->getOutputFileBase();
-  }
-  else if (inlineSimpleClasses && m_impl->isSimple && (scope=getOuterScope()))
-  {
-    if (scope==Doxygen::globalScope && getFileDef() && getFileDef()->isLinkableInProject()) // simple struct embedded in file
-    {
-      return getFileDef()->getOutputFileBase();
-    }
-    else if (scope->isLinkableInProject()) // simple struct embedded in other container (namespace/group/class)
-    {
-      return getOuterScope()->getOutputFileBase();
-    }
-  }
-  return getXmlOutputFileBase();
-}
-
 QCString ClassDef::getInstanceOutputFileBase() const 
 { 
   if (isReference())
@@ -3921,6 +3928,11 @@ bool ClassDef::isSimple() const
   return m_impl->isSimple;
 }
 
+MemberDef *ClassDef::isSmartPointer() const
+{
+  return m_impl->arrowOperator;
+}
+
 void ClassDef::reclassifyMember(MemberDef *md,MemberDef::MemberType t)
 {
   md->setMemberType(t);
@@ -3936,7 +3948,7 @@ void ClassDef::reclassifyMember(MemberDef *md,MemberDef::MemberType t)
 QCString ClassDef::anchor() const
 {
   QCString anc;
-  if (isEmbeddedInOuterScope())
+  if (isEmbeddedInOuterScope() && !Doxygen::generatingXmlOutput)
   {
     if (m_impl->templateMaster)
     {

src/classdef.h

@@ -95,8 +95,7 @@ class ClassDef : public Definition
     DefType definitionType() const { return TypeClass; }
 
     /*! Returns the unique base name (without extension) of the class's file on disk */
-    QCString getOutputFileBase() const; 
-    QCString getXmlOutputFileBase() const;
+    QCString getOutputFileBase() const;
     QCString getInstanceOutputFileBase() const; 
     QCString getFileBase() const;
 
@@ -272,6 +271,8 @@ class ClassDef : public Definition
     const ClassList *taggedInnerClasses() const;
     ClassDef *tagLessReference() const;
 
+    MemberDef *isSmartPointer() const;
+
     //-----------------------------------------------------------------------------------
     // --- setters ----
     //-----------------------------------------------------------------------------------

src/code.l

@@ -246,7 +246,7 @@ void VariableContext::addVariable(const QCString &type,const QCString &name)
          ( // look for class definitions inside the code block
 	   (varType=g_codeClassSDict->find(typeName)) ||
            // otherwise look for global class definitions
-           (varType=getResolvedClass(g_currentDefinition,g_sourceFileDef,typeName))
+           (varType=getResolvedClass(g_currentDefinition,g_sourceFileDef,typeName,0,0,TRUE,TRUE))
 	 ) && // and it must be a template
          varType->templateArguments())
     {
@@ -477,7 +477,8 @@ static void startCodeLine()
       //printf("->startCodeLine(%s)=%p\n",d->name().data(),g_currentMemberDef);
       g_insideBody = FALSE;
       g_searchingForBody = TRUE;
-      g_realScope = d->name().copy();
+      g_realScope = d->name();
+      //g_classScope = "";
       g_type.resize(0);
       g_name.resize(0);
       g_args.resize(0);
@@ -724,7 +725,7 @@ static MemberDef *setCallContextForVar(const QCString &name)
   ClassDef *mcd = g_theVarContext.findVariable(name);
   if (mcd) // local variable
   {
-    //fprintf(stderr,"local variable\n");
+    //fprintf(stderr,"local variable?\n");
     if (mcd!=VariableContext::dummyContext)
     {
       //fprintf(stderr,"local var `%s' mcd=%s\n",name.data(),mcd->name().data());
@@ -733,6 +734,7 @@ static MemberDef *setCallContextForVar(const QCString &name)
   }
   else
   {
+    //fprintf(stderr,"class member? scope=%s\n",g_classScope.data());
     // look for a class member 
     mcd = getClass(g_classScope);
     if (mcd)
@@ -792,6 +794,22 @@ static MemberDef *setCallContextForVar(const QCString &name)
   return 0;
 }
 
+static void updateCallContextForSmartPointer()
+{
+  ClassDef *cd = g_theCallContext.getClass();
+  //printf("updateCallContextForSmartPointer() cd=%s\n",cd ? cd->name().data() : "<none>");
+  MemberDef *md;
+  if (cd && (md=cd->isSmartPointer()))
+  {
+    ClassDef *ncd = stripClassName(md->typeString());
+    if (ncd)
+    {
+      g_theCallContext.setClass(ncd);
+      //printf("Found smart pointer call %s->%s!\n",cd->name().data(),ncd->name().data());
+    }
+  }
+}
+
 static void addDocCrossReference(MemberDef *src,MemberDef *dst)
 {
   static bool referencedByRelation = Config_getBool("REFERENCED_BY_RELATION");
@@ -942,11 +960,11 @@ static void generateClassOrGlobalLink(CodeOutputInterface &ol,char *clName,
   if ((lcd=g_theVarContext.findVariable(className))==0) // not a local variable
   {
     Definition *d = g_currentDefinition;
-    //printf("d=%p g_sourceFileDef=%p\n",d,g_currentDefinition);
+    //printf("d=%s g_sourceFileDef=%s\n",d?d->name().data():"<none>",g_sourceFileDef?g_sourceFileDef->name().data():"<none>");
     cd = getResolvedClass(d,g_sourceFileDef,className,&md);
     //fprintf(stderr,"non-local variable name=%s context=%d cd=%s md=%s!\n",
     //	className.data(),g_theVarContext.count(),cd?cd->name().data():"<none>",
-    //	md?md->name().data():"<none>");
+    //    md?md->name().data():"<none>");
     if (cd==0 && md==0 && (i=className.find('<'))!=-1)
     {
       QCString bareName = className.left(i); //stripTemplateSpecifiersFromScope(className);
@@ -2501,6 +2519,10 @@ OPERATOR {ARITHOP}|{ASSIGNOP}|{LOGICOP}|{BITOP}
 					  endFontClass();
   					}
 <Body>"."|"->"				{ 
+  				          if (yytext[0]=='-') // -> could be overloaded
+					  {
+					    updateCallContextForSmartPointer();
+					  }
   					  g_code->codify(yytext);
 					  g_memCallContext = YY_START;
   					  BEGIN( MemberCall ); 
@@ -3007,6 +3029,10 @@ OPERATOR {ARITHOP}|{ASSIGNOP}|{LOGICOP}|{BITOP}
 					  BEGIN( MemberCall2 ); 
     					}
 <MemberCall2>"->"|"."			{
+  				          if (yytext[0]=='-') // -> could be overloaded
+					  {
+					    updateCallContextForSmartPointer();
+					  }
   					  g_code->codify(yytext);
 					  g_memCallContext = YY_START;
   					  BEGIN( MemberCall ); 

src/commentscan.l

@@ -825,6 +825,7 @@ FILEECHAR [a-z_A-Z0-9\x80-\xFF\-\+]
 FILE      ({FILESCHAR}*{FILEECHAR}+("."{FILESCHAR}*{FILEECHAR}+)*)|("\""[^\n\"]*"\"")
 ID        "$"?[a-z_A-Z\x80-\xFF][a-z_A-Z0-9\x80-\xFF]*
 LABELID   [a-z_A-Z\x80-\xFF][a-z_A-Z0-9\x80-\xFF\-]*
+CITEID    [a-z_A-Z\x80-\xFF][a-z_A-Z0-9\x80-\xFF\-:/]*
 SCOPEID   {ID}({ID}*{BN}*"::"{BN}*)*({ID}?)
 SCOPENAME "$"?(({ID}?{BN}*("::"|"."){BN}*)*)((~{BN}*)?{ID})
 MAILADR   [a-z_A-Z0-9.+\-]+"@"[a-z_A-Z0-9\-]+("."[a-z_A-Z0-9\-]+)+[a-z_A-Z0-9\-]+ 
@@ -1966,7 +1967,7 @@ RCSTAG    "$"{ID}":"[^\n$]+"$"
 
   /* ----- handle arguments of the cite command ------- */
 
-<CiteLabel>{LABELID}			{ // found argyment
+<CiteLabel>{CITEID}			{ // found argyment
   					  addCite();
                                           addOutput(yytext);
 					  BEGIN(Comment);

src/config.xml

@@ -10,7 +10,7 @@ http://www.gnu.org/software/libiconv for the list of possible encodings.
     <option type='string' id='PROJECT_NAME' format='string' docs='
 The PROJECT_NAME tag is a single word (or sequence of words) that should 
 identify the project. Note that if you do not use Doxywizard you need 
-to put quotes around the project name if it contains spaces.' defval=''/>
+to put quotes around the project name if it contains spaces.' defval='My Project'/>
     <option type='string' id='PROJECT_NUMBER' format='string' docs='
 The PROJECT_NUMBER tag can be used to enter a project or revision number. 
 This could be handy for archiving the generated documentation or 
@@ -530,7 +530,8 @@ containing the references data. This must be a list of .bib files. The
 .bib extension is automatically appended if omitted. Using this command 
 requires the bibtex tool to be installed. See also 
 http://en.wikipedia.org/wiki/BibTeX for more info. For LaTeX the style 
-of the bibliography can be controlled using LATEX_BIB_STYLE. 
+of the bibliography can be controlled using LATEX_BIB_STYLE. To use this
+feature you need bibtex and perl available in the search path. 
 ' defval=''/>
   </group>
   <group name='Messages' docs='configuration options related to warning and progress messages'>
@@ -1010,12 +1011,6 @@ the value YES disables it. Since the tabs have the same information as the
 navigation tree you can set this option to NO if you already set 
 GENERATE_TREEVIEW to YES.
 ' defval='0' depends='GENERATE_HTML'/>
-    <option type='int' id='ENUM_VALUES_PER_LINE' docs='
-The ENUM_VALUES_PER_LINE tag can be used to set the number of enum values 
-(range [0,1..20]) that doxygen will group on one line in the generated HTML 
-documentation. Note that a value of 0 will completely suppress the enum 
-values from appearing in the overview section.
-' minval='0' maxval='20' defval='4' depends='GENERATE_HTML'/>
     <option type='bool' id='GENERATE_TREEVIEW' defval='0' docs='
 The GENERATE_TREEVIEW tag is used to specify whether a tree-like index 
 structure should be generated to display hierarchical information. 
@@ -1027,6 +1022,12 @@ Windows users are probably better off using the HTML help feature.
 Since the tree basically has the same information as the tab index you 
 could consider to set DISABLE_INDEX to NO when enabling this option.
 ' depends='GENERATE_HTML'/>
+    <option type='int' id='ENUM_VALUES_PER_LINE' docs='
+The ENUM_VALUES_PER_LINE tag can be used to set the number of enum values 
+(range [0,1..20]) that doxygen will group on one line in the generated HTML 
+documentation. Note that a value of 0 will completely suppress the enum 
+values from appearing in the overview section.
+' minval='0' maxval='20' defval='4' depends='GENERATE_HTML'/>
     <option type='bool' id='USE_INLINE_TREES' defval='0' docs='
 By enabling USE_INLINE_TREES, doxygen will generate the Groups, Directories, 
 and Class Hierarchy pages using a tree view instead of an ordered list.

src/configoptions.cpp

@@ -36,6 +36,7 @@ void addConfigOptions(Config *cfg)
                  "identify the project. Note that if you do not use Doxywizard you need\n"
                  "to put quotes around the project name if it contains spaces."
                 );
+  cs->setDefaultValue("My Project");
   //----
   cs = cfg->addString(
                  "PROJECT_NUMBER",
@@ -761,7 +762,7 @@ void addConfigOptions(Config *cfg)
                  ".bib extension is automatically appended if omitted. Using this command\n"
                  "requires the bibtex tool to be installed. See also\n"
                  "http://en.wikipedia.org/wiki/BibTeX for more info. For LaTeX the style\n"
-                 "of the bibliography can be controlled using LATEX_BIB_STYLE."
+                 "of the bibliography can be controlled using LATEX_BIB_STYLE. To use this feature you need bibtex and perl available in the search path."
                 );
   cl->setWidgetType(ConfigList::File);
   //---------------------------------------------------------------------------
@@ -1483,16 +1484,6 @@ void addConfigOptions(Config *cfg)
                 );
   cb->addDependency("GENERATE_HTML");
   //----
-  ci = cfg->addInt(
-                 "ENUM_VALUES_PER_LINE",
-                 "The ENUM_VALUES_PER_LINE tag can be used to set the number of enum values\n"
-                 "(range [0,1..20]) that doxygen will group on one line in the generated HTML\n"
-                 "documentation. Note that a value of 0 will completely suppress the enum\n"
-                 "values from appearing in the overview section.",
-                 0,20,4
-                );
-  ci->addDependency("GENERATE_HTML");
-  //----
   cb = cfg->addBool(
                  "GENERATE_TREEVIEW",
                  "The GENERATE_TREEVIEW tag is used to specify whether a tree-like index\n"
@@ -1508,6 +1499,16 @@ void addConfigOptions(Config *cfg)
                 );
   cb->addDependency("GENERATE_HTML");
   //----
+  ci = cfg->addInt(
+                 "ENUM_VALUES_PER_LINE",
+                 "The ENUM_VALUES_PER_LINE tag can be used to set the number of enum values\n"
+                 "(range [0,1..20]) that doxygen will group on one line in the generated HTML\n"
+                 "documentation. Note that a value of 0 will completely suppress the enum\n"
+                 "values from appearing in the overview section.",
+                 0,20,4
+                );
+  ci->addDependency("GENERATE_HTML");
+  //----
   cb = cfg->addBool(
                  "USE_INLINE_TREES",
                  "By enabling USE_INLINE_TREES, doxygen will generate the Groups, Directories,\n"

src/definition.h

@@ -132,6 +132,9 @@ class Definition : public DefinitionIntf, public LockableObj
      */
     virtual QCString getOutputFileBase() const = 0;
 
+    /*! Returns the anchor within a page where this item can be found */
+    virtual QCString anchor() const = 0;
+
     /*! Returns the name of the source listing of this file. */
     virtual QCString getSourceFileBase() const { ASSERT(0); return "NULL"; }
 

src/dirdef.h

@@ -49,10 +49,11 @@ class DirDef : public Definition
     virtual ~DirDef();
 
     // accessors
-    virtual DefType definitionType() const { return TypeDir; }
-    virtual QCString getOutputFileBase() const;
-    virtual bool isLinkableInProject() const;
-    virtual bool isLinkable() const;
+    DefType definitionType() const { return TypeDir; }
+    QCString getOutputFileBase() const;
+    QCString anchor() const { return QCString(); }
+    bool isLinkableInProject() const;
+    bool isLinkable() const;
     QCString displayName() const { return m_dispName; }
     QCString shortName() const { return m_shortName; }
     void addSubDir(DirDef *subdir);

src/docparser.cpp

@@ -1043,7 +1043,7 @@ static void handleLinkedWord(DocNode *parent,QList<DocNode> &children)
     }
     else if (compound->isLinkable()) // compound link
     {
-      QCString anchor;
+      QCString anchor = compound->anchor();
       if (compound->definitionType()==Definition::TypeFile)
       {
         name=g_token->name;
@@ -1052,10 +1052,6 @@ static void handleLinkedWord(DocNode *parent,QList<DocNode> &children)
       {
         name=((GroupDef*)compound)->groupTitle();
       }
-      else if (compound->definitionType()==Definition::TypeClass)
-      {
-        anchor=((ClassDef*)compound)->anchor();
-      }
       children.append(new 
           DocLinkedWord(parent,name,
                         compound->getReference(),
@@ -1700,7 +1696,7 @@ DocAnchor::DocAnchor(DocNode *parent,const QCString &id,bool newAnchor)
     CiteInfo *cite = Doxygen::citeDict->find(id.mid(CiteConsts::anchorPrefix.length()));
     if (cite) 
     {
-      m_file = CiteConsts::fileName;
+      m_file = convertNameToFile(CiteConsts::fileName,FALSE,TRUE);
       m_anchor = id;
     }
     else 
@@ -2422,7 +2418,7 @@ DocCite::DocCite(DocNode *parent,const QCString &target,const QCString &) //cont
   static uint numBibFiles = Config_getList("CITE_BIB_FILES").count();
   m_parent = parent; 
   QCString     anchor;
-  //printf("DocCite::DocCite(target=%s,context=%s\n",target.data(),context.data());
+  //printf("DocCite::DocCite(target=%s)\n",target.data());
   ASSERT(!target.isEmpty());
   m_relPath = g_relPath;
   CiteInfo *cite = Doxygen::citeDict->find(target);
@@ -2432,7 +2428,7 @@ DocCite::DocCite(DocNode *parent,const QCString &target,const QCString &) //cont
     if (m_text.isEmpty()) m_text = cite->label;
     m_ref          = cite->ref;
     m_anchor       = CiteConsts::anchorPrefix+cite->label;
-    m_file         = CiteConsts::fileName;
+    m_file         = convertNameToFile(CiteConsts::fileName,FALSE,TRUE);
     //printf("CITE ==> m_text=%s,m_ref=%s,m_file=%s,m_anchor=%s\n",
     //    m_text.data(),m_ref.data(),m_file.data(),m_anchor.data());
     return;
@@ -3660,6 +3656,13 @@ int DocHtmlDescTitle::parse()
               retval=RetVal_EndDesc;
               goto endtitle;
             }
+            else if (tagId==HTML_A)
+            {
+              if (!g_token->endTag)
+              {
+                handleAHref(this,m_children,g_token->attribs);
+              }
+            }
             else
             {
               warn_doc_error(g_fileName,doctokenizerYYlineno,"warning: Unexpected html tag <%s%s> found within <dt> context",
@@ -4500,6 +4503,7 @@ void DocPara::handleCite()
         qPrint("cite"));
     return;
   }
+  doctokenizerYYsetStateCite();
   tok=doctokenizerYYlex();
   if (tok==0)
   {
@@ -4514,7 +4518,6 @@ void DocPara::handleCite()
     return;
   }
   g_token->sectionId = g_token->name;
-  doctokenizerYYsetStateCite();
   DocCite *cite = new DocCite(this,g_token->name,g_context);
   m_children.append(cite);
   //cite->parse();

src/doctokenizer.l

@@ -334,12 +334,12 @@ LNKWORD1  ("::"|"#")?{SCOPEMASK}
 CVSPEC    {BLANK}*("const"|"volatile")
 LNKWORD2  (({SCOPEPRE}*"operator"{OPMASK})|({SCOPEPRE}"operator"{OPMASKOPT})|(("::"|"#"){SCOPEPRE}*"operator"{OPMASKOPT})){CVSPEC}?
 LNKWORD3  ([0-9a-z_A-Z\-]+("/"|"\\"))*[0-9a-z_A-Z\-]+("."[0-9a-z_A-Z]+)+
-CHARWORDQ [^ \t\n\r\\@<>()\[\]:;\?{}&%$#,."=]
-ESCWORD   "%"{ID}(("::"|"."){ID})*
+CHARWORDQ [^ \t\n\r\\@<>()\[\]:;\?{}&%$#,."=']
+ESCWORD   ("%"{ID}(("::"|"."){ID})*)|("%'")
 WORD1     {ESCWORD}|{CHARWORDQ}+|"{"|"}"|"'\"'"|("\""[^"\n]*\n?[^"\n]*"\"")
-WORD2     "."|","|"("|")"|"["|"]"|":"|";"|"\?"|"="
+WORD2     "."|","|"("|")"|"["|"]"|":"|";"|"\?"|"="|"'"
 WORD1NQ   {ESCWORD}|{CHARWORDQ}+|"{"|"}"
-WORD2NQ   "."|","|"("|")"|"["|"]"|":"|";"|"\?"|"="
+WORD2NQ   "."|","|"("|")"|"["|"]"|":"|";"|"\?"|"="|"'"
 HTMLTAG   "<"(("/")?){ID}({WS}+{ATTRIB})*{WS}*(("/")?)">" 
 HTMLKEYL  "strong"|"center"|"table"|"caption"|"small"|"code"|"dfn"|"var"|"img"|"pre"|"sub"|"sup"|"tr"|"td"|"th"|"ol"|"ul"|"li"|"tt"|"kbd"|"em"|"hr"|"dl"|"dt"|"dd"|"br"|"i"|"a"|"b"|"p"
 HTMLKEYU  "STRONG"|"CENTER"|"TABLE"|"CAPTION"|"SMALL"|"CODE"|"DFN"|"VAR"|"IMG"|"PRE"|"SUB"|"SUP"|"TR"|"TD"|"TH"|"OL"|"UL"|"LI"|"TT"|"KBD"|"EM"|"HR"|"DL"|"DT"|"DD"|"BR"|"I"|"A"|"B"|"P"

src/doxygen.cpp

@@ -149,6 +149,7 @@ IndexList        Doxygen::indexList;
 int              Doxygen::subpageNestingLevel = 0;
 bool             Doxygen::userComments = FALSE;
 QCString         Doxygen::spaces;
+bool             Doxygen::generatingXmlOutput = FALSE;
 
 // locally accessible globals
 static QDict<EntryNav>  g_classEntries(1009);
@@ -252,8 +253,11 @@ static STLInfo g_stlinfo[] =
 {
   // className              baseClass1                      baseClass2             templType1     templName1     templType2    templName2     virtInheritance  // iterators
   { "allocator",            0,                              0,                     "T",           "elements",    0,            0,             FALSE,              FALSE },
-  { "auto_ptr",             0,                              0,                     "T",           "ptr",         0,            0,             FALSE,              FALSE },
-  { "ios_base",             0,                              0,                     0,             0,             0,            0,             FALSE,              FALSE },
+  { "auto_ptr",             0,                              0,                     "T",           "ptr",         0,            0,             FALSE,              FALSE }, // deprecated
+  { "smart_ptr",            0,                              0,                     "T",           "ptr",         0,            0,             FALSE,              FALSE }, // C++11
+  { "unique_ptr",           0,                              0,                     "T",           "ptr",         0,            0,             FALSE,              FALSE }, // C++11
+  { "weak_ptr",             0,                              0,                     "T",           "ptr",         0,            0,             FALSE,              FALSE }, // C++11
+  { "ios_base",             0,                              0,                     0,             0,             0,            0,             FALSE,              FALSE }, // C++11
   { "basic_ios",            "ios_base",                     0,                     "Char",        0,             0,            0,             FALSE,              FALSE },
   { "basic_istream",        "basic_ios<Char>",              0,                     "Char",        0,             0,            0,             TRUE,               FALSE },
   { "basic_ostream",        "basic_ios<Char>",              0,                     "Char",        0,             0,            0,             TRUE,               FALSE },
@@ -321,7 +325,7 @@ static void addSTLMember(EntryNav *rootNav,const char *type,const char *name)
   Entry *memEntry = new Entry;
   memEntry->name       = name;
   memEntry->type       = type;
-  memEntry->protection = Private;
+  memEntry->protection = Public;
   memEntry->section    = Entry::VARIABLE_SEC;
   memEntry->brief      = "STL member";
   memEntry->hidden     = FALSE; 
@@ -415,6 +419,22 @@ static void addSTLClasses(EntryNav *rootNav)
     {
       addSTLMember(classEntryNav,info->templType2,info->templName2);
     }
+    if (fullName=="std::auto_ptr" || fullName=="std::smart_ptr" ||
+        fullName=="std::unique_ptr" || fullName=="std::weak_ptr")
+    {
+      Entry *memEntry = new Entry;
+      memEntry->name       = "operator->";
+      memEntry->args       = "()";
+      memEntry->type       = "T*";
+      memEntry->protection = Public;
+      memEntry->section    = Entry::FUNCTION_SEC;
+      memEntry->brief      = "STL member";
+      memEntry->hidden     = FALSE; 
+      memEntry->artificial = FALSE;
+      EntryNav *memEntryNav = new EntryNav(classEntryNav,memEntry);
+      memEntryNav->setEntry(memEntry);
+      classEntryNav->addChild(memEntryNav);
+    }
     if (info->baseClass1)
     {
       classEntry->extends->append(new BaseInfo(info->baseClass1,Public,info->virtualInheritance?Virtual:Normal));
@@ -10561,8 +10581,8 @@ void parseInput()
     computeDirDependencies();
   }
 
-  msg("Resolving citations...\n");
-  Doxygen::citeDict->resolve();
+  //msg("Resolving citations...\n");
+  //Doxygen::citeDict->resolve();
 
   msg("Generating citations page...\n");
   Doxygen::citeDict->generatePage();
@@ -10853,7 +10873,9 @@ void generateOutput()
   if (Config_getBool("GENERATE_XML"))
   {
     msg("Generating XML output...\n");
+    Doxygen::generatingXmlOutput=TRUE;
     generateXML();
+    Doxygen::generatingXmlOutput=FALSE;
   }
   if (Config_getBool("GENERATE_AUTOGEN_DEF"))
   {

src/doxygen.h

@@ -133,6 +133,7 @@ class Doxygen
     static IndexList                 indexList;
     static int                       subpageNestingLevel;
     static QCString                  spaces;
+    static bool                      generatingXmlOutput;
 };
 
 void initDoxygen();

src/filedef.cpp

@@ -1503,7 +1503,7 @@ bool FileDef::isDocumentationFile() const
 void FileDef::acquireFileVersion()
 {
   QCString vercmd = Config_getString("FILE_VERSION_FILTER");
-  if (!vercmd.isEmpty() && filepath!="generated") 
+  if (!vercmd.isEmpty() && !filepath.isEmpty() && filepath!="generated") 
   {
     msg("Version of %s : ",filepath.data());
     QCString cmd = vercmd+" \""+filepath+"\"";
@@ -1518,9 +1518,8 @@ void FileDef::acquireFileVersion()
     char buf[bufSize];
     int numRead = fread(buf,1,bufSize,f);
     portable_pclose(f);
-    if (numRead > 0) 
+    if (numRead>0 && !(fileVersion=QCString(buf,numRead).stripWhiteSpace()).isEmpty())
     {
-      fileVersion = QCString(buf,numRead).stripWhiteSpace();
       msg("%s\n",fileVersion.data());
     }
     else 
@@ -1650,6 +1649,7 @@ bool FileDef::isLinkableInProject() const
   return hasDocumentation() && !isReference() && showFiles;
 }
 
+#if 0
 bool FileDef::includes(FileDef *incFile,QDict<FileDef> *includedFiles) const
 {
   //printf("%s::includes(%s)\n",name().data(),incFile->name().data());
@@ -1687,4 +1687,4 @@ bool FileDef::includesByName(const QCString &fileName) const
   }
   return FALSE;
 }
-
+#endif

src/filedef.h

@@ -88,6 +88,8 @@ class FileDef : public Definition
     
     QCString getOutputFileBase() const 
     { return convertNameToFile(diskname); }
+    QCString anchor() const
+    { return QCString(); }
 
     QCString getFileBase() const
     { return diskname; }
@@ -168,8 +170,8 @@ class FileDef : public Definition
 
     void addListReferences();
     bool isDocumentationFile() const;
-    bool includes(FileDef *incFile,QDict<FileDef> *includedFiles) const;
-    bool includesByName(const QCString &name) const;
+    //bool includes(FileDef *incFile,QDict<FileDef> *includedFiles) const;
+    //bool includesByName(const QCString &name) const;
 
     MemberList *getMemberList(MemberList::ListType lt) const;
     const QList<MemberList> &getMemberLists() const { return m_memberLists; }

src/fortranscanner.l

@@ -202,7 +202,7 @@ static void scanner_abort();
 static void startScope(Entry *scope);
 static bool endScope(Entry *scope, bool isGlobalRoot=FALSE);
 static QCString getFullName(Entry *e);
-static bool isTypeName(QCString name);
+//static bool isTypeName(QCString name);
 static void resolveModuleProcedures(QList<Entry> &moduleProcedures, Entry *current_root);
 static int getAmpersandAtTheStart(const char *buf, int length);
 static int getAmpOrExclAtTheEnd(const char *buf, int length);
@@ -669,10 +669,11 @@ private                                 {
 					  argType = QCString(yytext).simplifyWhiteSpace();
 					  yy_push_state(AttributeList);
                                         }
-^{BS}{PP_ID}{KIND}?			{ /* check for preprocessor symbol expand to type */
+  /*  Dimitri: macro expansion should already be done during preprocessing not here!
+^{BS}{PP_ID}{KIND}?			{ // check for preprocessor symbol expand to type
 					  QCString str = yytext;
 					  str = str.stripWhiteSpace();
-					  DefineDict* defines = getGlobalDefineDict();
+					  //DefineDict* defines = getGlobalDefineDict();
 					  QCString name;
 					  int index = str.find("(");
 					  if (index != -1)
@@ -680,7 +681,7 @@ private                                 {
 					  else
 					    name = str;
 
-					  Define *define = (*defines)[name];
+					  Define *define = 0; //(*defines)[name];
 					  if (define != 0 && isTypeName(define->definition)) 
 					  {
 					    argType = str;
@@ -692,6 +693,7 @@ private                                 {
 					    REJECT;
 					  }
 					}
+  */
 {ATTR_STMT}/{BS_}{ID}		       |
 {ATTR_STMT}/{BS}"::"                   { 
                                           /* attribute statement starts */
@@ -1406,12 +1408,14 @@ void resolveModuleProcedures(QList<Entry> &moduleProcedures, Entry *current_root
   moduleProcedures.clear();
 }
 
+#if 0
 static bool isTypeName(QCString name)
 {
   name = name.lower();
   return name=="integer" || name == "real" || 
-    name=="complex" || name == "logical";
+         name=="complex" || name == "logical";
 }
+#endif
 
 /*! Extracts string which resides within parentheses of provided string. */
 static QCString extractFromParens(const QCString name)

src/groupdef.h

@@ -48,6 +48,7 @@ class GroupDef : public Definition
    ~GroupDef();
     DefType definitionType() const { return TypeGroup; }
     QCString getOutputFileBase() const;
+    QCString anchor() const { return QCString(); }
     const char *groupTitle() const { return title; }
     void setGroupTitle( const char *newtitle );
     bool hasGroupTitle( ) { return titleSet; }

src/htmldocvisitor.cpp

@@ -1408,32 +1408,30 @@ void HtmlDocVisitor::visitPre(DocParamSect *s)
 {
   if (m_hide) return;
   forceEndParagraph(s);
-  m_t << "<dl><dt><b>";
   QCString className;
+  QCString heading;
   switch(s->type())
   {
     case DocParamSect::Param: 
-      m_t << theTranslator->trParameters(); 
+      heading=theTranslator->trParameters(); 
       className="params";
       break;
     case DocParamSect::RetVal: 
-      m_t << theTranslator->trReturnValues(); 
+      heading=theTranslator->trReturnValues(); 
       className="retval";
       break;
     case DocParamSect::Exception: 
-      m_t << theTranslator->trExceptions(); 
+      heading=theTranslator->trExceptions(); 
       className="exception";
       break;
     case DocParamSect::TemplateParam: 
-      /* TODO: add this 
-      m_t << theTranslator->trTemplateParam(); break;
-      */
-      m_t << "Template Parameters"; break;
+      heading="Template Parameters"; break; // TODO: translate me
       className="tparams";
     default:
       ASSERT(0);
   }
-  m_t << ":";
+  m_t << "<dl class=\"" << className << "\"><dt><b>";
+  m_t << heading << ":";
   m_t << "</b></dt><dd>" << endl;
   m_t << "  <table class=\"" << className << "\">" << endl;
 }
@@ -1698,7 +1696,8 @@ void HtmlDocVisitor::writeDotFile(const QCString &fn,const QCString &relPath,
   writeDotImageMapFromFile(m_t,fn,outDir,relPath,baseName,context);
 }
 
-void HtmlDocVisitor::writeMscFile(const QCString &fileName,const QCString &relPath,
+void HtmlDocVisitor::writeMscFile(const QCString &fileName,
+                                  const QCString &relPath,
                                   const QCString &context)
 {
   QCString baseName=fileName;

src/latexdocvisitor.cpp

@@ -1512,8 +1512,7 @@ void LatexDocVisitor::startMscFile(const QCString &fileName,
   baseName.prepend("msc_");
 
   QCString outDir = Config_getString("LATEX_OUTPUT");
-  QCString name = fileName;
-  writeMscGraphFromFile(name,outDir,baseName,MSC_EPS); 
+  writeMscGraphFromFile(fileName,outDir,baseName,MSC_EPS); 
   if (hasCaption)
   {
     m_t << "\n\\begin{DoxyImage}\n";
@@ -1568,7 +1567,7 @@ void LatexDocVisitor::writeMscFile(const QCString &baseName)
     shortName=shortName.right(shortName.length()-i-1);
   } 
   QCString outDir = Config_getString("LATEX_OUTPUT");
-  writeMscGraphFromFile(baseName,outDir,shortName,MSC_EPS);
+  writeMscGraphFromFile(baseName+".msc",outDir,shortName,MSC_EPS);
   m_t << "\n\\begin{DoxyImageNoCaption}"
          "  \\mbox{\\includegraphics";
   m_t << "{" << shortName << "}";

src/latexgen.cpp

@@ -701,6 +701,7 @@ static void writeDefaultStyleSheetPart3(FTextStream &t)
        "    \\begin{longtable}{|>{\\raggedleft\\hspace{0pt}}p{0.15\\textwidth}|%\n"
        "                         p{0.15\\textwidth}|%\n"
        "                         p{0.635\\textwidth}|}%\n"
+       //"\\hline{\\sf\\textbf{Type}} & {\\sf\\textbf{Name}} & {\\sf\\textbf{Description}}\\endhead%\n"
        "    \\hline%\n"
        "}{%\n"
        "    \\end{longtable}%\n"
@@ -1772,7 +1773,7 @@ void LatexGenerator::startDoxyAnchor(const char *fName,const char *,
     t << "\\hypertarget{";
     if (fName) t << stripPath(fName);
     if (anchor) t << "_" << anchor;
-    t << "}{" << endl;
+    t << "}{";
   }
 }
 
@@ -1782,7 +1783,7 @@ void LatexGenerator::endDoxyAnchor(const char *fName,const char *anchor)
   static bool usePDFLatex   = Config_getBool("USE_PDFLATEX");
   if (usePDFLatex && pdfHyperlinks)
   {
-    t << "}" << endl;
+    t << "}";
   }
   t << "\\label{";
   if (fName) t << fName;
@@ -2112,19 +2113,23 @@ void LatexGenerator::endMemberList()
 void LatexGenerator::startMemberGroupHeader(bool hasHeader)
 {
   if (hasHeader) t << "\\begin{Indent}";
-  if (Config_getBool("COMPACT_LATEX")) 
-  {
-    t << "\\subparagraph*{";
-  }
-  else
-  {
-    t << "\\paragraph*{";
-  }
+  t << "{\\bf ";
+  // changed back to rev 756 due to bug 660501
+  //if (Config_getBool("COMPACT_LATEX")) 
+  //{
+  //  t << "\\subparagraph*{";
+  //}
+  //else
+  //{
+  //  t << "\\paragraph*{";
+  //}
 }
 
 void LatexGenerator::endMemberGroupHeader()
 {
-  t << "}" << endl;
+  // changed back to rev 756 due to bug 660501
+  t << "}\\par" << endl;
+  //t << "}" << endl;
 }
 
 void LatexGenerator::startMemberGroupDocs()

src/libdoxygen.pro.in

@@ -258,7 +258,6 @@ win32:TMAKE_CXXFLAGS       += -DQT_NODLL
 win32-msvc:TMAKE_CXXFLAGS  += -Zm200
 win32-g++:TMAKE_CXXFLAGS   += -fno-exceptions -fno-rtti
 linux-g++:TMAKE_CXXFLAGS    += -fno-exceptions -fno-rtti
-TMAKE_CXXFLAGS += -DYY_TYPEDEF_YY_SIZE_T -Dyy_size_t=int
 INCLUDEPATH                += ../qtools
 #INCLUDEPATH                += ../libpng
 INCLUDEPATH                += ../libmd5

src/libdoxygen.t

@@ -164,3 +164,7 @@ svgpan_js.h: svgpan.js
 doxygen_bst.h: doxygen.bst
 	cat doxygen.bst | $(TO_C_CMD) >doxygen_bst.h
 
+bib2xhtml.h: bib2xhtml.pl
+	cat bib2xhtml.pl | $(TO_C_CMD) >bib2xhtml.h
+
+

src/memberdef.cpp

@@ -2522,7 +2522,7 @@ void MemberDef::writeDocumentation(MemberList *ml,OutputList &ol,
 }
 
 // strip scope and field name from the type
-// example: "struct N::S.v.c" will become "struct S.v"
+// example: "struct N::S.v.c" will become "struct v"
 static QCString simplifyTypeForTable(const QCString &s)
 {
   QCString ts=removeAnonymousScopes(s);
@@ -2535,6 +2535,9 @@ static QCString simplifyTypeForTable(const QCString &s)
   }
   i=ts.findRev('.');
   if (i!=-1) ts = ts.left(i);
+  i=ts.findRev('.');
+  if (i!=-1) ts = ts.right(ts.length()-i-1);
+  //printf("simplifyTypeForTable(%s)->%s\n",s.data(),ts.data());
   return ts;
 }
 

src/namespacedef.h

@@ -43,6 +43,7 @@ class NamespaceDef : public Definition
    ~NamespaceDef();
     DefType definitionType() const { return TypeNamespace; }
     QCString getOutputFileBase() const;
+    QCString anchor() const { return QCString(); }
     void insertUsedFile(const char *fname);
     
     void writeDocumentation(OutputList &ol);

src/pagedef.h

@@ -39,6 +39,7 @@ class PageDef : public Definition
 
     // functions to get a uniform interface with Definitions
     QCString getOutputFileBase() const;
+    QCString anchor() const { return QCString(); }
     void findSectionsInDocumentation();
     QCString title() const { return m_title; }
     GroupDef *  getGroupDef() const;

src/portable.cpp

@@ -121,6 +121,14 @@ int  portable_system(const char *command,const char *args,bool commandHasConsole
   }
   else
   {
+    // Because ShellExecuteEx can delegate execution to Shell extensions 
+    // (data sources, context menu handlers, verb implementations) that 
+    // are activated using Component Object Model (COM), COM should be 
+    // initialized before ShellExecuteEx is called. Some Shell extensions 
+    // require the COM single-threaded apartment (STA) type. 
+    // For that case COM is initialized as follows
+    CoInitializeEx(NULL, COINIT_APARTMENTTHREADED | COINIT_DISABLE_OLE1DDE);
+
     // gswin32 is a GUI api which will pop up a window and run
     // asynchronously. To prevent both, we use ShellExecuteEx and
     // WaitForSingleObject (thanks to Robert Golias for the code)

src/pre.h

@@ -24,7 +24,6 @@
 
 class BufStr;
 
-DefineDict* getGlobalDefineDict();
 void initPreprocessor();
 void cleanUpPreprocessor();
 void addSearchDir(const char *dir);

src/pycode.l

@@ -730,10 +730,9 @@ static bool findMemberLink(CodeOutputInterface &ol,Definition *sym,const char *s
   {
     ClassDef *cd = (ClassDef*)sym->getOuterScope();
     ClassDef *thisCd = (ClassDef *)g_currentDefinition;
-    QCString anchor;
+    QCString anchor=sym->anchor();
     if (sym->definitionType()==Definition::TypeMember)
     {
-      anchor=((MemberDef *)sym)->anchor();
       if (g_currentMemberDef)
       {
 	addDocCrossReference(g_currentMemberDef,(MemberDef*)sym);

src/rtfdocvisitor.cpp

@@ -1672,7 +1672,7 @@ void RTFDocVisitor::writeMscFile(const QCString &fileName)
     baseName=baseName.right(baseName.length()-i-1);
   } 
   QCString outDir = Config_getString("RTF_OUTPUT");
-  writeMscGraphFromFile(fileName,outDir,baseName,MSC_BITMAP);
+  writeMscGraphFromFile(fileName+".msc",outDir,baseName,MSC_BITMAP);
   if (!m_lastIsPara) m_t << "\\par" << endl;
   m_t << "{" << endl;
   m_t << rtf_Style_Reset;

src/scanner.l

@@ -173,6 +173,7 @@ static QCString         idlProp;
 static bool             g_lexInit = FALSE;
 static bool             externC;
 
+static QCString         g_hereDocId;
 
 //-----------------------------------------------------------------------------
 
@@ -695,6 +696,8 @@ TYPEDEFPREFIX (("typedef"{BN}+)?)((("volatile"|"const"){BN}+)?)
 %x	CopyArgComment
 %x	CopyArgCommentLine
 %x	CopyArgVerbatim
+%x	HereDoc
+%x	HereDocEnd
 
 %x      IDLAttribute
 %x      IDLProp
@@ -1822,6 +1825,16 @@ TYPEDEFPREFIX (("typedef"{BN}+)?)((("volatile"|"const"){BN}+)?)
 					  else
 					    BEGIN( EndTemplate );
   					}
+<EndTemplate>"<<<"			{
+  					  if (!insidePHP) 
+					  {
+					    REJECT;
+					  }
+					  else
+					  {
+					    BEGIN(HereDoc);
+					  }
+  					}
 <ClassTemplSpec,EndTemplate>"<<"	{
   					  current->name+=yytext;
   					  // *currentTemplateSpec+=yytext; 
@@ -1901,6 +1914,20 @@ TYPEDEFPREFIX (("typedef"{BN}+)?)((("volatile"|"const"){BN}+)?)
 					  else
 					    REJECT;
 					}
+<HereDoc>{ID}				{ // PHP heredoc
+  					  g_hereDocId = yytext;
+					  BEGIN(HereDocEnd);
+  					}
+<HereDoc>"'"{ID}/"'"			{ // PHP nowdoc
+  					  g_hereDocId = &yytext[1];
+  					}
+<HereDocEnd>^{ID}			{ // id at start of the line could mark the end of the block
+  					  if (g_hereDocId==yytext) // it is the end marker
+					  {
+  					    BEGIN(FindMembers);
+					  }
+  					}
+<HereDocEnd>.				{ }
 <FindMembers>"Q_OBJECT"			{ // Qt object macro
   					}
 <FindMembers>"Q_PROPERTY"		{ // Qt property declaration
@@ -2387,7 +2414,7 @@ TYPEDEFPREFIX (("typedef"{BN}+)?)((("volatile"|"const"){BN}+)?)
 					    }
 					  }
   					}
-<FindMembers,FindFields,ReadInitializer>"//"([!/]?){B}*{CMD}"}".*|"/*"([!*]?){B}*{CMD}"}".*"*/"	{
+<FindMembers,FindFields,ReadInitializer>"//"([!/]?){B}*{CMD}"}".*|"/*"([!*]?){B}*{CMD}"}"[^*]*"*/"	{
   					  closeGroup(current,yyFileName,yyLineNr);
   					}
 <FindMembers>"="			{ // in PHP code this could also be due to "<?="
@@ -5537,7 +5564,14 @@ TYPEDEFPREFIX (("typedef"{BN}+)?)((("volatile"|"const"){BN}+)?)
 
 
 <SkipCxxComment>.*"\\\n"		{  // line continuation
-  					  yyLineNr++; 
+  					  if (insideCS) 
+					  {
+					    REJECT;
+					  }
+					  else 
+					  {
+					    yyLineNr++; 
+					  }
   					}
 <SkipCxxComment>.*/\n			{ 
 					  BEGIN( lastCContext ) ;

src/util.h

@@ -354,6 +354,8 @@ bool updateLanguageMapping(const QCString &extension,const QCString &parser);
 SrcLangExt getLanguageFromFileName(const QCString fileName);
 void initDefaultExtensionMapping();
 
+MemberDef *getMemberFromSymbol(Definition *scope,FileDef *fileScope, 
+                                const char *n);
 bool checkIfTypedef(Definition *scope,FileDef *fileScope,const char *n);
 
 ClassDef *newResolveTypedef(FileDef *fileScope,MemberDef *md,

src/xmlgen.cpp

@@ -495,12 +495,18 @@ void writeXMLCodeBlock(FTextStream &t,FileDef *fd)
   ParserInterface *pIntf=Doxygen::parserManager->getParser(fd->getDefFileExtension());
   pIntf->resetCodeParserState();
   XMLCodeGenerator *xmlGen = new XMLCodeGenerator(t);
-  pIntf->parseCode(*xmlGen,
-                0,
+  pIntf->parseCode(*xmlGen,  // codeOutIntf
+                0,           // scopeName
                 fileToString(fd->absFilePath(),Config_getBool("FILTER_SOURCE_FILES")),
-                FALSE,
-                0,
-                fd);
+                FALSE,       // isExampleBlock
+                0,           // exampleName
+                fd,          // fileDef
+                -1,          // startLine
+                -1,          // endLine
+                FALSE,       // inlineFragement
+                0,           // memberDef
+                TRUE         // showLineNumbers
+                );
   xmlGen->finish();
   delete xmlGen;
 }
@@ -543,20 +549,21 @@ static void stripQualifiers(QCString &typeStr)
 
 static QCString classOutputFileBase(ClassDef *cd)
 {
-  static bool inlineGroupedClasses = Config_getBool("INLINE_GROUPED_CLASSES");
-  if (inlineGroupedClasses && cd->partOfGroups()!=0) 
-    return cd->getXmlOutputFileBase();
-  else 
-    return cd->getOutputFileBase();
+  //static bool inlineGroupedClasses = Config_getBool("INLINE_GROUPED_CLASSES");
+  //if (inlineGroupedClasses && cd->partOfGroups()!=0) 
+  return cd->getOutputFileBase();
+  //else 
+  //  return cd->getOutputFileBase();
 }
 
 static QCString memberOutputFileBase(MemberDef *md)
 {
-  static bool inlineGroupedClasses = Config_getBool("INLINE_GROUPED_CLASSES");
-  if (inlineGroupedClasses && md->getClassDef() && md->getClassDef()->partOfGroups()!=0) 
-    return md->getClassDef()->getXmlOutputFileBase();
-  else 
-    return md->getOutputFileBase();
+  //static bool inlineGroupedClasses = Config_getBool("INLINE_GROUPED_CLASSES");
+  //if (inlineGroupedClasses && md->getClassDef() && md->getClassDef()->partOfGroups()!=0) 
+  //  return md->getClassDef()->getXmlOutputFileBase();
+  //else 
+  //  return md->getOutputFileBase();
+  return md->getOutputFileBase();
 }
 
 

tmake/lib/macosx-c++/tmake.conf

@@ -17,7 +17,7 @@ TMAKE_CFLAGS_SHLIB	= -fPIC
 TMAKE_CFLAGS_YACC	= -Wno-unused -Wno-parentheses
 
 TMAKE_CXX		= c++
-TMAKE_CXXFLAGS		= $$TMAKE_CFLAGS -D__FreeBSD__=6
+TMAKE_CXXFLAGS		= $$TMAKE_CFLAGS -D__FreeBSD__=6 -DYY_TYPEDEF_YY_SIZE_T -Dyy_size_t=int
 TMAKE_CXXFLAGS_WARN_ON	= $$TMAKE_CFLAGS_WARN_ON
 TMAKE_CXXFLAGS_WARN_OFF	= $$TMAKE_CFLAGS_WARN_OFF
 TMAKE_CXXFLAGS_RELEASE	= $$TMAKE_CFLAGS_RELEASE

tmake/lib/macosx-uni-c++/tmake.conf

@@ -17,7 +17,7 @@ TMAKE_CFLAGS_SHLIB	= -fPIC
 TMAKE_CFLAGS_YACC	= -Wno-unused -Wno-parentheses
 
 TMAKE_CXX		= c++
-TMAKE_CXXFLAGS		= $$TMAKE_CFLAGS -D__FreeBSD__=6 -mmacosx-version-min=10.5
+TMAKE_CXXFLAGS		= $$TMAKE_CFLAGS -D__FreeBSD__=6 -mmacosx-version-min=10.5 -DYY_TYPEDEF_YY_SIZE_T -Dyy_size_t=int
 TMAKE_CXXFLAGS_WARN_ON	= $$TMAKE_CFLAGS_WARN_ON
 TMAKE_CXXFLAGS_WARN_OFF	= $$TMAKE_CFLAGS_WARN_OFF
 TMAKE_CXXFLAGS_RELEASE	= $$TMAKE_CFLAGS_RELEASE