more on tile assignments (98b0dee4) · Commits · Elphel / imagej-elphel

src/main/java/EyesisCorrectionParameters.java

+144 −2

Original line number	Diff line number	Diff line
		@@ -2351,6 +2351,15 @@ public class EyesisCorrectionParameters {
		public int tsConsensAgree = 1; // Minimal number of assignments to agree

		// Tile assignment parameters
		public double taMinFgBg = 0.1; // Minimal foreground/ background separation to look for weak FG edge
		public double taMinFgEdge = 0.2; // Minimal foreground edge strength (stronger edges will have proportionally smaller costs)
		public double taMinColSep = 0.05; // Minimal surface separation that requires color change
		public double taMinColDiff = 0.01; // Minimal color variation (larger proportionally reduces cost)
		public double taOutlier = 1.0; // Disparity difference limit
		public double taDiffPwr = 0.25; // Strength power when calculating disparity error
		public double taBestPwr = 0.0; // Strength power when calculating disparity error over best
		public double taDiff9Pwr = 0.5; // Strength power when calculating disparity error for group of 9

		public double taCostEmpty = 1.0; // Cost of a tile that is not assigned
		public double taCostNoLink = 1.0; // Cost of a tile not having any neighbor in particular direction
		public double taCostSwitch = 1.0; // Cost of a tile switching to a neighbor that does not have a link
		@@ -2362,6 +2371,16 @@ public class EyesisCorrectionParameters {
		public double taCostFlaps = 1.0; // Cost of using supertile "flaps" (not in the center 8x8 tiles area)
		public double taCostMismatch = 1.0; // Cost of a measurement layer not having same layer in the same location or near

		public boolean taEnEmpty = true; // Enable cost of a tile that is not assigned
		public boolean taEnNoLink = true; // Enable cost of a tile not having any neighbor in particular direction
		public boolean taEnSwitch = true; // Enable cost of a tile switching to a neighbor that does not have a link
		public boolean taEnColor = true; // Enable cost of a tile switching to a disconnected neighbor divided by a color mismatch
		public boolean taEnDiff = true; // Enable cost of a weighted normalized tile disparity error
		public boolean taEnDiffBest = true; // Enable cost of a weighted normalized tile disparity error above best surface
		public boolean taEnDiff9 = true; // Enable cost of a weighted normalized tile disparity error for tile and 8 neighbors (DC)
		public boolean taEnWeakFgnd = true; // Enable cost of a weak foreground edge
		public boolean taEnFlaps = true; // Enable cost of using supertile "flaps" (not in the center 8x8 tiles area)
		public boolean taEnMismatch = false; // Enable cost of a measurement layer not having same layer in the same location or near



		@@ -2791,6 +2810,15 @@ public class EyesisCorrectionParameters {
		properties.setProperty(prefix+"tsConsensMode", this.tsConsensMode +"");
		properties.setProperty(prefix+"tsConsensAgree", this.tsConsensAgree +"");

		properties.setProperty(prefix+"taMinFgBg", this.taMinFgBg +"");
		properties.setProperty(prefix+"taMinFgEdge", this.taMinFgEdge +"");
		properties.setProperty(prefix+"taMinColSep", this.taMinColSep +"");
		properties.setProperty(prefix+"taMinColDiff", this.taMinColDiff +"");
		properties.setProperty(prefix+"taOutlier", this.taOutlier +"");
		properties.setProperty(prefix+"taDiffPwr", this.taDiffPwr +"");
		properties.setProperty(prefix+"taBestPwr", this.taBestPwr +"");
		properties.setProperty(prefix+"taDiff9Pwr", this.taDiff9Pwr +"");

		properties.setProperty(prefix+"taCostEmpty", this.taCostEmpty +"");
		properties.setProperty(prefix+"taCostNoLink", this.taCostNoLink +"");
		properties.setProperty(prefix+"taCostSwitch", this.taCostSwitch +"");
		@@ -2802,6 +2830,18 @@ public class EyesisCorrectionParameters {
		properties.setProperty(prefix+"taCostFlaps", this.taCostFlaps +"");
		properties.setProperty(prefix+"taCostMismatch", this.taCostMismatch +"");

		properties.setProperty(prefix+"taEnEmpty", this.taEnEmpty +"");
		properties.setProperty(prefix+"taEnNoLink", this.taEnNoLink +"");
		properties.setProperty(prefix+"taEnSwitch", this.taEnSwitch +"");
		properties.setProperty(prefix+"taEnColor", this.taEnColor +"");
		properties.setProperty(prefix+"taEnDiff", this.taEnDiff +"");
		properties.setProperty(prefix+"taEnDiffBest", this.taEnDiffBest +"");
		properties.setProperty(prefix+"taEnDiff9", this.taEnDiff9 +"");
		properties.setProperty(prefix+"taEnWeakFgnd", this.taEnWeakFgnd +"");
		properties.setProperty(prefix+"taEnFlaps", this.taEnFlaps +"");
		properties.setProperty(prefix+"taEnMismatch", this.taEnMismatch +"");


		properties.setProperty(prefix+"dbg_migrate", this.dbg_migrate+"");

		properties.setProperty(prefix+"show_ortho_combine", this.show_ortho_combine+"");
		@@ -3222,6 +3262,15 @@ public class EyesisCorrectionParameters {
		if (properties.getProperty(prefix+"tsConsensMode")!=null) this.tsConsensMode=Integer.parseInt(properties.getProperty(prefix+"tsConsensMode"));
		if (properties.getProperty(prefix+"tsConsensAgree")!=null) this.tsConsensAgree=Integer.parseInt(properties.getProperty(prefix+"tsConsensAgree"));

		if (properties.getProperty(prefix+"taMinFgBg")!=null) this.taMinFgBg=Double.parseDouble(properties.getProperty(prefix+"taMinFgBg"));
		if (properties.getProperty(prefix+"taMinFgEdge")!=null) this.taMinFgEdge=Double.parseDouble(properties.getProperty(prefix+"taMinFgEdge"));
		if (properties.getProperty(prefix+"taMinColSep")!=null) this.taMinColSep=Double.parseDouble(properties.getProperty(prefix+"taMinColSep"));
		if (properties.getProperty(prefix+"taMinColDiff")!=null) this.taMinColDiff=Double.parseDouble(properties.getProperty(prefix+"taMinColDiff"));
		if (properties.getProperty(prefix+"taOutlier")!=null) this.taOutlier=Double.parseDouble(properties.getProperty(prefix+"taOutlier"));
		if (properties.getProperty(prefix+"taDiffPwr")!=null) this.taDiffPwr=Double.parseDouble(properties.getProperty(prefix+"taDiffPwr"));
		if (properties.getProperty(prefix+"taBestPwr")!=null) this.taBestPwr=Double.parseDouble(properties.getProperty(prefix+"taBestPwr"));
		if (properties.getProperty(prefix+"taDiff9Pwr")!=null) this.taDiff9Pwr=Double.parseDouble(properties.getProperty(prefix+"taDiff9Pwr"));

		if (properties.getProperty(prefix+"taCostEmpty")!=null) this.taCostEmpty=Double.parseDouble(properties.getProperty(prefix+"taCostEmpty"));
		if (properties.getProperty(prefix+"taCostNoLink")!=null) this.taCostNoLink=Double.parseDouble(properties.getProperty(prefix+"taCostNoLink"));
		if (properties.getProperty(prefix+"taCostSwitch")!=null) this.taCostSwitch=Double.parseDouble(properties.getProperty(prefix+"taCostSwitch"));
		@@ -3233,6 +3282,18 @@ public class EyesisCorrectionParameters {
		if (properties.getProperty(prefix+"taCostFlaps")!=null) this.taCostFlaps=Double.parseDouble(properties.getProperty(prefix+"taCostFlaps"));
		if (properties.getProperty(prefix+"taCostMismatch")!=null) this.taCostMismatch=Double.parseDouble(properties.getProperty(prefix+"taCostMismatch"));

		if (properties.getProperty(prefix+"taEnEmpty")!=null) this.taEnEmpty=Boolean.parseBoolean(properties.getProperty(prefix+"taEnEmpty"));
		if (properties.getProperty(prefix+"taEnNoLink")!=null) this.taEnNoLink=Boolean.parseBoolean(properties.getProperty(prefix+"taEnNoLink"));
		if (properties.getProperty(prefix+"taEnSwitch")!=null) this.taEnSwitch=Boolean.parseBoolean(properties.getProperty(prefix+"taEnSwitch"));
		if (properties.getProperty(prefix+"taEnColor")!=null) this.taEnColor=Boolean.parseBoolean(properties.getProperty(prefix+"taEnColor"));
		if (properties.getProperty(prefix+"taEnDiff")!=null) this.taEnDiff=Boolean.parseBoolean(properties.getProperty(prefix+"taEnDiff"));
		if (properties.getProperty(prefix+"taEnDiffBest")!=null) this.taEnDiffBest=Boolean.parseBoolean(properties.getProperty(prefix+"taEnDiffBest"));
		if (properties.getProperty(prefix+"taEnDiff9")!=null) this.taEnDiff9=Boolean.parseBoolean(properties.getProperty(prefix+"taEnDiff9"));
		if (properties.getProperty(prefix+"taEnWeakFgnd")!=null) this.taEnWeakFgnd=Boolean.parseBoolean(properties.getProperty(prefix+"taEnWeakFgnd"));
		if (properties.getProperty(prefix+"taEnFlaps")!=null) this.taEnFlaps=Boolean.parseBoolean(properties.getProperty(prefix+"taEnFlaps"));
		if (properties.getProperty(prefix+"taEnMismatch")!=null) this.taEnMismatch=Boolean.parseBoolean(properties.getProperty(prefix+"taEnMismatch"));


		if (properties.getProperty(prefix+"dbg_migrate")!=null) this.dbg_migrate=Boolean.parseBoolean(properties.getProperty(prefix+"dbg_migrate"));

		if (properties.getProperty(prefix+"show_ortho_combine")!=null) this.show_ortho_combine=Boolean.parseBoolean(properties.getProperty(prefix+"show_ortho_combine"));
		@@ -3685,6 +3746,15 @@ public class EyesisCorrectionParameters {
		gd.addNumericField("Minimal number of assignments to agree", this.tsConsensAgree, 0);

		gd.addMessage ("--- Tile assignment parameters ---");
		gd.addNumericField("Minimal foreground/ background separation to look for weak FG edge", this.taMinFgBg, 6);
		gd.addNumericField("Minimal foreground edge strength (stronger edges will have proportionally smaller costs)", this.taMinFgEdge, 6);
		gd.addNumericField("Minimal surface separation that requires color change", this.taMinColSep, 6);
		gd.addNumericField("Minimal color variation (larger proportionally reduces cost)", this.taMinColDiff, 6);
		gd.addNumericField("Disparity difference limit (to handle outliers)", this.taOutlier, 6);
		gd.addNumericField("Strength power when calculating disparity error", this.taDiffPwr, 6);
		gd.addNumericField("Strength power when calculating disparity error over best", this.taBestPwr, 6);
		gd.addNumericField("Strength power when calculating disparity error for group of 9", this.taDiff9Pwr, 6);

		gd.addNumericField("Cost of a tile that is not assigned", this.taCostEmpty, 6);
		gd.addNumericField("Cost of a tile not having any neighbor in particular direction", this.taCostNoLink, 6);
		gd.addNumericField("Cost of a tile switching to a neighbor that does not have a link", this.taCostSwitch, 6);
		@@ -3696,6 +3766,17 @@ public class EyesisCorrectionParameters {
		gd.addNumericField("Cost of using supertile \"flaps\" (not in the center 8x8 tiles area)", this.taCostFlaps, 6);
		gd.addNumericField("Cost of a measurement layer not having same layer in the same location or near", this.taCostMismatch, 6);

		gd.addCheckbox ("Cost of a tile that is not assigned", this.taEnEmpty);
		gd.addCheckbox ("Cost of a tile not having any neighbor in particular direction", this.taEnNoLink);
		gd.addCheckbox ("Cost of a tile switching to a neighbor that does not have a link", this.taEnSwitch);
		gd.addCheckbox ("Cost of a tile switching to a disconnected neighbor divided by a color", this.taEnColor);
		gd.addCheckbox ("Cost of a weighted normalized tile disparity error", this.taEnDiff);
		gd.addCheckbox ("Cost of a weighted normalized tile disparity error above best surface", this.taEnDiffBest);
		gd.addCheckbox ("Cost of a weighted normalized tile disparity error for tile and 8 neighbors (DC)",this.taEnDiff9);
		gd.addCheckbox ("Cost of a weak foreground edge", this.taEnWeakFgnd);
		gd.addCheckbox ("Cost of using supertile \"flaps\" (not in the center 8x8 tiles area)", this.taEnFlaps);
		gd.addCheckbox ("Cost of a measurement layer not having same layer in the same location or near", this.taEnMismatch);

		gd.addCheckbox ("Test new mode after migration", this.dbg_migrate);

		gd.addMessage ("--- Other debug images ---");
		@@ -4124,6 +4205,15 @@ public class EyesisCorrectionParameters {
		this.tsConsensMode = (int) gd.getNextNumber();
		this.tsConsensAgree = (int) gd.getNextNumber();

		this.taMinFgBg= gd.getNextNumber();
		this.taMinFgEdge= gd.getNextNumber();
		this.taMinColSep= gd.getNextNumber();
		this.taMinColDiff= gd.getNextNumber();
		this.taOutlier= gd.getNextNumber();
		this.taDiffPwr= gd.getNextNumber();
		this.taBestPwr= gd.getNextNumber();
		this.taDiff9Pwr= gd.getNextNumber();

		this.taCostEmpty= gd.getNextNumber();
		this.taCostNoLink= gd.getNextNumber();
		this.taCostSwitch= gd.getNextNumber();
		@@ -4135,6 +4225,17 @@ public class EyesisCorrectionParameters {
		this.taCostFlaps= gd.getNextNumber();
		this.taCostMismatch= gd.getNextNumber();

		this.taEnEmpty= gd.getNextBoolean();
		this.taEnNoLink= gd.getNextBoolean();
		this.taEnSwitch= gd.getNextBoolean();
		this.taEnColor= gd.getNextBoolean();
		this.taEnDiff= gd.getNextBoolean();
		this.taEnDiffBest= gd.getNextBoolean();
		this.taEnDiff9= gd.getNextBoolean();
		this.taEnWeakFgnd= gd.getNextBoolean();
		this.taEnFlaps= gd.getNextBoolean();
		this.taEnMismatch= gd.getNextBoolean();

		this.dbg_migrate= gd.getNextBoolean();

		this.show_ortho_combine= gd.getNextBoolean();
		@@ -4199,6 +4300,15 @@ public class EyesisCorrectionParameters {
		gd.addNumericField("Minimal number of assignments to agree", this.tsConsensAgree, 0);

		gd.addMessage ("--- Tile assignment parameters ---");
		gd.addNumericField("Minimal foreground/ background separation to look for weak FG edge", this.taMinFgBg, 6);
		gd.addNumericField("Minimal foreground edge strength (stronger edges will have proportionally smaller costs)", this.taMinFgEdge, 6);
		gd.addNumericField("Minimal surface separation that requires color change", this.taMinColSep, 6);
		gd.addNumericField("Minimal color variation (larger proportionally reduces cost)", this.taMinColDiff, 6);
		gd.addNumericField("Disparity difference limit (to handle outliers)", this.taOutlier, 6);
		gd.addNumericField("Strength power when calculating disparity error", this.taDiffPwr, 6);
		gd.addNumericField("Strength power when calculating disparity error over best", this.taBestPwr, 6);
		gd.addNumericField("Strength power when calculating disparity error for group of 9", this.taDiff9Pwr, 6);

		gd.addNumericField("Cost of a tile that is not assigned", this.taCostEmpty, 6);
		gd.addNumericField("Cost of a tile not having any neighbor in particular direction", this.taCostNoLink, 6);
		gd.addNumericField("Cost of a tile switching to a neighbor that does not have a link", this.taCostSwitch, 6);
		@@ -4210,6 +4320,17 @@ public class EyesisCorrectionParameters {
		gd.addNumericField("Cost of using supertile \"flaps\" (not in the center 8x8 tiles area)", this.taCostFlaps, 6);
		gd.addNumericField("Cost of a measurement layer not having same layer in the same location or near", this.taCostMismatch, 6);

		gd.addCheckbox ("Cost of a tile that is not assigned", this.taEnEmpty);
		gd.addCheckbox ("Cost of a tile not having any neighbor in particular direction", this.taEnNoLink);
		gd.addCheckbox ("Cost of a tile switching to a neighbor that does not have a link", this.taEnSwitch);
		gd.addCheckbox ("Cost of a tile switching to a disconnected neighbor divided by a color", this.taEnColor);
		gd.addCheckbox ("Cost of a weighted normalized tile disparity error", this.taEnDiff);
		gd.addCheckbox ("Cost of a weighted normalized tile disparity error above best surface", this.taEnDiffBest);
		gd.addCheckbox ("Cost of a weighted normalized tile disparity error for tile and 8 neighbors (DC)",this.taEnDiff9);
		gd.addCheckbox ("Cost of a weak foreground edge", this.taEnWeakFgnd);
		gd.addCheckbox ("Cost of using supertile \"flaps\" (not in the center 8x8 tiles area)", this.taEnFlaps);
		gd.addCheckbox ("Cost of a measurement layer not having same layer in the same location or near", this.taEnMismatch);

		WindowTools.addScrollBars(gd);
		gd.showDialog();
		if (gd.wasCanceled()) return false;
		@@ -4255,6 +4376,15 @@ public class EyesisCorrectionParameters {
		this.tsConsensMode = (int) gd.getNextNumber();
		this.tsConsensAgree = (int) gd.getNextNumber();

		this.taMinFgBg= gd.getNextNumber();
		this.taMinFgEdge= gd.getNextNumber();
		this.taMinColSep= gd.getNextNumber();
		this.taMinColDiff= gd.getNextNumber();
		this.taOutlier= gd.getNextNumber();
		this.taDiffPwr= gd.getNextNumber();
		this.taBestPwr= gd.getNextNumber();
		this.taDiff9Pwr= gd.getNextNumber();

		this.taCostEmpty= gd.getNextNumber();
		this.taCostNoLink= gd.getNextNumber();
		this.taCostSwitch= gd.getNextNumber();
		@@ -4265,6 +4395,18 @@ public class EyesisCorrectionParameters {
		this.taCostWeakFgnd= gd.getNextNumber();
		this.taCostFlaps= gd.getNextNumber();
		this.taCostMismatch= gd.getNextNumber();

		this.taEnEmpty= gd.getNextBoolean();
		this.taEnNoLink= gd.getNextBoolean();
		this.taEnSwitch= gd.getNextBoolean();
		this.taEnColor= gd.getNextBoolean();
		this.taEnDiff= gd.getNextBoolean();
		this.taEnDiffBest= gd.getNextBoolean();
		this.taEnDiff9= gd.getNextBoolean();
		this.taEnWeakFgnd= gd.getNextBoolean();
		this.taEnFlaps= gd.getNextBoolean();
		this.taEnMismatch= gd.getNextBoolean();

		return true;
		}
		}

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