# This document is a configuration file identifying all file format readers # available to Bio-Formats, and the order in which they should be used. # Please do not edit unless you know what you are doing, see # https://docs.openmicroscopy.org/latest/bio-formats/developers/reader-guide.html # Could not find loci.formats.in.URLReader # Could not find loci.formats.in.SlideBook6Reader # "loci.formats.in.MicroCTReader" is not valid. # Could not find loci.formats.in.CV7000Reader # Could not find loci.formats.in.KLBReader # java.lang.ClassNotFoundException: loci.formats.in.SlideBook6Reader # at java.net.URLClassLoader.findClass(URLClassLoader.java:382) ~[na:1.8.0_201] #Elphel readers com.elphel.imagej.readers.ElphelTiffReader # extensions same as TiffReader loci.formats.in.FilePatternReader # pattern ##loci.formats.in.URLReader[type=external] # urlreader # Could not find loci.formats.in.URLReader # readers for compressed/archive files loci.formats.in.ZipReader # zip # javax.imageio readers loci.formats.in.APNGReader # png [javax.imageio] loci.formats.in.JPEGReader # jpg, jpeg [javax.imageio] # external readers with unique file extensions ##loci.formats.in.SlideBook6Reader[type=external] # sld # Could not find loci.formats.in.SlideBook6Reader loci.formats.in.ScreenReader[type=external] # .screen # standalone readers with unique file extensions loci.formats.in.PGMReader # pgm loci.formats.in.FitsReader # fits loci.formats.in.PCXReader # pcx loci.formats.in.GIFReader # gif loci.formats.in.BMPReader # bmp loci.formats.in.IPLabReader # ipl loci.formats.in.IvisionReader # ipm loci.formats.in.DeltavisionReader # dv, r3d loci.formats.in.MRCReader # mrc, st, ali loci.formats.in.GatanReader # dm3 loci.formats.in.GatanDM2Reader # dm2 loci.formats.in.ImarisReader # ims loci.formats.in.OpenlabRawReader # raw loci.formats.in.OMEXMLReader # ome loci.formats.in.LIFReader # lif loci.formats.in.AVIReader # avi loci.formats.in.PictReader # pict, pct loci.formats.in.SDTReader # sdt loci.formats.in.SPCReader # spc loci.formats.in.EPSReader # eps, epsi loci.formats.in.SlidebookReader # sld loci.formats.in.AliconaReader # al3d loci.formats.in.MNGReader # mng loci.formats.in.KhorosReader # xv loci.formats.in.VisitechReader # html, xys loci.formats.in.LIMReader # lim loci.formats.in.PSDReader # psd loci.formats.in.InCellReader # xdce loci.formats.in.L2DReader # l2d loci.formats.in.FEIReader # img loci.formats.in.NAFReader # naf loci.formats.in.MINCReader # mnc loci.formats.in.QTReader # mov loci.formats.in.MRWReader # mrw loci.formats.in.TillVisionReader # vws loci.formats.in.ARFReader # arf loci.formats.in.CellomicsReader # c01 loci.formats.in.LiFlimReader # fli loci.formats.in.TargaReader # tga loci.formats.in.OxfordInstrumentsReader # top loci.formats.in.VGSAMReader # dti loci.formats.in.HISReader # his loci.formats.in.WATOPReader # wat loci.formats.in.SeikoReader # xqd, xqf loci.formats.in.TopometrixReader # tfr, ffr, zfr, zfp, 2fl loci.formats.in.UBMReader # pr3 loci.formats.in.QuesantReader # afm loci.formats.in.BioRadGelReader # 1sc loci.formats.in.RHKReader # sm2, sm3 loci.formats.in.MolecularImagingReader # stp loci.formats.in.CellWorxReader # pnl, htd loci.formats.in.Ecat7Reader # v loci.formats.in.VarianFDFReader # fdf loci.formats.in.AIMReader # aim loci.formats.in.InCell3000Reader # frm loci.formats.in.SpiderReader # spi loci.formats.in.VolocityReader # mvd2 loci.formats.in.ImagicReader # hed loci.formats.in.HamamatsuVMSReader # vms loci.formats.in.CellSensReader # vsi loci.formats.in.INRReader # inr loci.formats.in.KodakReader # bip loci.formats.in.VolocityClippingReader # acff loci.formats.in.ZeissCZIReader # czi loci.formats.in.SIFReader # sif loci.formats.in.NDPISReader # ndpis loci.formats.in.PovrayReader # df3 loci.formats.in.IMODReader # mod loci.formats.in.FakeReader # fake loci.formats.in.AFIReader # afi loci.formats.in.ImspectorReader # msr loci.formats.in.BioRadSCNReader # scn loci.formats.in.ZeissLMSReader # lms loci.formats.in.PQBinReader # bin loci.formats.in.FlowSightReader # cif loci.formats.in.IM3Reader # im3 loci.formats.in.I2IReader # i2i loci.formats.in.SPEReader # spe loci.formats.in.OIRReader # oir ##loci.formats.in.KLBReader # klb # Could not find loci.formats.in.KLBReader ##loci.formats.in.MicroCTReader # vff # "loci.formats.in.MicroCTReader" is not valid. # multi-extension messes loci.formats.in.JEOLReader # dat, img, par loci.formats.in.NiftiReader # hdr, img, nii, nii.gz loci.formats.in.AnalyzeReader # hdr, img loci.formats.in.APLReader # apl, mtb, tnb loci.formats.in.NRRDReader # nrrd, nhdr, pic loci.formats.in.ICSReader # ics, ids loci.formats.in.PerkinElmerReader # rec, ano, csv, htm, tim, zpo, 2, 3, ... loci.formats.in.AmiraReader # am, amiramesh, grey, hx, labels, ... loci.formats.in.ScanrReader # dat, xml, tif loci.formats.in.BDReader # exp, tif loci.formats.in.UnisokuReader # dat, hdr loci.formats.in.PDSReader # hdr, img loci.formats.in.FujiReader # inf, img loci.formats.in.OperettaReader # xml, tif, tiff loci.formats.in.InveonReader # hdr, ct.img, cat, ... loci.formats.in.CellVoyagerReader # xml, tif loci.formats.in.ColumbusReader # xml, tif ##loci.formats.in.CV7000Reader # wpi # Could not find loci.formats.in.CV7000Reader # standard PIC reader must go last (it accepts any PIC) loci.formats.in.BioRadReader # pic # readers requiring third-party libraries loci.formats.in.FV1000Reader # oib, oif, various [POI] loci.formats.in.ZeissZVIReader # zvi [POI] loci.formats.in.IPWReader # ipw [POI] loci.formats.in.JPEG2000Reader # jp2, j2k [JAI-ImageIO] loci.formats.in.JPXReader # jpx [JAI-ImageIO] loci.formats.in.ND2Reader # nd2, jp2 [JAI-ImageIO] loci.formats.in.PCIReader # cxd [POI] loci.formats.in.ImarisHDFReader # ims [NetCDF] loci.formats.in.CellH5Reader # ch5 [JHDF] loci.formats.in.WlzReader # wlz [JWlz] loci.formats.in.VeecoReader # hdf [NetCDF] # TIFF-based readers with unique file extensions loci.formats.in.ZeissLSMReader # lsm, mdb [MDB Tools] loci.formats.in.SEQReader # seq loci.formats.in.GelReader # gel loci.formats.in.ImarisTiffReader # ims loci.formats.in.FlexReader # flex [LuraWave] loci.formats.in.SVSReader # svs loci.formats.in.ImaconReader # fff loci.formats.in.LEOReader # sxm loci.formats.in.JPKReader # jpk loci.formats.in.NDPIReader # ndpi loci.formats.in.PCORAWReader # pcoraw # TIFF-based readers with slow isThisType loci.formats.in.OMETiffReader # tif loci.formats.in.PyramidTiffReader # tif, tiff loci.formats.in.MIASReader # tif loci.formats.in.TCSReader # xml, tif loci.formats.in.LeicaReader # lei, tif loci.formats.in.NikonReader # nef, tif loci.formats.in.FluoviewReader # tif loci.formats.in.PrairieReader # xml, cfg, tif loci.formats.in.MetamorphReader # stk, tif, nd, scan loci.formats.in.MicromanagerReader # txt, tif loci.formats.in.ImprovisionTiffReader # tif loci.formats.in.MetamorphTiffReader # tif loci.formats.in.NikonTiffReader # tif loci.formats.in.PhotoshopTiffReader # tif loci.formats.in.FEITiffReader # tif loci.formats.in.SimplePCITiffReader # tif loci.formats.in.NikonElementsTiffReader # tif loci.formats.in.TrestleReader # tif loci.formats.in.SISReader # tif loci.formats.in.DNGReader # cr2, crw, jpg, thm, wav, tif? loci.formats.in.ZeissTIFFReader # tif loci.formats.in.LeicaSCNReader # scn loci.formats.in.VectraReader # tif, tiff, qptiff loci.formats.in.SlidebookTiffReader # tiff loci.formats.in.IonpathMIBITiffReader # tif, tiff # standard TIFF reader must go last (it accepts any TIFF) loci.formats.in.TiffDelegateReader # tif, tiff # standard text reader must go last (it accepts any plaintext) loci.formats.in.TextReader # txt, csv # non-TIFF readers with slow isThisType loci.formats.in.BurleighReader # img loci.formats.in.OpenlabReader # liff loci.formats.in.DicomReader # dcm, dicom loci.formats.in.SMCameraReader # (no extension) loci.formats.in.SBIGReader # (no extension) loci.formats.in.HRDGDFReader # (no extension) loci.formats.in.HitachiReader # txt, tif, jpg, bmp loci.formats.in.BrukerReader # fid, acqp loci.formats.in.CanonRawReader # cr2, crw, jpg, thm, wav loci.formats.in.OBFReader # obf, msr