added some filtereing to tiles-to-surfaces assignment (a8e74029) · Commits · Elphel / imagej-elphel

src/main/java/EyesisCorrectionParameters.java

+99 −16

Original line number	Original line	Diff line number	Diff line
	@@ -2170,6 +2170,7 @@ public class EyesisCorrectionParameters {
	public double plMaxEigen = 0.3; // Maximal eigenvalue of a plane		public double plMaxEigen = 0.3; // Maximal eigenvalue of a plane
	public boolean plDbgMerge = true; // Combine 'other' plane with current		public boolean plDbgMerge = true; // Combine 'other' plane with current
	public double plWorstWorsening = 3.0; // Worst case worsening after merge		public double plWorstWorsening = 3.0; // Worst case worsening after merge
			public double plOKMergeEigen = 0.01; // If result of the merged planes is below, OK to bypass worst worsening
	public double plWeakWorsening = 1.0; // Relax merge requirements for weaker planes		public double plWeakWorsening = 1.0; // Relax merge requirements for weaker planes
	public boolean plMutualOnly = true; // keep only mutual links, remove weakest if conflict		public boolean plMutualOnly = true; // keep only mutual links, remove weakest if conflict
	public boolean plFillSquares = true; // Add diagonals to full squares		public boolean plFillSquares = true; // Add diagonals to full squares
	@@ -2221,14 +2222,28 @@ public class EyesisCorrectionParameters {
	public double tsMaxStrength = 10.0; // Maximal tile correlation strength to be assigned		public double tsMaxStrength = 10.0; // Maximal tile correlation strength to be assigned
	public double tsMinSurface = 0.0001; // Minimal surface strength at the tile location		public double tsMinSurface = 0.0001; // Minimal surface strength at the tile location
	public int tsMoveDirs = 3; // Allowed tile disparity correction: 1 increase, 2 - decrease, 3 - both directions		public int tsMoveDirs = 3; // Allowed tile disparity correction: 1 increase, 2 - decrease, 3 - both directions
	public boolean tsEnMulti = false; // Allow assignment when several surfaces fit
	public boolean tsLoopMulti = true; // Repeat multi-choice assignment while succeeding
	public double tsSurfStrPow = 0.0; // Raise surface strengths ratio to this power when comparing candidates		public double tsSurfStrPow = 0.0; // Raise surface strengths ratio to this power when comparing candidates
	public double tsAddStrength = 0.01; // Add to strengths when calculating pull of assigned tiles		public double tsAddStrength = 0.01; // Add to strengths when calculating pull of assigned tiles
	public double tsSigma = 2.0; // Radius of influence (in tiles) of the previously assigned tiles		public double tsSigma = 2.0; // Radius of influence (in tiles) of the previously assigned tiles
	public double tsNSigma = 2.0; // Maximal relative to radius distance to calculate influence		public double tsNSigma = 2.0; // Maximal relative to radius distance to calculate influence
	public double tsMinPull = 0.001; // Additional pull of each surface		public double tsMinPull = 0.001; // Additional pull of each surface
	public double tsMinAdvantage = 3.0; // Minimal ratio of the best surface candidate to the next one to make selection		public double tsMinAdvantage = 3.0; // Minimal ratio of the best surface candidate to the next one to make selection

			public int tsClustSize = 1; // Minimal size of a cluster to keep
			public double tsClustWeight = 0.2; // Minimal total weight of a cluster to keep

			public int tsMinNeib = 6; // Minimal number of neighbors of unassigned tile to join (the farthest)
			public double tsMaxSurStrength = 0.05; // Maximal strength of the surrounded unassigned tile to join
			public boolean tsCountDis = true; // Include disabled tiles/borders when counting assigned neighbors

			public boolean tsEnSingle = true; // Allow assignment to the nearest surface with no competitors
			public boolean tsEnMulti = true; // Allow assignment when several surfaces fit

			public boolean tsRemoveWeak1 = false; // Remove weak clusters before growing
			public boolean tsGrowSurround = true; // Assign tiles that have neighbors to the lowest disparity
			public boolean tsRemoveWeak2 = true; // Remove weak clusters after growing

			public boolean tsLoopMulti = true; // Repeat multi-choice assignment while succeeding
	public boolean tsReset = false; // Reset tiles to surfaces assignment		public boolean tsReset = false; // Reset tiles to surfaces assignment
	public boolean tsShow = false; // Show results of tiles to surfaces assignment		public boolean tsShow = false; // Show results of tiles to surfaces assignment

	@@ -2497,6 +2512,7 @@ public class EyesisCorrectionParameters {
	properties.setProperty(prefix+"plMaxEigen", this.plMaxEigen +"");		properties.setProperty(prefix+"plMaxEigen", this.plMaxEigen +"");
	properties.setProperty(prefix+"plDbgMerge", this.plDbgMerge+"");		properties.setProperty(prefix+"plDbgMerge", this.plDbgMerge+"");
	properties.setProperty(prefix+"plWorstWorsening", this.plWorstWorsening +"");		properties.setProperty(prefix+"plWorstWorsening", this.plWorstWorsening +"");
			properties.setProperty(prefix+"plOKMergeEigen", this.plOKMergeEigen +"");
	properties.setProperty(prefix+"plWeakWorsening", this.plWeakWorsening +"");		properties.setProperty(prefix+"plWeakWorsening", this.plWeakWorsening +"");
	properties.setProperty(prefix+"plMutualOnly", this.plMutualOnly+"");		properties.setProperty(prefix+"plMutualOnly", this.plMutualOnly+"");
	properties.setProperty(prefix+"plFillSquares", this.plFillSquares+"");		properties.setProperty(prefix+"plFillSquares", this.plFillSquares+"");
	@@ -2542,14 +2558,24 @@ public class EyesisCorrectionParameters {
	properties.setProperty(prefix+"tsMaxStrength", this.tsMaxStrength +"");		properties.setProperty(prefix+"tsMaxStrength", this.tsMaxStrength +"");
	properties.setProperty(prefix+"tsMinSurface", this.tsMinSurface +"");		properties.setProperty(prefix+"tsMinSurface", this.tsMinSurface +"");
	properties.setProperty(prefix+"tsMoveDirs", this.tsMoveDirs+"");		properties.setProperty(prefix+"tsMoveDirs", this.tsMoveDirs+"");
	properties.setProperty(prefix+"tsEnMulti", this.tsEnMulti+"");
	properties.setProperty(prefix+"tsLoopMulti", this.tsLoopMulti+"");
	properties.setProperty(prefix+"tsSurfStrPow", this.tsSurfStrPow +"");		properties.setProperty(prefix+"tsSurfStrPow", this.tsSurfStrPow +"");
	properties.setProperty(prefix+"tsAddStrength", this.tsAddStrength +"");		properties.setProperty(prefix+"tsAddStrength", this.tsAddStrength +"");
	properties.setProperty(prefix+"tsSigma", this.tsSigma +"");		properties.setProperty(prefix+"tsSigma", this.tsSigma +"");
	properties.setProperty(prefix+"tsNSigma", this.tsNSigma +"");		properties.setProperty(prefix+"tsNSigma", this.tsNSigma +"");
	properties.setProperty(prefix+"tsMinPull", this.tsMinPull +"");		properties.setProperty(prefix+"tsMinPull", this.tsMinPull +"");
	properties.setProperty(prefix+"tsMinAdvantage", this.tsMinAdvantage +"");		properties.setProperty(prefix+"tsMinAdvantage", this.tsMinAdvantage +"");

			properties.setProperty(prefix+"tsClustSize", this.tsClustSize +"");
			properties.setProperty(prefix+"tsClustWeight", this.tsClustWeight +"");
			properties.setProperty(prefix+"tsMinNeib", this.tsMinNeib +"");
			properties.setProperty(prefix+"tsMaxSurStrength", this.tsMaxSurStrength +"");
			properties.setProperty(prefix+"tsCountDis", this.tsCountDis +"");
			properties.setProperty(prefix+"tsEnSingle", this.tsEnSingle+"");
			properties.setProperty(prefix+"tsEnMulti", this.tsEnMulti+"");
			properties.setProperty(prefix+"tsRemoveWeak1", this.tsRemoveWeak1+"");
			properties.setProperty(prefix+"tsGrowSurround", this.tsGrowSurround+"");
			properties.setProperty(prefix+"tsRemoveWeak2", this.tsRemoveWeak2+"");
			properties.setProperty(prefix+"tsLoopMulti", this.tsLoopMulti+"");
	properties.setProperty(prefix+"tsShow", this.tsShow+"");		properties.setProperty(prefix+"tsShow", this.tsShow+"");

	properties.setProperty(prefix+"dbg_migrate", this.dbg_migrate+"");		properties.setProperty(prefix+"dbg_migrate", this.dbg_migrate+"");
	@@ -2808,6 +2834,7 @@ public class EyesisCorrectionParameters {
	if (properties.getProperty(prefix+"plMaxEigen")!=null) this.plMaxEigen=Double.parseDouble(properties.getProperty(prefix+"plMaxEigen"));		if (properties.getProperty(prefix+"plMaxEigen")!=null) this.plMaxEigen=Double.parseDouble(properties.getProperty(prefix+"plMaxEigen"));
	if (properties.getProperty(prefix+"plDbgMerge")!=null) this.plDbgMerge=Boolean.parseBoolean(properties.getProperty(prefix+"plDbgMerge"));		if (properties.getProperty(prefix+"plDbgMerge")!=null) this.plDbgMerge=Boolean.parseBoolean(properties.getProperty(prefix+"plDbgMerge"));
	if (properties.getProperty(prefix+"plWorstWorsening")!=null) this.plWorstWorsening=Double.parseDouble(properties.getProperty(prefix+"plWorstWorsening"));		if (properties.getProperty(prefix+"plWorstWorsening")!=null) this.plWorstWorsening=Double.parseDouble(properties.getProperty(prefix+"plWorstWorsening"));
			if (properties.getProperty(prefix+"plOKMergeEigen")!=null) this.plOKMergeEigen=Double.parseDouble(properties.getProperty(prefix+"plOKMergeEigen"));
	if (properties.getProperty(prefix+"plWeakWorsening")!=null) this.plWeakWorsening=Double.parseDouble(properties.getProperty(prefix+"plWeakWorsening"));		if (properties.getProperty(prefix+"plWeakWorsening")!=null) this.plWeakWorsening=Double.parseDouble(properties.getProperty(prefix+"plWeakWorsening"));
	if (properties.getProperty(prefix+"plMutualOnly")!=null) this.plMutualOnly=Boolean.parseBoolean(properties.getProperty(prefix+"plMutualOnly"));		if (properties.getProperty(prefix+"plMutualOnly")!=null) this.plMutualOnly=Boolean.parseBoolean(properties.getProperty(prefix+"plMutualOnly"));

	@@ -2856,17 +2883,26 @@ public class EyesisCorrectionParameters {
	if (properties.getProperty(prefix+"tsMaxStrength")!=null) this.tsMaxStrength=Double.parseDouble(properties.getProperty(prefix+"tsMaxStrength"));		if (properties.getProperty(prefix+"tsMaxStrength")!=null) this.tsMaxStrength=Double.parseDouble(properties.getProperty(prefix+"tsMaxStrength"));
	if (properties.getProperty(prefix+"tsMinSurface")!=null) this.tsMinSurface=Double.parseDouble(properties.getProperty(prefix+"tsMinSurface"));		if (properties.getProperty(prefix+"tsMinSurface")!=null) this.tsMinSurface=Double.parseDouble(properties.getProperty(prefix+"tsMinSurface"));
	if (properties.getProperty(prefix+"tsMoveDirs")!=null) this.tsMoveDirs=Integer.parseInt(properties.getProperty(prefix+"tsMoveDirs"));		if (properties.getProperty(prefix+"tsMoveDirs")!=null) this.tsMoveDirs=Integer.parseInt(properties.getProperty(prefix+"tsMoveDirs"));
	if (properties.getProperty(prefix+"tsEnMulti")!=null) this.tsEnMulti=Boolean.parseBoolean(properties.getProperty(prefix+"tsEnMulti"));
	if (properties.getProperty(prefix+"tsLoopMulti")!=null) this.tsLoopMulti=Boolean.parseBoolean(properties.getProperty(prefix+"tsLoopMulti"));
	if (properties.getProperty(prefix+"tsSurfStrPow")!=null) this.tsSurfStrPow=Double.parseDouble(properties.getProperty(prefix+"tsSurfStrPow"));		if (properties.getProperty(prefix+"tsSurfStrPow")!=null) this.tsSurfStrPow=Double.parseDouble(properties.getProperty(prefix+"tsSurfStrPow"));
	if (properties.getProperty(prefix+"tsAddStrength")!=null) this.tsAddStrength=Double.parseDouble(properties.getProperty(prefix+"tsAddStrength"));		if (properties.getProperty(prefix+"tsAddStrength")!=null) this.tsAddStrength=Double.parseDouble(properties.getProperty(prefix+"tsAddStrength"));
	if (properties.getProperty(prefix+"tsSigma")!=null) this.tsSigma=Double.parseDouble(properties.getProperty(prefix+"tsSigma"));		if (properties.getProperty(prefix+"tsSigma")!=null) this.tsSigma=Double.parseDouble(properties.getProperty(prefix+"tsSigma"));
	if (properties.getProperty(prefix+"tsNSigma")!=null) this.tsNSigma=Double.parseDouble(properties.getProperty(prefix+"tsNSigma"));		if (properties.getProperty(prefix+"tsNSigma")!=null) this.tsNSigma=Double.parseDouble(properties.getProperty(prefix+"tsNSigma"));
	if (properties.getProperty(prefix+"tsMinPull")!=null) this.tsMinPull=Double.parseDouble(properties.getProperty(prefix+"tsMinPull"));		if (properties.getProperty(prefix+"tsMinPull")!=null) this.tsMinPull=Double.parseDouble(properties.getProperty(prefix+"tsMinPull"));
	if (properties.getProperty(prefix+"tsMinAdvantage")!=null) this.tsMinAdvantage=Double.parseDouble(properties.getProperty(prefix+"tsMinAdvantage"));		if (properties.getProperty(prefix+"tsMinAdvantage")!=null) this.tsMinAdvantage=Double.parseDouble(properties.getProperty(prefix+"tsMinAdvantage"));
	if (properties.getProperty(prefix+"tsShow")!=null) this.tsShow=Boolean.parseBoolean(properties.getProperty(prefix+"tsShow"));

			if (properties.getProperty(prefix+"tsClustSize")!=null) this.tsClustSize=Integer.parseInt(properties.getProperty(prefix+"tsClustSize"));
			if (properties.getProperty(prefix+"tsClustWeight")!=null) this.tsClustWeight=Double.parseDouble(properties.getProperty(prefix+"tsClustWeight"));
			if (properties.getProperty(prefix+"tsMinNeib")!=null) this.tsMinNeib=Integer.parseInt(properties.getProperty(prefix+"tsMinNeib"));
			if (properties.getProperty(prefix+"tsMaxSurStrength")!=null) this.tsMaxSurStrength=Double.parseDouble(properties.getProperty(prefix+"tsMaxSurStrength"));
			if (properties.getProperty(prefix+"tsCountDis")!=null) this.tsCountDis=Boolean.parseBoolean(properties.getProperty(prefix+"tsCountDis"));
			if (properties.getProperty(prefix+"tsEnSingle")!=null) this.tsEnSingle=Boolean.parseBoolean(properties.getProperty(prefix+"tsEnSingle"));
			if (properties.getProperty(prefix+"tsEnMulti")!=null) this.tsEnMulti=Boolean.parseBoolean(properties.getProperty(prefix+"tsEnMulti"));
			if (properties.getProperty(prefix+"tsRemoveWeak1")!=null) this.tsRemoveWeak1=Boolean.parseBoolean(properties.getProperty(prefix+"tsRemoveWeak1"));
			if (properties.getProperty(prefix+"tsGrowSurround")!=null) this.tsGrowSurround=Boolean.parseBoolean(properties.getProperty(prefix+"tsGrowSurround"));
			if (properties.getProperty(prefix+"tsRemoveWeak2")!=null) this.tsRemoveWeak2=Boolean.parseBoolean(properties.getProperty(prefix+"tsRemoveWeak2"));

			if (properties.getProperty(prefix+"tsLoopMulti")!=null) this.tsLoopMulti=Boolean.parseBoolean(properties.getProperty(prefix+"tsLoopMulti"));
			if (properties.getProperty(prefix+"tsShow")!=null) this.tsShow=Boolean.parseBoolean(properties.getProperty(prefix+"tsShow"));
	if (properties.getProperty(prefix+"dbg_migrate")!=null) this.dbg_migrate=Boolean.parseBoolean(properties.getProperty(prefix+"dbg_migrate"));		if (properties.getProperty(prefix+"dbg_migrate")!=null) this.dbg_migrate=Boolean.parseBoolean(properties.getProperty(prefix+"dbg_migrate"));

	if (properties.getProperty(prefix+"show_ortho_combine")!=null) this.show_ortho_combine=Boolean.parseBoolean(properties.getProperty(prefix+"show_ortho_combine"));		if (properties.getProperty(prefix+"show_ortho_combine")!=null) this.show_ortho_combine=Boolean.parseBoolean(properties.getProperty(prefix+"show_ortho_combine"));
	@@ -3147,6 +3183,7 @@ public class EyesisCorrectionParameters {
	gd.addNumericField("Maximal eigenvalue of a plane", this.plMaxEigen, 6);		gd.addNumericField("Maximal eigenvalue of a plane", this.plMaxEigen, 6);
	gd.addCheckbox ("Combine 'other' plane with the current (unused)", this.plDbgMerge);		gd.addCheckbox ("Combine 'other' plane with the current (unused)", this.plDbgMerge);
	gd.addNumericField("Worst case worsening after merge", this.plWorstWorsening, 6);		gd.addNumericField("Worst case worsening after merge", this.plWorstWorsening, 6);
			gd.addNumericField("If result of the merged planes is below, OK to bypass worst worsening", this.plOKMergeEigen, 6);
	gd.addNumericField("Relax merge requirements for weaker planes", this.plWeakWorsening, 6);		gd.addNumericField("Relax merge requirements for weaker planes", this.plWeakWorsening, 6);
	gd.addCheckbox ("Keep only mutual links, remove weakest if conflict", this.plMutualOnly);		gd.addCheckbox ("Keep only mutual links, remove weakest if conflict", this.plMutualOnly);

	@@ -3189,20 +3226,33 @@ public class EyesisCorrectionParameters {
	gd.addNumericField("Scale projection of the plane ellipsoid", this.msScaleProj, 6);		gd.addNumericField("Scale projection of the plane ellipsoid", this.msScaleProj, 6);
	gd.addNumericField("Spread this fraction of the ellipsoid weight among extended (double) supertile",this.msFractUni, 6);		gd.addNumericField("Spread this fraction of the ellipsoid weight among extended (double) supertile",this.msFractUni, 6);

			gd.addMessage ("--- Tiles assignment ---");

	gd.addNumericField("Maximal disparity difference when assigning tiles", this.tsMaxDiff, 6);		gd.addNumericField("Maximal disparity difference when assigning tiles", this.tsMaxDiff, 6);
	gd.addNumericField("Minimal disparity difference to be considered as a competitor surface", this.tsMinDiffOther, 6);		gd.addNumericField("Minimal disparity difference to be considered as a competitor surface", this.tsMinDiffOther, 6);
	gd.addNumericField("Minimal tile correlation strength to be assigned", this.tsMinStrength, 6);		gd.addNumericField("Minimal tile correlation strength to be assigned", this.tsMinStrength, 6);
	gd.addNumericField("Maximal tile correlation strength to be assigned", this.tsMaxStrength, 6);		gd.addNumericField("Maximal tile correlation strength to be assigned", this.tsMaxStrength, 6);
	gd.addNumericField("Minimal surface strength at the tile location", this.tsMinSurface, 6);		gd.addNumericField("Minimal surface strength at the tile location", this.tsMinSurface, 6);
	gd.addNumericField("Allowed tile disparity correction: 1 increase, 2 - decrease, 3 - both directions",this.tsMoveDirs, 0);		gd.addNumericField("Allowed tile disparity correction: 1 increase, 2 - decrease, 3 - both directions",this.tsMoveDirs, 0);
	gd.addCheckbox ("Allow assignment when several surfaces fit", this.tsEnMulti);
	gd.addCheckbox ("Repeat multi-choice assignment while succeeding", this.tsLoopMulti);
	gd.addNumericField("Raise surface strengths ratio to this power when comparing candidates", this.tsSurfStrPow, 6);		gd.addNumericField("Raise surface strengths ratio to this power when comparing candidates", this.tsSurfStrPow, 6);
	gd.addNumericField("Add to strengths when calculating pull of assigned tiles", this.tsAddStrength, 6);		gd.addNumericField("Add to strengths when calculating pull of assigned tiles", this.tsAddStrength, 6);
	gd.addNumericField("Radius of influence (in tiles) of the previously assigned tiles", this.tsSigma, 6);		gd.addNumericField("Radius of influence (in tiles) of the previously assigned tiles", this.tsSigma, 6);
	gd.addNumericField("Maximal relative to radius distance to calculate influence", this.tsNSigma, 6);		gd.addNumericField("Maximal relative to radius distance to calculate influence", this.tsNSigma, 6);
	gd.addNumericField(" Additional pull of each surface ", this.tsMinPull, 6);		gd.addNumericField(" Additional pull of each surface ", this.tsMinPull, 6);
	gd.addNumericField("Minimal ratio of the best surface candidate to the next one to make selection", this.tsMinAdvantage, 6);		gd.addNumericField("Minimal ratio of the best surface candidate to the next one to make selection", this.tsMinAdvantage, 6);

			gd.addNumericField("Minimal size of a cluster to keep", this.tsClustSize, 0);
			gd.addNumericField("Minimal total weight of a cluster to keep", this.tsClustWeight, 6);
			gd.addNumericField("Minimal number of neighbors of unassigned tile to join (the farthest)", this.tsMinNeib, 0);
			gd.addNumericField("Maximal strength of the surrounded unassigned tile to join", this.tsMaxSurStrength, 6);
			gd.addCheckbox ("Include disabled tiles/borders when counting assigned neighbors", this.tsCountDis);
			gd.addCheckbox ("Allow assignment to the nearest surface with no competitors", this.tsEnSingle);
			gd.addCheckbox ("Allow assignment when several surfaces fit", this.tsEnMulti);
			gd.addCheckbox ("Remove weak clusters before growing", this.tsRemoveWeak1);
			gd.addCheckbox ("Assign tiles that have neighbors to the lowest disparity", this.tsGrowSurround);
			gd.addCheckbox ("Remove weak clusters after growing", this.tsRemoveWeak2);

			gd.addCheckbox ("Repeat multi-choice assignment while succeeding", this.tsLoopMulti);
	gd.addCheckbox ("Show results of tiles to surfaces assignment", this.tsShow);		gd.addCheckbox ("Show results of tiles to surfaces assignment", this.tsShow);

	gd.addCheckbox ("Test new mode after migration", this.dbg_migrate);		gd.addCheckbox ("Test new mode after migration", this.dbg_migrate);
	@@ -3468,6 +3518,7 @@ public class EyesisCorrectionParameters {
	this.plMaxEigen= gd.getNextNumber();		this.plMaxEigen= gd.getNextNumber();
	this.plDbgMerge= gd.getNextBoolean();		this.plDbgMerge= gd.getNextBoolean();
	this.plWorstWorsening= gd.getNextNumber();		this.plWorstWorsening= gd.getNextNumber();
			this.plOKMergeEigen= gd.getNextNumber();
	this.plWeakWorsening= gd.getNextNumber();		this.plWeakWorsening= gd.getNextNumber();
	this.plMutualOnly= gd.getNextBoolean();		this.plMutualOnly= gd.getNextBoolean();

	@@ -3515,15 +3566,26 @@ public class EyesisCorrectionParameters {
	this.tsMaxStrength= gd.getNextNumber();		this.tsMaxStrength= gd.getNextNumber();
	this.tsMinSurface= gd.getNextNumber();		this.tsMinSurface= gd.getNextNumber();
	this.tsMoveDirs= (int) gd.getNextNumber();		this.tsMoveDirs= (int) gd.getNextNumber();
	this.tsEnMulti= gd.getNextBoolean();
	this.tsLoopMulti= gd.getNextBoolean();
	this.tsSurfStrPow= gd.getNextNumber();		this.tsSurfStrPow= gd.getNextNumber();
	this.tsAddStrength= gd.getNextNumber();		this.tsAddStrength= gd.getNextNumber();
	this.tsSigma= gd.getNextNumber();		this.tsSigma= gd.getNextNumber();
	this.tsNSigma= gd.getNextNumber();		this.tsNSigma= gd.getNextNumber();
	this.tsMinPull= gd.getNextNumber();		this.tsMinPull= gd.getNextNumber();
	this.tsMinAdvantage= gd.getNextNumber();		this.tsMinAdvantage= gd.getNextNumber();

			this.tsClustSize= (int) gd.getNextNumber();
			this.tsClustWeight= gd.getNextNumber();
			this.tsMinNeib= (int) gd.getNextNumber();
			this.tsMaxSurStrength= gd.getNextNumber();
			this.tsCountDis= gd.getNextBoolean();
	this.tsReset = false; // Reset tiles to surfaces assignment		this.tsReset = false; // Reset tiles to surfaces assignment
			this.tsEnSingle= gd.getNextBoolean();
			this.tsEnMulti= gd.getNextBoolean();
			this.tsRemoveWeak1= gd.getNextBoolean();
			this.tsGrowSurround= gd.getNextBoolean();
			this.tsRemoveWeak2= gd.getNextBoolean();

			this.tsLoopMulti= gd.getNextBoolean();
	this.tsShow = gd.getNextBoolean();		this.tsShow = gd.getNextBoolean();

	this.dbg_migrate= gd.getNextBoolean();		this.dbg_migrate= gd.getNextBoolean();
	@@ -3553,15 +3615,25 @@ public class EyesisCorrectionParameters {
	gd.addNumericField("Maximal tile correlation strength to be assigned", this.tsMaxStrength, 6);		gd.addNumericField("Maximal tile correlation strength to be assigned", this.tsMaxStrength, 6);
	gd.addNumericField("Minimal surface strength at the tile location", this.tsMinSurface, 6);		gd.addNumericField("Minimal surface strength at the tile location", this.tsMinSurface, 6);
	gd.addNumericField("Allowed tile disparity correction: 1 increase, 2 - decrease, 3 - both directions",this.tsMoveDirs, 0);		gd.addNumericField("Allowed tile disparity correction: 1 increase, 2 - decrease, 3 - both directions",this.tsMoveDirs, 0);
	gd.addCheckbox ("Allow assignment when several surfaces fit", this.tsEnMulti);
	gd.addCheckbox ("Repeat multi-choice assignment while succeeding", this.tsLoopMulti);
	gd.addNumericField("Raise surface strengths ratio to this power when comparing candidates", this.tsSurfStrPow, 6);		gd.addNumericField("Raise surface strengths ratio to this power when comparing candidates", this.tsSurfStrPow, 6);
	gd.addNumericField("Add to strengths when calculating pull of assigned tiles", this.tsAddStrength, 6);		gd.addNumericField("Add to strengths when calculating pull of assigned tiles", this.tsAddStrength, 6);
	gd.addNumericField("Radius of influence (in tiles) of the previously assigned tiles", this.tsSigma, 6);		gd.addNumericField("Radius of influence (in tiles) of the previously assigned tiles", this.tsSigma, 6);
	gd.addNumericField("Maximal relative to radius distance to calculate influence", this.tsNSigma, 6);		gd.addNumericField("Maximal relative to radius distance to calculate influence", this.tsNSigma, 6);
	gd.addNumericField(" Additional pull of each surface ", this.tsMinPull, 6);		gd.addNumericField(" Additional pull of each surface ", this.tsMinPull, 6);
	gd.addNumericField("Minimal ratio of the best surface candidate to the next one to make selection", this.tsMinAdvantage, 6);		gd.addNumericField("Minimal ratio of the best surface candidate to the next one to make selection", this.tsMinAdvantage, 6);
			gd.addNumericField("Minimal size of a cluster to keep", this.tsClustSize, 0);
			gd.addNumericField("Minimal total weight of a cluster to keep", this.tsClustWeight, 6);
			gd.addNumericField("Minimal number of neighbors of unassigned tile to join (the farthest)", this.tsMinNeib, 0);
			gd.addNumericField("Maximal strength of the surrounded unassigned tile to join", this.tsMaxSurStrength, 6);
			gd.addCheckbox ("Include disabled tiles/borders when counting assigned neighbors", this.tsCountDis);
	gd.addCheckbox ("Reset tiles to surfaces assignment", false);		gd.addCheckbox ("Reset tiles to surfaces assignment", false);
			gd.addCheckbox ("Allow assignment to the nearest surface with no competitors", this.tsEnSingle);
			gd.addCheckbox ("Allow assignment when several surfaces fit", this.tsEnMulti);
			gd.addCheckbox ("Remove weak clusters before growing", this.tsRemoveWeak1);
			gd.addCheckbox ("Assign tiles that have neighbors to the lowest disparity", this.tsGrowSurround);
			gd.addCheckbox ("Remove weak clusters after growing", this.tsRemoveWeak2);

			gd.addCheckbox ("Repeat multi-choice assignment while succeeding", this.tsLoopMulti);
	gd.addCheckbox ("Show results of tiles to surfaces assignment", this.tsShow);		gd.addCheckbox ("Show results of tiles to surfaces assignment", this.tsShow);

	WindowTools.addScrollBars(gd);		WindowTools.addScrollBars(gd);
	@@ -3573,15 +3645,26 @@ public class EyesisCorrectionParameters {
	this.tsMaxStrength= gd.getNextNumber();		this.tsMaxStrength= gd.getNextNumber();
	this.tsMinSurface= gd.getNextNumber();		this.tsMinSurface= gd.getNextNumber();
	this.tsMoveDirs= (int) gd.getNextNumber();		this.tsMoveDirs= (int) gd.getNextNumber();
	this.tsEnMulti= gd.getNextBoolean();
	this.tsLoopMulti= gd.getNextBoolean();
	this.tsSurfStrPow= gd.getNextNumber();		this.tsSurfStrPow= gd.getNextNumber();
	this.tsAddStrength= gd.getNextNumber();		this.tsAddStrength= gd.getNextNumber();
	this.tsSigma= gd.getNextNumber();		this.tsSigma= gd.getNextNumber();
	this.tsNSigma= gd.getNextNumber();		this.tsNSigma= gd.getNextNumber();
	this.tsMinPull= gd.getNextNumber();		this.tsMinPull= gd.getNextNumber();
	this.tsMinAdvantage= gd.getNextNumber();		this.tsMinAdvantage= gd.getNextNumber();

			this.tsClustSize= (int) gd.getNextNumber();
			this.tsClustWeight= gd.getNextNumber();
			this.tsMinNeib= (int) gd.getNextNumber();
			this.tsMaxSurStrength= gd.getNextNumber();
			this.tsCountDis= gd.getNextBoolean();
	this.tsReset= gd.getNextBoolean();		this.tsReset= gd.getNextBoolean();
			this.tsEnSingle= gd.getNextBoolean();
			this.tsEnMulti= gd.getNextBoolean();
			this.tsRemoveWeak1= gd.getNextBoolean();
			this.tsGrowSurround= gd.getNextBoolean();
			this.tsRemoveWeak2= gd.getNextBoolean();

			this.tsLoopMulti= gd.getNextBoolean();
	this.tsShow = gd.getNextBoolean();		this.tsShow = gd.getNextBoolean();
	return true;		return true;
	}		}

src/main/java/SuperTiles.java

+3 −1

Original line number	Original line	Diff line number	Diff line
	@@ -3641,6 +3641,7 @@ public class SuperTiles{
	* Find mutual links between multi-layer planes for supertiles. requires that for each plane there are calculated smalles eigenvalues		* Find mutual links between multi-layer planes for supertiles. requires that for each plane there are calculated smalles eigenvalues
	* for merging with each plane for each of 8 neighbors		* for merging with each plane for each of 8 neighbors
	* @param rquality maximal degradation by merging (does not depend on the total weight)		* @param rquality maximal degradation by merging (does not depend on the total weight)
			* @param okMergeEigen if result eigenvalue of the merged planes is below, OK to bypass worst worsening
	* @param maxEigen maximal eigenvalue of each of the merged planes		* @param maxEigen maximal eigenvalue of each of the merged planes
	* @param minWeight minimal weight of each of the planes		* @param minWeight minimal weight of each of the planes
	* @param debugLevel debug level		* @param debugLevel debug level
	@@ -3650,6 +3651,7 @@ public class SuperTiles{
	public void selectNeighborPlanesMutual(		public void selectNeighborPlanesMutual(
	final double rquality,		final double rquality,
	final double weakWorsening,		final double weakWorsening,
			final double okMergeEigen,
	final double dispNorm,		final double dispNorm,
	final double maxEigen, // maximal eigenvalue of planes to consider		final double maxEigen, // maximal eigenvalue of planes to consider
	final double minWeight, // minimal pain weight to consider		final double minWeight, // minimal pain weight to consider
	@@ -3759,7 +3761,7 @@ public class SuperTiles{
	w2); // double w2)		w2); // double w2)
	double this_rq_norm = this_rq;		double this_rq_norm = this_rq;
	if ((w1 + w2) < weakWorsening) this_rq_norm *= (w1 + w2) / weakWorsening; // forgive more for weak planes		if ((w1 + w2) < weakWorsening) this_rq_norm *= (w1 + w2) / weakWorsening; // forgive more for weak planes
	if (this_rq_norm <= rquality) {		if ((this_rq_norm <= rquality) \|\|(merge_ev[np] <= okMergeEigen)) {
	this_rq /= (w1 + w2); // for comparision reduce this value for stronger planes		this_rq /= (w1 + w2); // for comparision reduce this value for stronger planes
	if (Double.isNaN(best_rqual) \|\| (this_rq < best_rqual)){ // OK if Double.isNaN(this_rq[np])		if (Double.isNaN(best_rqual) \|\| (this_rq < best_rqual)){ // OK if Double.isNaN(this_rq[np])
	best_rqual = this_rq;		best_rqual = this_rq;

src/main/java/TileProcessor.java

+156 −79

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src/main/java/TileSurface.java

+259 −48

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