Move kernel patches to src

--- a/drivers/ata/ahci.h	2016-09-13 17:18:35.579259846 -0600

+++ b/drivers/ata/ahci.h	2016-08-01 11:57:06.306630339 -0600

@@ -396,6 +396,7 @@ void ahci_print_info(struct ata_host *ho

 int ahci_host_activate(struct ata_host *host, int irq,

 		       struct scsi_host_template *sht);

 void ahci_error_handler(struct ata_port *ap);

+irqreturn_t ahci_single_irq_intr(int irq, void *dev_instance);

 static inline void __iomem *__ahci_port_base(struct ata_host *host,

 					     unsigned int port_no)

diff -Naur a/drivers/Kconfig b/drivers/Kconfig

--- a/drivers/Kconfig	2016-01-25 18:31:43.309779723 -0700

+++ b/drivers/Kconfig	2016-01-25 18:48:17.521798388 -0700

@@ -182,4 +182,6 @@

 source "drivers/android/Kconfig"

+source "drivers/elphel/Kconfig"

+

 endmenu

diff -Naur a/drivers/Makefile b/drivers/Makefile

--- a/drivers/Makefile	2016-01-25 18:31:43.309779723 -0700

+++ b/drivers/Makefile	2016-01-25 18:50:39.545801055 -0700

@@ -165,3 +165,6 @@

 obj-$(CONFIG_THUNDERBOLT)	+= thunderbolt/

 obj-$(CONFIG_CORESIGHT)		+= coresight/

 obj-$(CONFIG_ANDROID)		+= android/

+

+obj-$(CONFIG_ELPHEL393)		+= elphel/

+obj-$(CONFIG_ELPHELDRVONMICROZED)	+= elphel/

--- a/drivers/ata/libahci.c	2016-09-13 17:18:35.579259846 -0600

+++ b/drivers/ata/libahci.c	2016-07-27 20:25:34.217095567 -0600

@@ -1826,7 +1826,7 @@ static irqreturn_t ahci_multi_irqs_intr(

 	return IRQ_WAKE_THREAD;

 }

-static irqreturn_t ahci_single_irq_intr(int irq, void *dev_instance)

+irqreturn_t ahci_single_irq_intr(int irq, void *dev_instance)

 {

 	struct ata_host *host = dev_instance;

 	struct ahci_host_priv *hpriv;

@@ -1885,6 +1885,7 @@ static irqreturn_t ahci_single_irq_intr(

 	return IRQ_RETVAL(handled);

 }

+EXPORT_SYMBOL_GPL(ahci_single_irq_intr);

 unsigned int ahci_qc_issue(struct ata_queued_cmd *qc)

 {

diff -Naur a/drivers/clk/Kconfig b/drivers/clk/Kconfig

--- a/drivers/clk/Kconfig	2016-01-25 18:31:43.413779725 -0700

+++ b/drivers/clk/Kconfig	2016-01-25 19:09:12.833821955 -0700

@@ -59,6 +59,16 @@

 	  clocked at 32KHz each. Clkout1 is always on, Clkout2 can off

 	  by control register.

+config COMMON_CLK_SI5338

+	tristate "Support Silicon Laboratories SI5338 Quad Clock Generator"

+	depends on I2C

+	select REGMAP_I2C

+	select RATIONAL

+	help

+	 Say Y here if you have a SI5338 Quad Clock Generator IC on the I2C bus.

+	 To compile this driver as a module, choose M here: the

+	 module will be called si5338.

+

 config COMMON_CLK_SI5351

 	tristate "Clock driver for SiLabs 5351A/B/C"

 	depends on I2C

diff -Naur a/drivers/clk/Makefile b/drivers/clk/Makefile

--- a/drivers/clk/Makefile	2016-01-25 18:31:43.413779725 -0700

+++ b/drivers/clk/Makefile	2016-01-25 19:09:46.217822582 -0700

@@ -35,6 +35,7 @@

 obj-$(CONFIG_CLK_QORIQ)			+= clk-qoriq.o

 obj-$(CONFIG_COMMON_CLK_RK808)		+= clk-rk808.o

 obj-$(CONFIG_COMMON_CLK_S2MPS11)	+= clk-s2mps11.o

+obj-$(CONFIG_COMMON_CLK_SI5338)		+= clk-si5338.o

 obj-$(CONFIG_COMMON_CLK_SI5351)		+= clk-si5351.o

 obj-$(CONFIG_COMMON_CLK_SI570)		+= clk-si570.o

 obj-$(CONFIG_CLK_TWL6040)		+= clk-twl6040.o

diff -Naur a/drivers/misc/Kconfig b/drivers/misc/Kconfig

--- a/drivers/misc/Kconfig	2016-01-28 19:14:34.610694113 -0700

+++ b/drivers/misc/Kconfig	2016-01-28 19:42:44.730725843 -0700

@@ -515,6 +515,23 @@

 	  bus. System Configuration interface is one of the possible means

 	  of generating transactions on this bus.

+config VSC330X

+	tristate "Support VSC330X crosspoint switch"

+	help

+	  Say Y here if you have a VSC30X crosspoint switch IC on the I2C bus.

+	  To compile this driver as a module, choose M here: the

+	  module will be called vsc330x.

+

+config LTC3589

+	tristate "Support LTC3589 voltage regulator"

+	help

+	  Say Y here if you have a LTC3589 voltage regulator IC on the I2C bus.

+	  To compile this driver as a module, choose M here: the

+	  module will be called ltc3589. 

+	  Developed by Elphel, Inc.. 

+	  The default driver is found at drivers/regulator/ltc3589.c and 

+	  enabled with CONFIG_REGULATOR_LTC3589=y

+	  

 config XILINX_TRAFGEN

 	tristate "Xilinx Traffic Generator"

 	depends on MICROBLAZE || ARCH_ZYNQ

diff -Naur a/drivers/misc/Makefile b/drivers/misc/Makefile

--- a/drivers/misc/Makefile	2016-01-28 19:14:34.610694113 -0700

+++ b/drivers/misc/Makefile	2016-01-28 19:19:56.638700159 -0700

@@ -58,3 +58,5 @@

 obj-$(CONFIG_ECHO)		+= echo/

 obj-$(CONFIG_VEXPRESS_SYSCFG)	+= vexpress-syscfg.o

 obj-$(CONFIG_CXL_BASE)		+= cxl/

+obj-$(CONFIG_VSC330X)	        += vsc330x.o

+obj-$(CONFIG_LTC3589)	        += ltc3589.o

diff -Naur a/drivers/net/ethernet/xilinx/xilinx_emacps.c b/drivers/net/ethernet/xilinx/xilinx_emacps.c

--- a/drivers/net/ethernet/xilinx/xilinx_emacps.c	2016-01-25 18:34:24.065782741 -0700

+++ b/drivers/net/ethernet/xilinx/xilinx_emacps.c	2016-01-25 19:03:50.781815909 -0700

@@ -479,6 +479,10 @@

 #define XEMACPS_PTP_CC_MULT		(1 << 31)

 #endif

+/* Elphel */

+#define AT803X_PHY_ID          0x004dd072 /*Particular one, AR8035 but we'll use a broad mask */

+#define AT803X_PHY_ID_MASK     0xffffffe0

+

 #define xemacps_read(base, reg)						\

 	readl_relaxed(((void __iomem *)(base)) + (reg))

 #define xemacps_write(base, reg, val)					\

@@ -871,6 +875,49 @@

 	return 0;

 }

+/* http://www.spinics.net/lists/devicetree/msg06322.html */

+static int ar8035_phy_fixup(struct phy_device *dev)

+{

+	u16 val;

+	struct net_local *lp = dev->bus->priv;

+	dev_dbg(&lp->pdev->dev,"fixup start");

+

+	/* Ar803x phy SmartEEE feature cause link status generates glitch,

+	* which cause ethernet link down/up issue, so disable SmartEEE

+	*/

+	phy_write(dev, 0xd, 0x3);

+	phy_write(dev, 0xe, 0x805d);

+	phy_write(dev, 0xd, 0x4003);

+

+	val = phy_read(dev, 0xe);

+	phy_write(dev, 0xe, val & ~(1 << 8));

+	/*Enable if needed */

+#if 0

+	/* To enable AR8031 output a 125MHz clk from CLK_25M */

+	phy_write(dev, 0xd, 0x7);

+	phy_write(dev, 0xe, 0x8016);

+	phy_write(dev, 0xd, 0x4007);

+

+	val = phy_read(dev, 0xe);

+	val &= 0xffe3;

+	val |= 0x18;

+	phy_write(dev, 0xe, val);

+#endif

+/* Next one what is really needed for Elphel 393 */

+	/* introduce tx clock delay */

+	phy_write(dev, 0x1d, 0x5);

+	val = phy_read(dev, 0x1e);

+	val |= 0x0100;

+	phy_write(dev, 0x1e, val);

+

+	/*check phy power*/

+	val = phy_read(dev, 0x0);

+	if (val & BMCR_PDOWN)

+		phy_write(dev, 0x0, val & ~BMCR_PDOWN);

+	dev_dbg(&lp->pdev->dev,"fixup end");

+	return 0;

+}

+

 /**

  * xemacps_mii_init - Initialize and register mii bus to network device

  * @lp: local device instance pointer

@@ -883,6 +930,8 @@

 	struct device_node *np = of_get_parent(lp->phy_node);

 	struct device_node *npp;

+	phy_register_fixup_for_uid(AT803X_PHY_ID,  AT803X_PHY_ID_MASK,  ar8035_phy_fixup);

+	

 	lp->mii_bus = of_mdio_find_bus(np);

 	if (!lp->has_mdio && lp->mii_bus)

 		return 0;