Release-1.7.6.1-20120220

INSTALL

-DOXYGEN Version 1.7.6.1-20120122
+DOXYGEN Version 1.7.6.1-20120220
 
 Please read the installation section of the manual 
 (http://www.doxygen.org/install.html) for instructions.
 
 --------
-Dimitri van Heesch (22 January 2012)
+Dimitri van Heesch (20 February 2012)

Makefile.in

@@ -31,7 +31,7 @@ distclean: clean
 	-rm -f latex
 	-rm -f objects/*.o
 	-rm -f src/Makefile.doxygen src/Makefile.libdoxygen 
-	-rm -f src/Makefile.libdoxycfg
+	-rm -f src/Makefile.libdoxycfg src/libdoxycfg.t src/libdoxygen.t
 	-rm -f libmd5/Makefile.libmd5
 	-rm -f Makefile qtools/Makefile src/Makefile examples/Makefile doc/Makefile 
 	-rm -f .makeconfig .tmakeconfig

Makefile.win_make.in

@@ -13,7 +13,8 @@ clean:
 distclean: clean
 	-del src\Makefile.libdoxygen \
 	     src\Makefile.doxygen \
-	     src\Makefile.libdoxycfg
+	     src\Makefile.libdoxycfg \
+	     src\libdoxycfg.t src\libdoxygen.t
 	-del Makefile src\Makefile examples\Makefile doc\Makefile
 	-del src\libdoxygen.pro src\doxygen.pro src\libdoxycfg.pro
 	-del src\version.cpp

Makefile.win_nmake.in

@@ -25,7 +25,8 @@ clean: FORCE
 distclean: clean
 	-del src\Makefile.libdoxygen \
 	     src\Makefile.doxygen \
-	     src\Makefile.libdoxycfg
+	     src\Makefile.libdoxycfg \
+	     src\libdoxycfg.t src\libdoxygen.t
 	-del Makefile src\Makefile examples\Makefile doc\Makefile
 	-del src\libdoxygen.pro src\doxygen.pro src\libdoxycfg.pro
 	-del src\version.cpp

README

-DOXYGEN Version 1.7.6.1_20120122
+DOXYGEN Version 1.7.6.1_20120220
 
 Please read INSTALL for compilation instructions.
 
@@ -26,4 +26,4 @@ forum.
 
 Enjoy,
 
-Dimitri van Heesch (dimitri@stack.nl) (22 January 2012)
+Dimitri van Heesch (dimitri@stack.nl) (20 February 2012)

addon/doxmlparser/src/basehandler.h

@@ -3,7 +3,7 @@
  * $Id$
  *
  *
- * Copyright (C) 1997-2006 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

addon/doxmlparser/src/baseiterator.h

@@ -3,7 +3,7 @@
  * $Id$
  *
  *
- * Copyright (C) 1997-2006 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

addon/doxmlparser/src/compoundhandler.cpp

@@ -3,7 +3,7 @@
  * $Id$
  *
  *
- * Copyright (C) 1997-2006 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

addon/doxmlparser/src/compoundhandler.h

@@ -3,7 +3,7 @@
  * $Id$
  *
  *
- * Copyright (C) 1997-2006 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

addon/doxmlparser/src/dochandler.cpp

@@ -3,7 +3,7 @@
  * $Id$
  *
  *
- * Copyright (C) 1997-2006 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

addon/doxmlparser/src/dochandler.h

 /******************************************************************************
  *
- * $Id:$
+ * $Id$
  *
  *
- * Copyright (C) 1997-2006 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

addon/doxmlparser/src/graphhandler.h

 /******************************************************************************
  *
- * $Id:$
+ * $Id$
  *
  *
- * Copyright (C) 1997-2006 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

addon/doxmlparser/src/linkedtexthandler.cpp

@@ -3,7 +3,7 @@
  * $Id$
  *
  *
- * Copyright (C) 1997-2006 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

addon/doxmlparser/src/linkedtexthandler.h

@@ -3,7 +3,7 @@
  * $Id$
  *
  *
- * Copyright (C) 1997-2006 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

addon/doxmlparser/src/loamhandler.h

 /******************************************************************************
  *
- * $Id:$
+ * $Id$
  *
  *
- * Copyright (C) 1997-2006 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

addon/doxmlparser/src/mainhandler.cpp

@@ -3,7 +3,7 @@
  * $Id$
  *
  *
- * Copyright (C) 1997-2006 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

addon/doxmlparser/src/mainhandler.h

 /******************************************************************************
  *
- * $Id:$
+ * $Id$
  *
  *
- * Copyright (C) 1997-2006 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

addon/doxmlparser/src/memberhandler.cpp

@@ -3,7 +3,7 @@
  * $Id$
  *
  *
- * Copyright (C) 1997-2006 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

addon/doxmlparser/src/memberhandler.h

 /******************************************************************************
  *
- * $Id:$
+ * $Id$
  *
  *
- * Copyright (C) 1997-2006 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

addon/doxmlparser/src/paramhandler.cpp

@@ -3,7 +3,7 @@
  * $Id$
  *
  *
- * Copyright (C) 1997-2006 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

addon/doxmlparser/src/paramhandler.h

 /******************************************************************************
  *
- * $Id:$
+ * $Id$
  *
  *
- * Copyright (C) 1997-2006 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

addon/doxmlparser/src/sectionhandler.cpp

@@ -3,7 +3,7 @@
  * $Id$
  *
  *
- * Copyright (C) 1997-2006 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

addon/doxmlparser/src/sectionhandler.h

 /******************************************************************************
  *
- * $Id:$
+ * $Id$
  *
  *
- * Copyright (C) 1997-2006 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

addon/doxyapp/doxyapp.cpp

 /******************************************************************************
  *
- * Copyright (C) 1997-2006 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

addon/doxywizard/Makefile.in

 #
 # 
 #
-# Copyright (C) 1997-2011 by Dimitri van Heesch.
+# Copyright (C) 1997-2012 by Dimitri van Heesch.
 # 
 # Permission to use, copy, modify, and distribute this software and its
 # documentation under the terms of the GNU General Public License is hereby 

addon/doxywizard/config.l

@@ -2,7 +2,7 @@
  *
  * $Id: config_templ.l,v 1.8 2001/01/01 10:15:16 root Exp $
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

addon/doxywizard/doxywizard.cpp

@@ -191,7 +191,7 @@ void MainWindow::about()
   t << QString::fromAscii("<qt><center>A tool to configure and run doxygen version ")+
        QString::fromAscii(versionString)+
        QString::fromAscii(" on your source files.</center><p><br>"
-       "<center>Written by<br> Dimitri van Heesch<br>&copy; 2000-2011</center><p>"
+       "<center>Written by<br> Dimitri van Heesch<br>&copy; 2000-2012</center><p>"
        "</qt>");
   QMessageBox::about(this,tr("Doxygen GUI"),msg);
 }

addon/doxywizard/inputbool.cpp

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

addon/doxywizard/inputbool.h

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

addon/doxywizard/inputint.cpp

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

addon/doxywizard/inputint.h

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

addon/doxywizard/inputstring.cpp

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

addon/doxywizard/inputstring.h

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

addon/doxywizard/inputstrlist.cpp

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

addon/doxywizard/inputstrlist.h

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

addon/doxywizard/version.h

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

addon/doxywizard/wizard.h

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

configure

@@ -2,7 +2,7 @@
 #
 # $Id$
 #
-# Copyright (C) 1997-2011 by Dimitri van Heesch.
+# Copyright (C) 1997-2012 by Dimitri van Heesch.
 # 
 # Permission to use, copy, modify, and distribute this software and its
 # documentation under the terms of the GNU General Public License is hereby 
@@ -20,7 +20,7 @@ doxygen_version_minor=7
 doxygen_version_revision=6.1
 
 #NOTE: Setting version_mmn to "NO" will omit mmn info from the package.
-doxygen_version_mmn=20120122
+doxygen_version_mmn=20120220
 
 bin_dirs=`echo $PATH | sed -e "s/:/ /g"`
 
@@ -626,6 +626,9 @@ EOF
      echo "  Created $DST from $SRC..."
 done
 
+cat src/libdoxycfg.t.in | sed -e "s|%%FLEX%%|$f_flex|g" -e "s|%%BISON%%|$f_bison|g" > src/libdoxycfg.t
+cat src/libdoxygen.t.in | sed -e "s|%%FLEX%%|$f_flex|g" -e "s|%%BISON%%|$f_bison|g" > src/libdoxygen.t
+
 f_inprofiles="qtools/qtools.pro.in src/libdoxygen.pro.in src/libdoxycfg.pro.in src/doxygen.pro.in addon/doxywizard/doxywizard.pro.in addon/doxmlparser/src/doxmlparser.pro.in addon/doxmlparser/test/xmlparse.pro.in addon/doxmlparser/examples/metrics/metrics.pro.in libmd5/libmd5.pro.in addon/doxyapp/doxyapp.pro.in" 
 
 for i in $f_inprofiles ; do

doc/Makefile.in

 #
 # 
 #
-# Copyright (C) 1997-2011 by Dimitri van Heesch.
+# Copyright (C) 1997-2012 by Dimitri van Heesch.
 #
 # Permission to use, copy, modify, and distribute this software and its
 # documentation under the terms of the GNU General Public License is hereby 

doc/Makefile.latex

 #
 # 
 #
-# Copyright (C) 1997-2011 by Dimitri van Heesch.
+# Copyright (C) 1997-2012 by Dimitri van Heesch.
 #
 # Permission to use, copy, modify, and distribute this software and its
 # documentation under the terms of the GNU General Public License is hereby 

doc/Makefile.win_make.in

 #
 # 
 #
-# Copyright (C) 1997-2011 by Dimitri van Heesch.
+# Copyright (C) 1997-2012 by Dimitri van Heesch.
 #
 # Permission to use, copy, modify, and distribute this software and its
 # documentation under the terms of the GNU General Public License is hereby 

doc/Makefile.win_nmake.in

 #
 # 
 #
-# Copyright (C) 1997-2011 by Dimitri van Heesch.
+# Copyright (C) 1997-2012 by Dimitri van Heesch.
 #
 # Permission to use, copy, modify, and distribute this software and its
 # documentation under the terms of the GNU General Public License is hereby 

doc/arch.doc

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

doc/autolink.doc

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 
@@ -16,6 +16,8 @@
  */
 /*! \page autolink Automatic link generation
 
+  \tableofcontents
+
   Most documentation systems have special `see also' sections where links
   to other pieces of documentation can be inserted.
   Although doxygen also has a command to start such a section (See section
@@ -114,7 +116,7 @@
   for the corresponding HTML documentation that is generated by Doxygen.
   \endhtmlonly
 
-  \section resolving typedefs.
+  \section resolving typedefs
 
   Typedefs that involve classes, structs and unions, like
 \verbatim

doc/commands.doc

@@ -2,7 +2,7 @@
  *
  *
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby
@@ -31,7 +31,7 @@ Each argument has a certain range:
 <li>If {curly} braces are used the argument extends until the next paragraph.
     Paragraphs are delimited by a blank line or by a section indicator.
 </ul>
-If in addition to the aboveargument specifiers [square] brackets are used the argument is optional.
+If in addition to the above argument specifiers [square] brackets are used the argument is optional.
 
 Here is an alphabetically sorted list of all commands with references to their
 documentation:
@@ -166,6 +166,7 @@ documentation:
 \refitem cmdsubpage \\subpage
 \refitem cmdsubsection \\subsection
 \refitem cmdsubsubsection \\subsubsection
+\refitem cmdtableofcontents \\tableofcontents
 \refitem cmdtest \\test
 \refitem cmdthrow \\throw
 \refitem cmdthrows \\throws
@@ -192,6 +193,7 @@ documentation:
 \refitem cmdhash \\\#
 \refitem cmdperc \\\%
 \refitem cmdquot \\\"
+\refitem cmdchardot \\\.
 \refitem cmddcolon \::
 \endsecreflist
 
@@ -387,7 +389,7 @@ Structural indicators
   \ref cfg_example_path "EXAMPLE_PATH" tag, you can include part of the absolute path
   to disambiguate it.
 
-  If more that one source file is needed for the example,
+  If more than one source file is needed for the example,
   the \\include command can be used.
 
   \par Example:
@@ -494,7 +496,7 @@ Structural indicators
   the documentation is in front of the definition. The arguments of
   this command are the same as the second and third argument of
   \ref cmdclass "\\class".
-  The \<header-file\> name refers to the file that should by included by the
+  The \<header-file\> name refers to the file that should be included by the
   application to obtain the definition of the class, struct, or union.
   The \<header-name\> argument can be used to overwrite the
   name of the link that is used in the class documentation to something other
@@ -535,7 +537,7 @@ Structural indicators
   By default the value of a define and the initializer of a variable
   are displayed unless they are longer than 30 lines. By putting
   this command in a comment block of a define or variable, the
-  initializer is always hidden. The maximum number of initalization linens
+  initializer is always hidden. The maximum number of initialization lines
   can be changed by means of the configuration parameter
   \ref cfg_max_initializer_lines "MAX_INITIALIZER_LINES", the default value is
   30.
@@ -922,7 +924,7 @@ Structural indicators
   are only displayed if they are less than 30 lines long. By putting
   this command in a comment block of a define or variable, the
   initializer is shown unconditionally.
-  The maximum number of initalization linens
+  The maximum number of initialization lines
   can be changed by means of the configuration parameter
   \ref cfg_max_initializer_lines "MAX_INITIALIZER_LINES", the default value is
   30.
@@ -945,7 +947,7 @@ Structural indicators
   \addindex \\typedef
   Indicates that a comment block contains documentation for a
   typedef (either global or as a member of a class).
-  This command is equivalent to \\var, \\propery, and \\fn.
+  This command is equivalent to \\var, \\property, and \\fn.
 
   \sa section \ref cmdfn "\\fn", \ref cmdproperty "\\property", and
               \ref cmdvar "\\var".
@@ -966,7 +968,7 @@ Structural indicators
   \addindex \\var
   Indicates that a comment block contains documentation for a variable or
   enum value (either global or as a member of a class).
-  This command is equivalent to \\typedef, \\propery, and \\fn.
+  This command is equivalent to \\typedef, \\property, and \\fn.
 
   \sa section \ref cmdfn "\\fn", \ref cmdproperty "\\property", and \ref cmdtypedef "\\typedef".
 
@@ -1159,7 +1161,7 @@ contains \c TEST, or \c DEV
   expected life span, etc.
 
 <hr>
-\section cmddetails \\details { detailed decription }
+\section cmddetails \\details { detailed description }
 
   \addindex \\details
   Just like \ref cmdbrief "\\brief" starts a brief description, \\details
@@ -1385,6 +1387,18 @@ void memcpy(void *dest, const void *src, size_t n);
   sectioning command is encountered. See section \ref cmdfn "\\fn" for an
   example.
 
+  Note that you can also document multiple parameters with a single
+  \\param command using a comma separated list. Here is an example:
+
+\code
+/** Sets the position.
+ *  @param x,y,z Coordinates of the position in 3D space.
+ */
+void setPosition(double x,double y,double z,double t)
+{
+}
+\endcode
+
   Note that for PHP one can also specify the type (or types if you
   separate them with a pipe symbol) which are allowed for a parameter
   (as this is not part of the definition).
@@ -1762,6 +1776,17 @@ Make sure you have first read \ref intro "the introduction".
 */
 \endverbatim
 
+<hr>
+\section cmdtableofcontents \\tableofcontents
+
+  \addindex \\tableofcontents
+  Creates a table of contents at the top of a page, listing all
+  sections and subsections in the page. 
+
+  \warning This command only works inside related page documentation and
+           \e not in other documentation blocks and only has effect in the
+           HTML output!
+
 <hr>
 \section cmdsection \\section <section-name> (section title)
 
@@ -2806,6 +2831,15 @@ class Receiver
   character has to be escaped in some cases, because it is used in pairs
   to indicate an unformatted text fragment.
 
+<hr>
+\section cmdchardot \\.
+
+  \addindex \\\.
+  This command writes a dot to the output. This can be useful to 
+  prevent ending a brief description when JAVADOC_AUTOBRIEF is enabled
+  or to prevent starting a numbered list when the dot follows a number at
+  the start of a line.
+
 <hr>
 \section cmddcolon \\::
 

doc/config.doc

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 
@@ -16,6 +16,7 @@
  */
 /*! \page config Configuration
 
+\tableofcontents
 \section config_format Format
 
 A configuration file is a free-form ASCII text file with a structure
@@ -45,7 +46,7 @@ file using a <code>\@INCLUDE</code> tag as follows:
 The include file is searched in the current working directory. You can 
 also specify a list of directories that should be searched before looking
 in the current working directory. Do this by putting a <code>\@INCLUDE_PATH</code> tag 
-with these paths before the <code>\@INCLUDE</code> tag, e.g:
+with these paths before the <code>\@INCLUDE</code> tag, e.g.:
 \verbatim
 @INCLUDE_PATH = my_config_dir
 \endverbatim
@@ -274,6 +275,7 @@ followed by the descriptions of the tags grouped by category.
 \refitem cfg_toc_expand TOC_EXPAND
 \refitem cfg_treeview_width TREEVIEW_WIDTH
 \refitem cfg_typedef_hides_struct TYPEDEF_HIDES_STRUCT
+\refitem cfg_uml_limit_num_fields UML_LIMIT_NUM_FIELDS
 \refitem cfg_uml_look UML_LOOK
 \refitem cfg_use_htags USE_HTAGS
 \refitem cfg_use_inline_trees USE_INLINE_TREES
@@ -1181,7 +1183,7 @@ AClass::ANamespace, ANamespace::*Test
  filter if there is a match.  The filters are a list of the form:
  pattern=filter (like `*.cpp=my_cpp_filter`). See \c INPUT_FILTER for further
  info on how filters are used. If \c FILTER_PATTERNS is empty or if
- non of the patterns match the file name, \c INPUT_FILTER is applied.
+ none of the patterns match the file name, \c INPUT_FILTER is applied.
 
 \anchor cfg_filter_source_files
 <dt>\c FILTER_SOURCE_FILES <dd>
@@ -1808,8 +1810,9 @@ and Class Hierarchy pages using a tree view instead of an ordered list.
  (see http://www.mathjax.org) which uses client side Javascript for the 
  rendering instead of using prerendered bitmaps. Use this if you do not 
  have LaTeX installed or if you want to formulas look prettier in the HTML 
- output. When enabled you also need to install MathJax separately and 
- configure the path to it using the \ref cfg_mathjax_relpath "MATHJAX_RELPATH" option.
+ output. When enabled you may also need to install MathJax separately and 
+ configure the path to it using the \ref cfg_mathjax_relpath "MATHJAX_RELPATH" 
+ option.
 
 \anchor cfg_mathjax_relpath
 <dt>\c MATHJAX_RELPATH <dd>
@@ -1819,9 +1822,9 @@ and Class Hierarchy pages using a tree view instead of an ordered list.
  directory should contain the MathJax.js script. For instance, if the mathjax 
  directory is located at the same level as the HTML output directory, then 
  \c MATHJAX_RELPATH should be <code>../mathjax</code>. The default value points to 
- the http://www.mathjax.org site, so you can quickly see the result without installing 
- MathJax, but it is strongly recommended to install a local copy of MathJax 
- before deployment.
+ the MathJax Content Delivery Network so you can quickly see the result without 
+ installing MathJax.  However, it is strongly recommended to install a local 
+ copy of MathJax from http://www.mathjax.org before deployment.
 
 \anchor cfg_mathjax_extensions
 <dt>\c MATHJAX_EXTENSIONS <dd>
@@ -2352,7 +2355,7 @@ The default size is 10pt.
  \addindex CLASS_GRAPH
  If the \c CLASS_GRAPH and \c HAVE_DOT tags are set to \c YES then doxygen
  will generate a graph for each documented class showing the direct and
- indirect inheritance relations. Setting this tag to \c YES will force the
+ indirect inheritance relations. Setting this tag to \c YES will force 
  the \c CLASS_DIAGRAMS tag to NO.
 
 \anchor cfg_collaboration_graph
@@ -2376,6 +2379,18 @@ The default size is 10pt.
  collaboration diagrams in a style similar to the OMG's Unified Modeling
  Language.
 
+\anchor cfg_uml_limit_num_fields
+<dt>\c UML_LIMIT_NUM_FIELDS <dd>
+ \addindex UML_LIMIT_NUM_FIELDS
+ If the \c UML_LOOK tag is enabled, the fields and methods are shown inside 
+ the class node. If there are many fields or methods and many nodes the 
+ graph may become too big to be useful. The \c UML_LIMIT_NUM_FIELDS 
+ threshold limits the number of items for each type to make the size more 
+ managable. Set this to 0 for no limit. Note that the threshold may be 
+ exceeded by 50% before the limit is enforced. So when you set the threshold
+ to 10, up to 15 fields may appear, but if the number exceeds 15, the
+ total amount of fields shown is limited to 10.
+
 \anchor cfg_template_relations
 <dt>\c TEMPLATE_RELATIONS <dd>
  \addindex TEMPLATE_RELATIONS

doc/custcmd.doc

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 
@@ -16,6 +16,8 @@
  */
 /*! \page custcmd Custom Commands
 
+\tableofcontents
+
 Doxygen provides a large number of \ref commands "special commands", 
 \ref xmlcmds "XML commands", and \ref htmlcmds "HTML commands".
 that can be used to enhance or structure the documentation inside a comment block. 

doc/customize.doc

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 
@@ -16,6 +16,8 @@
  */
 /*! \page customize Customizing the output
 
+\tableofcontents
+
 Doxygen provides various levels of customization. 
 The section \ref minor_tweaks "Minor Tweaks" discusses what to 
 do if you want to do minor tweaking to the look and feel of the output. 
@@ -84,7 +86,7 @@ that are disabled by default:
   with \ref cfg_interactive_svg "INTERACTIVE_SVG" while setting 
   \ref cfg_dot_image_format "DOT_IMAGE_FORMAT" to \c svg, will make doxygen
   produce SVG images that will allow the user to zoom and pan (this only
-  happens when th size of the images exceeds a certain size).
+  happens when the size of the images exceeds a certain size).
 
 \subsection minor_tweaks_header_css Header, Footer, and Stylesheet changes
 
@@ -92,7 +94,7 @@ To tweak things like fonts or colors, margins, or other look \& feel
 aspects of the HTML output in detail, you can create a different 
 <a href="http://www.w3schools.com/css/default.asp">cascading style sheet</a>. 
 You can also let doxygen use a custom header and footer for each HTML 
-page it generates, for instance to make the output comform to the style 
+page it generates, for instance to make the output conform to the style 
 used on the rest of your web site.
 
 To do this first run doxygen as follows:
@@ -121,13 +123,17 @@ for more information about the possible meta commands you can use inside
 your custom header.
 
 \note You should not put the style sheet in the HTML output directory. Treat
-it is a source file. Doxygen will copy it for you. 
+it as a source file. Doxygen will copy it for you. 
 
 \note If you use images or other external content in a custom header you
 need to make sure these end up in the HTML output directory yourself,
 for instance by writing a script that runs doxygen can then copies the
 images to the output.
 
+\warning The structure of headers and footers may change after upgrading to
+a newer version of doxygen, so if you are using a custom header or footer, 
+it might not produce valid output anymore after upgrading. 
+
 \section layout Changing the layout of pages
 
 In some cases you may want to change the way the output is structured.

doc/diagrams.doc

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

doc/docblocks.doc

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 
@@ -15,6 +15,7 @@
  *
  */
 /*! \page docblocks Documenting the code
+\tableofcontents
 
 This chapter covers two topics:
 1. How to put comments in your code such that doxygen incorporates them in
@@ -504,7 +505,7 @@ lower then sign). The brief documentation also ends at a line not starting
 with a \c # (hash sign).
 
 Inside doxygen comment blocks all normal doxygen markings are supported.
-The only expections are described in the following two paragraphs.
+The only exceptions are described in the following two paragraphs.
 
 If a doxygen comment block ends with a line containing only
 \c #\\code or \c #\@code all code until a line only containing \c #\\endcode
@@ -560,7 +561,7 @@ Go to the <a href="lists.html">next</a> section or return to the
 
 \section docstructure Anatomy of a comment block
 
-The previous section focussed on how to make the comments in your code known
+The previous section focused on how to make the comments in your code known
 to doxygen, it explained the difference between a brief and a detailed description, and
 the use of structural commands.
 

doc/doxygen.1

@@ -41,6 +41,6 @@ doxygen \fB\-e\fR rtf extensionsFile
 If \fB\-s\fR is specified the comments in the config file will be omitted.
 If configName is omitted `Doxyfile' will be used as a default.
 .SH AUTHOR
-Doxygen version VERSION, Copyright Dimitri van Heesch 1997-2011
+Doxygen version VERSION, Copyright Dimitri van Heesch 1997-2012
 .SH SEE ALSO
 doxywizard(1).

doc/doxygen_manual.css

@@ -822,7 +822,7 @@ dl
         padding: 0 0 0 10px;
 }
 
-dl.note, dl.warning, dl.attention, dl.pre, dl.post, dl.invariant, dl.deprecated, dl.todo, dl.test, dl.bug
+dl.section
 {
         border-left:4px solid;
         padding: 0 0 0 6px;
@@ -863,6 +863,10 @@ dl.bug
         border-color: #C08050;
 }
 
+dl.section dd {
+	margin-bottom: 1em;
+}
+
 #projectlogo
 {
 	text-align: center;
@@ -946,6 +950,54 @@ dl.citelist dd {
         padding:5px 0;
 }
 
+div.toc {
+        padding: 14px 25px;
+        background-color: #F6F6F6;
+        border: 1px solid #DDDDDD;
+        border-radius: 7px 7px 7px 7px;
+        float: right;
+        height: auto;
+        margin: 0 20px 10px 10px;
+        width: 200px;
+}
+
+div.toc li {
+        background: url("bdwn.png") no-repeat scroll 0 5px transparent;
+        font: 10px/1.2 Verdana,DejaVu Sans,Geneva,sans-serif;
+        margin-top: 5px;
+        padding-left: 10px;
+        padding-top: 2px;
+}
+
+div.toc h3 {
+        font: bold 12px/1.2 Arial,FreeSans,sans-serif;
+        border-bottom: 0 none;
+        color: #606060;
+        margin: 0;
+}
+
+div.toc ul {
+        list-style: none outside none;
+        border: medium none;
+        padding: 0px;
+}
+
+div.toc li.level1 {
+        margin-left: 0px;
+}
+
+div.toc li.level2 {
+        margin-left: 15px;
+}
+
+div.toc li.level3 {
+        margin-left: 30px;
+}
+
+div.toc li.level4 {
+        margin-left: 45px;
+}
+
 @media print
 {
   #top { display: none; }

doc/doxygen_manual.tex

@@ -12,7 +12,8 @@
 % Documents produced by Doxygen are derivative works derived from the
 % input used in their production; they are not affected by this license.
 
-\documentclass[a4paper]{book}
+\documentclass{book}
+\usepackage[a4paper,left=2.5cm,right=2.5cm,top=2.5cm,bottom=2.5cm]{geometry}
 \usepackage{makeidx}
 \usepackage{natbib}
 \usepackage{graphicx}

doc/doxygen_usage.doc

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

doc/doxywizard_usage.doc

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 
@@ -28,7 +28,7 @@ The first step is to choose one of the ways to configure doxygen.
 <dl>
 <dt>Wizard<dd>Click this button to quickly configure the most important 
     settings and leave the rest of the options to their defaults.
-<dt>Expert<dd>Click this button to to gain access to the 
+<dt>Expert<dd>Click this button to gain access to the 
     \ref config "full range of configuration options".
 <dt>Load<dd>Click this button to load an existing configuration file 
     from disk.

doc/external.doc

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

doc/faq.doc

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

doc/features.doc

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 
@@ -63,7 +63,7 @@
     the Qt specific signal and slots sections. Extraction of private class 
     members is optional.
 <li>Automatically generates references to documented classes, files, namespaces
-    and members. Documentation of global functions, globals variables, 
+    and members. Documentation of global functions, global variables, 
     typedefs, defines and enumerations is also supported.
 <li>References to base/super classes and inherited/overridden members are 
     generated automatically.

doc/formulas.doc

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

doc/grouping.doc

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

doc/htmlcmds.doc

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 
@@ -123,7 +123,7 @@ The special HTML character entities that are recognized by Doxygen:
 <li><tt>\&rsquo;</tt> right single quotation mark
 <li><tt>\&ldquo;</tt> left double quotation mark
 <li><tt>\&rdquo;</tt> right double quotation mark
-<li><tt>\&ndash;</tt> n-dash (for numeric ranges, eg. 2&ndash;8)
+<li><tt>\&ndash;</tt> n-dash (for numeric ranges, e.g. 2&ndash;8)
 <li><tt>\&mdash;</tt> m-dash (for parenthetical punctuation &mdash; like this)
 <li><tt>\&?uml;</tt>   where ? is one of {A,E,I,O,U,Y,a,e,i,o,u,y}, 
        writes a character with a diaeresis accent (like &auml;).

doc/index.doc

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 
@@ -113,7 +113,7 @@ The third part provides information for developers:
 \addindex license
 \addindex GPL
 
-Copyright © 1997-2011 by 
+Copyright © 1997-2012 by 
 <a href="mailto:dimitri@stack.nl">Dimitri van Heesch</a>.<p>
 
 Permission to use, copy, modify, and distribute this software and its

doc/install.doc

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 
@@ -17,19 +17,11 @@
 /*! \page install Installation
 
 \addindex installation
+\tableofcontents
+
 First go to the 
 <a href="http://www.doxygen.org/download.html">download</a> page
-to get the latest distribution, if you did not have it already.
-
-This section is divided into the following sections:
-<ul>
-<li>\ref install_src_unix  "Compiling from source on UNIX"
-<li>\ref install_bin_unix  "Installing the binaries on UNIX"
-<li>\ref unix_problems "Known compilation problems for UNIX"
-<li>\ref install_src_windows "Compiling from source on Windows"
-<li>\ref install_bin_windows "Installing the binaries on Windows"
-<li>\ref build_tools "Tools used to develop doxygen"
-</ul>
+to get the latest distribution, if you did not downloaded doxygen already.
 
 \section install_src_unix Compiling from source on UNIX
 
@@ -357,7 +349,7 @@ Now you need to add/adjust the following environment variables
 - add <code>c:\\tools\\unxutils\\usr\\local\\wbin;</code> to the start of <code>PATH</code>
 - set <code>BISON_SIMPLE</code> to <code>c:\\tools\\unxutils\\usr\\local\\share\\bison.simple</code>
 
-Download doxygen's source tarball and put it somewhere (e.g use <code>c:\\tools</code>)
+Download doxygen's source tarball and put it somewhere (e.g. use <code>c:\\tools</code>)
 
 Now start a new command shell and type
 \verbatim
@@ -371,7 +363,7 @@ Now your environment is setup to build \c doxygen.
 
 Inside the \c doxygen-x.y.z directory you will find a \c winbuild directory 
 containing a \c Doxygen.sln file. Open this file in Visual Studio. 
-You can now build the Release or Debug flavor of Doxygen and Doxytag by right-clicking
+You can now build the Release or Debug flavor of Doxygen by right-clicking
 the project in the solutions explorer, and selecting Build.
 
 Note that compiling Doxywizard currently requires Qt version 4

doc/language.doc

@@ -23,7 +23,7 @@ text fragments, generated by doxygen, can be produced in languages other
 than English (the default). The output language is chosen through the
 configuration file (with default name and known as Doxyfile).
 
-Currently (version 1.7.5), 39 languages 
+Currently (version 1.7.6.1), 39 languages 
 are supported (sorted alphabetically):
 Afrikaans, Arabic, Armenian, Brazilian Portuguese, Catalan, Chinese,
 Chinese Traditional, Croatian, Czech, Danish, Dutch, English,

doc/markdown.doc

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 
@@ -16,34 +16,7 @@
  */
 /*! \page markdown Markdown support
 
-Table of contents
-- \ref markdown_std
-  - \ref md_para 
-  - \ref md_headers 
-  - \ref md_blockquotes 
-  - \ref md_lists
-  - \ref md_codeblock
-  - \ref md_rulers
-  - \ref md_emphasis 
-  - \ref md_codespan
-  - \ref md_links 
-    - \ref md_inlinelinks 
-    - \ref md_reflinks 
-  - \ref md_images
-  - \ref md_autolink
-- \ref markdown_extra 
-  - \ref md_tables
-  - \ref md_fenced
-  - \ref md_header_id
-- \ref markdown_dox
-  - \ref md_page_header
-  - \ref md_html_blocks
-  - \ref mddox_code_blocks
-  - \ref mddox_code_spans
-  - \ref mddox_lists
-  - \ref mddox_stars
-  - \ref mddox_limits
-- \ref markdown_debug
+[TOC]
 
 [Markdown] support 
 was introduced in doxygen version 1.8.0. It is a plain text formatting
@@ -57,7 +30,7 @@ syntax written by John Gruber, with the following underlying design goal:
 > text-to-HTML filters, the single biggest source of inspiration 
 > for Markdown’s syntax is the format of plain text email.
 
-In the \ref markdown_std "next section" the standard markdown features
+In the \ref markdown_std "next section" the standard Markdown features
 are briefly discussed. The reader is referred to the [Markdown site][markdown]
 for more details.
 
@@ -128,7 +101,7 @@ to avoid false positives, i.e. when writing
     0  if OK\n
     >1 if NOK
 
-the second line will not seen as a block quote.
+the second line will not be seen as a block quote.
 
 \subsection md_lists Lists
 
@@ -315,13 +288,21 @@ Note that doxygen will also produce the links without the angle brackets.
 
 \section markdown_extra Markdown Extensions
 
+\subsection md_toc Table of Contents
+
+Doxygen supports a special link marker `[TOC]` which can be placed in a page
+to produce a table of contents at the start of the page, listing all sections.
+
+Note that using `[TOC]` is the same as using a
+\ref cmdtableofcontents "\\tableofcontents" command.
+
 \subsection md_tables Tables
 
 Of the features defined by "Markdown Extra" is support for
 <a href="http://michelf.com/projects/php-markdown/extra/#table">simple tables</a>:
 
 A table consists of a header line, a separator line, and at least one
-row line. Table columns are separated by the pipe (!) character.
+row line. Table columns are separated by the pipe (|) character.
 
 Here is an example:
 
@@ -360,7 +341,7 @@ fenced code blocks</a>:
 
 A fenced code block does not require indentation, and is
 defined by a pair of "fence lines". Such a line consists of 3 or
-more tile (~) characters on a line. The end of the block should have the
+more tilde (~) characters on a line. The end of the block should have the
 same number of tildes. Here is an example:
 
 
@@ -370,12 +351,13 @@ same number of tildes. Here is an example:
     a one-line code block
     ~~~~~~~~~~~~~~~~~~~~~
 
-The contents of the code block is syntax highlighted.
-The default language is based on the file it was found in
-(i.e. a fenced block in a Python file is assumed to be Python code).
-In case the language is not clear from the context or you want to 
-indicate a specific language you can add the language's extension after
-the opening fence:
+By default the output is the same as for a normal code block.
+
+For languages supported by doxygen you can also make the code block
+appear with syntax highlighting. To do so you need to 
+indicate the typical file extension that corresponds to the 
+programming language after the opening fence. For highlighting according
+to the Python language for instance, you would need to write the following:
 
     ~~~~~~~~~~~~~{.py}
     # A class
@@ -383,26 +365,26 @@ the opening fence:
         pass
     ~~~~~~~~~~~~~
 
-will produce:
+which will produce:
 ~~~~~~~~~~~~~{.py}
 # A class
 class Dummy:
     pass
 ~~~~~~~~~~~~~
 
-and
+and for C you would write:
 
     ~~~~~~~~~~~~~~~{.c}
     int func(int a,int b) { return a*b; }
     ~~~~~~~~~~~~~~~
 
-will produce:
+which will produce:
 
 ~~~~~~~~~~~~~~~{.c}
 int func(int a,int b) { return a*b; }
 ~~~~~~~~~~~~~~~
 
-The curly brances and dot are optional by the way.
+The curly braces and dot are optional by the way.
 
 \subsection md_header_id Header Id Attributes
 
@@ -429,7 +411,7 @@ Note this only works for the headers of level 1 to 4.
 
 \section markdown_dox Doxygen specifics
 
-Even doxygen tries to following the Markdown standard as closely as
+Even though doxygen tries to following the Markdown standard as closely as
 possible, there are couple of deviation and doxygen specifics additions.
 
 \subsection md_page_header Including Markdown files as pages
@@ -479,7 +461,7 @@ and in other sections that need to be processed without changes
 
 \subsection mddox_code_blocks Code Block Indentation
 
-With markdown any block that is indented by 4 spaces (and 8 spaces
+With Markdown any block that is indented by 4 spaces (and 8 spaces
 inside lists) is treated as a code block. This indentation amount
 is absolute, i.e. counting from the start of the line.
 
@@ -580,13 +562,13 @@ To avoid that a stray * or _ matches something many paragraphs later,
 and shows everything in between with emphasis, doxygen limits the scope
 of a * and _ to a single paragraph.
 
-For code span, between the starting and ending backtick only two
+For a code span, between the starting and ending backtick only two
 new lines are allowed. 
 
 Also for links there are limits; the link text, and link title each can
 contain only one new line, the URL may not contain any newlines. 
 
-\section markdown_debug Debugging problems
+\section markdown_debug Debugging of problems
 
 When doxygen parses the source code it first extracts the comments blocks,
 then passes these through the Markdown preprocessor. The output of the

doc/output.doc

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

doc/preprocessing.doc

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 
@@ -47,7 +47,7 @@ Then by default doxygen will feed the following to its parser:
 You can disable all preprocessing by setting 
 \ref cfg_enable_preprocessing "ENABLE_PREPROCESSING" to \c 
 NO in the configuration file. In the case above doxygen will then read
-both statements, i.e:
+both statements, i.e.:
 
 \verbatim
   static CONST_STRING version = "2.xx";

doc/searching.doc

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 
@@ -139,7 +139,7 @@ has its own advantages and disadvantages:
    To enable the help plugin set 
    \ref cfg_generate_eclipsehelp "GENERATE_ECLIPSEHELP" to \c YES,
    and define a unique identifier for your project via
-   \ref cfg_eclipse_doc_id "ECLIPSE_DOC_ID", i.e:
+   \ref cfg_eclipse_doc_id "ECLIPSE_DOC_ID", i.e.:
 \verbatim
    GENERATE_ECLIPSEHELP = YES
    ECLIPSE_DOC_ID       = com.yourcompany.yourproject

doc/starting.doc

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 
@@ -15,6 +15,7 @@
  *
  */
 /*! \page starting Getting started
+\tableofcontents
 
 The executable \c doxygen is the main program that parses the sources and 
 generates the documentation. See section \ref doxygen_usage for more
@@ -196,7 +197,8 @@ The generated \f$\mbox{\LaTeX}\f$ documentation must first be compiled by
 a \f$\mbox{\LaTeX}\f$ compiler (I use a recent teTeX distribution for Linux
 and MacOSX and MikTex for Windows). 
 To simplify the process of compiling the generated
-documentation, \c doxygen writes a \c Makefile into the \c latex directory. 
+documentation, \c doxygen writes a \c Makefile into the \c latex directory
+(on the Windows platform also a \c make.bat batch file is generated). 
 
 The contents and targets in the \c Makefile depend on the setting of
 \ref cfg_use_pdflatex "USE_PDFLATEX". If it is disabled (set to \c NO), then

doc/translator_report.txt

-(1.7.5)
+(1.7.6.1)
 
 Doxygen supports the following 39 languages (sorted alphabetically):
 
@@ -112,6 +112,7 @@ for occurence of the method identifiers:
   QCString trAlphabeticalList()
   QCString trDCOPMethods()
   QCString trDirDependency(const char *)
+  QCString trFuncProtos()
   QCString trFunctionPrototypeDocumentation()
   QCString trGraphicalHierarchy()
   QCString trSearchForIndex()

doc/trouble.doc

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 
@@ -31,7 +31,7 @@
     or unions with the same name in your code. It should not crash however,
     rather it should ignore all of the classes with the same name except one.
 <li>Some commands do not work inside the arguments of other commands.
-    Inside a HTML link (i.e \<a href="..."\>...\<a\>) for instance 
+    Inside a HTML link (i.e. \<a href="..."\>...\<a\>) for instance 
     other commands (including other HTML commands) do not work!
     The sectioning commands are an important exception. 
 <li>Redundant braces can confuse doxygen in some cases. 

doc/xmlcmds.doc

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

examples/page.doc

 /*! \page page1 A documentation page
+  \tableofcontents
   Leading text.
   \section sec An example section
   This page contains the subsections \ref subsection1 and \ref subsection2.

qtools/Doxyfile

@@ -173,7 +173,7 @@ EXT_LINKS_IN_WINDOW    = NO
 FORMULA_FONTSIZE       = 10
 FORMULA_TRANSPARENT    = YES
 USE_MATHJAX            = NO
-MATHJAX_RELPATH        = http://www.mathjax.org/mathjax
+MATHJAX_RELPATH        = http://cdn.mathjax.org/mathjax/latest
 SEARCHENGINE           = YES
 SERVER_BASED_SEARCH    = NO
 #---------------------------------------------------------------------------

src/Makefile.in

@@ -2,7 +2,7 @@
 #
 # 
 #
-# Copyright (C) 1997-2011 by Dimitri van Heesch.
+# Copyright (C) 1997-2012 by Dimitri van Heesch.
 # 
 # Permission to use, copy, modify, and distribute this software and its
 # documentation under the terms of the GNU General Public License is hereby 

src/arguments.cpp

+#include "arguments.h"
+
+/*! the argument list is documented if one of its
+ *  arguments is documented 
+ */
+bool ArgumentList::hasDocumentation() const
+{
+  bool hasDocs=FALSE;
+  ArgumentListIterator ali(*this);
+  Argument *a;
+  for (ali.toFirst();!hasDocs && (a=ali.current());++ali)
+  {
+    hasDocs = a->hasDocumentation(); 
+  }
+  return hasDocs;
+}
+

src/arguments.h

+/******************************************************************************
+ *
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
+ *
+ * Permission to use, copy, modify, and distribute this software and its
+ * documentation under the terms of the GNU General Public License is hereby 
+ * granted. No representations are made about the suitability of this software 
+ * for any purpose. It is provided "as is" without express or implied warranty.
+ * See the GNU General Public License for more details.
+ *
+ * Documents produced by Doxygen are derivative works derived from the
+ * input used in their production; they are not affected by this license.
+ *
+ */
+
+#ifndef ARGUMENTS_H
+#define ARGUMENTS_H
+
+#include "qtbc.h"
+#include <qlist.h>
+
+/*! \brief This class contains the information about the argument of a
+ *         function or template
+ *
+ */
+struct Argument
+{
+  /*! Construct a new argument. */
+  Argument() {}
+  /*! Copy an argument (does a deep copy of all strings). */
+  Argument(const Argument &a) 
+  { 
+    attrib=a.attrib.copy();
+    type=a.type.copy(); 
+    name=a.name.copy(); 
+    defval=a.defval.copy(); 
+    docs=a.docs.copy();
+    array=a.array.copy();
+  }
+  /*! Assignment of an argument (does a deep copy of all strings). */
+  Argument &operator=(const Argument &a)
+  {
+    if (this!=&a)
+    {
+      attrib=a.attrib.copy();
+      type=a.type.copy(); 
+      name=a.name.copy(); 
+      defval=a.defval.copy(); 
+      docs=a.docs.copy();
+      array=a.array.copy();
+    }
+    return *this;
+  }
+  /*! return TRUE if this argument is documentation and the argument has a
+   *  non empty name.
+   */
+  bool hasDocumentation() const 
+  { 
+    return !name.isEmpty() && !docs.isEmpty(); 
+  }
+  
+  QCString attrib;   /*!< Argument's attribute (IDL only) */
+  QCString type;     /*!< Argument's type */
+  QCString canType;  /*!< Cached value of canonical type (after type resolution). Empty initially. */
+  QCString name;     /*!< Argument's name (may be empty) */
+  QCString array;    /*!< Argument's array specifier (may be empty) */
+  QCString defval;   /*!< Argument's default value (may be empty) */
+  QCString docs;     /*!< Argument's documentation (may be empty) */
+};
+
+/*! \brief This class represents an function or template argument list. 
+ *
+ *  This class also stores some information about member that is typically
+ *  put after the argument list, such as wether the member is const, 
+ *  volatile or pure virtual.
+ */
+class ArgumentList : public QList<Argument> 
+{
+  public:
+    /*! Creates an empty argument list */
+    ArgumentList() : QList<Argument>(), 
+                     constSpecifier(FALSE),
+                     volatileSpecifier(FALSE),
+                     pureSpecifier(FALSE)
+                     { setAutoDelete(TRUE); }
+    /*! Destroys the argument list */
+   ~ArgumentList() {}
+    bool hasDocumentation() const;
+    /*! Does the member modify the state of the class? default: FALSE. */
+    bool constSpecifier;
+    /*! Is the member volatile? default: FALSE. */
+    bool volatileSpecifier;
+    /*! Is this a pure virtual member? default: FALSE */
+    bool pureSpecifier;
+};
+
+typedef QListIterator<Argument> ArgumentListIterator;
+
+#endif

src/bufstr.h

@@ -3,7 +3,7 @@
  * 
  *
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

src/cite.cpp

@@ -52,11 +52,16 @@ static QCString getListOfBibFiles(const QCString &sep,bool stripExtension)
   const char *bibdata = citeDataList.first();
   while (bibdata)
   {
+    int i;
     QCString bibFile = bibdata;
     if (stripExtension && bibFile.right(4)==".bib")
     {
       bibFile = bibFile.left(bibFile.length()-4);
     }
+    if (stripExtension && (i=bibFile.findRev('/'))!=-1)
+    {
+      bibFile = bibFile.mid(i+1);
+    }
     if (!bibFile.isEmpty())
     {
       result+=bibFile;

src/classdef.cpp

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 
@@ -38,6 +38,7 @@
 #include "searchindex.h"
 #include "vhdldocgen.h"
 #include "layout.h"
+#include "arguments.h"
 
 //-----------------------------------------------------------------------------
 
@@ -404,14 +405,12 @@ void ClassDef::internalInsertMember(MemberDef *md,
   if (1 /*!isReference()*/) // changed to 1 for showing members of external
                             // classes when HAVE_DOT and UML_LOOK are enabled.
   {
-    static bool extractPrivate = Config_getBool("EXTRACT_PRIVATE");
-
     bool isSimple=FALSE;
 
     /********************************************/
     /* insert member in the declaration section */
     /********************************************/
-    if (md->isRelated() && (extractPrivate || prot!=Private))
+    if (md->isRelated() && protectionLevelVisible(prot))
     {
       addMemberToList(MemberList::related,md,TRUE);
     }
@@ -560,7 +559,7 @@ void ClassDef::internalInsertMember(MemberDef *md,
     /*******************************************************/
     /* insert member in the detailed documentation section */
     /*******************************************************/
-    if ((md->isRelated() && (extractPrivate || prot!=Private)) || md->isFriend())
+    if ((md->isRelated() && protectionLevelVisible(prot)) || md->isFriend())
     {
       addMemberToList(MemberList::relatedMembers,md,FALSE);
     }
@@ -579,23 +578,13 @@ void ClassDef::internalInsertMember(MemberDef *md,
           addMemberToList(MemberList::functionMembers,md,FALSE);
           break;
         case MemberDef::Slot:
-          switch (prot)
-          {
-            case Protected: 
-            case Package: 
-            case Public:    
-              addMemberToList(MemberList::functionMembers,md,FALSE);
-              break;
-            case Private:   
-              if (extractPrivate)
+          if (protectionLevelVisible(prot))
           {
             addMemberToList(MemberList::functionMembers,md,FALSE);
           }
           break;
-          }
-          break;
         default: // any of the other members
-          if (prot!=Private || extractPrivate)
+          if (protectionLevelVisible(prot))
           {
             switch (md->memberType())
             {
@@ -2047,7 +2036,7 @@ void ClassDef::writeDocumentationForInnerClasses(OutputList &ol)
     for (cli.toFirst();(innerCd=cli.current());++cli)
     {
       if (innerCd->isLinkableInProject() && innerCd->templateMaster()==0 &&
-          (innerCd->protection()!=Private || Config_getBool("EXTRACT_PRIVATE")) &&
+          protectionLevelVisible(innerCd->protection()) &&
          !innerCd->isEmbeddedInOuterScope()
          )
       {
@@ -2162,7 +2151,7 @@ void ClassDef::writeMemberList(OutputList &ol)
           memberWritten=TRUE;
         }
         else if (!Config_getBool("HIDE_UNDOC_MEMBERS") && 
-                  (md->protection()!=Private || Config_getBool("EXTRACT_PRIVATE") || md->isFriend()) 
+                  (protectionLevelVisible(md->protection()) || md->isFriend()) 
                 ) // no documentation, 
                   // generate link to the class instead.
         {
@@ -2429,6 +2418,8 @@ void ClassDef::writeDeclaration(OutputList &ol,MemberDef *md,bool inGroup)
       mg->writePlainDeclarations(ol,this,0,0,0);
     }
   }
+  static bool extractPrivate = Config_getBool("EXTRACT_PRIVATE");
+  static bool extractPackage = Config_getBool("EXTRACT_PACKAGE");
 
   writePlainMemberDeclaration(ol,MemberList::pubTypes,inGroup);
   writePlainMemberDeclaration(ol,MemberList::pubMethods,inGroup);
@@ -2446,12 +2437,15 @@ void ClassDef::writeDeclaration(OutputList &ol,MemberDef *md,bool inGroup)
   writePlainMemberDeclaration(ol,MemberList::proSlots,inGroup);
   writePlainMemberDeclaration(ol,MemberList::proStaticMethods,inGroup);
   writePlainMemberDeclaration(ol,MemberList::proStaticAttribs,inGroup);
+  if (extractPackage)
+  {
     writePlainMemberDeclaration(ol,MemberList::pacTypes,inGroup);
     writePlainMemberDeclaration(ol,MemberList::pacMethods,inGroup);
     writePlainMemberDeclaration(ol,MemberList::pacAttribs,inGroup);
     writePlainMemberDeclaration(ol,MemberList::pacStaticMethods,inGroup);
     writePlainMemberDeclaration(ol,MemberList::pacStaticAttribs,inGroup);
-  if (Config_getBool("EXTRACT_PRIVATE"))
+  }
+  if (extractPrivate)
   {
     writePlainMemberDeclaration(ol,MemberList::priTypes,inGroup);
     writePlainMemberDeclaration(ol,MemberList::priMethods,inGroup);
@@ -2467,7 +2461,6 @@ void ClassDef::writeDeclaration(OutputList &ol,MemberDef *md,bool inGroup)
 /*! a link to this class is possible within this project */
 bool ClassDef::isLinkableInProject() const
 { 
-  static bool extractPrivate = Config_getBool("EXTRACT_PRIVATE");
   static bool extractLocal   = Config_getBool("EXTRACT_LOCAL_CLASSES");
   static bool extractStatic  = Config_getBool("EXTRACT_STATIC");
   static bool hideUndoc      = Config_getBool("HIDE_UNDOC_CLASSES");
@@ -2480,7 +2473,7 @@ bool ClassDef::isLinkableInProject() const
     return !name().isEmpty() &&                    /* has a name */
       !isArtificial() && !isHidden() &&            /* not hidden */
       name().find('@')==-1 &&                      /* not anonymous */
-      (m_impl->prot!=Private || extractPrivate) && /* private */
+      protectionLevelVisible(m_impl->prot)      && /* private/internal */
       (!m_impl->isLocal      || extractLocal)   && /* local */
       (hasDocumentation()    || !hideUndoc)     && /* documented */ 
       (!m_impl->isStatic     || extractStatic)  && /* static */
@@ -2505,7 +2498,6 @@ bool ClassDef::isLinkable() const
 bool ClassDef::isVisibleInHierarchy() 
 { 
   static bool allExternals     = Config_getBool("ALLEXTERNALS");
-  static bool extractPrivate   = Config_getBool("EXTRACT_PRIVATE");
   static bool hideUndocClasses = Config_getBool("HIDE_UNDOC_CLASSES");
   static bool extractStatic    = Config_getBool("EXTRACT_STATIC");
 
@@ -2516,7 +2508,7 @@ bool ClassDef::isVisibleInHierarchy()
       // not an artificially introduced class
       !isArtificial() &&
       // and not privately inherited
-      (m_impl->prot!=Private || extractPrivate) &&
+      protectionLevelVisible(m_impl->prot) &&
       // documented or shown anyway or documentation is external 
       (hasDocumentation() || 
        !hideUndocClasses || 
@@ -2587,7 +2579,7 @@ void ClassDef::mergeMembers()
   //static bool optimizeOutputForJava = Config_getBool("OPTIMIZE_OUTPUT_JAVA");
   //static bool vhdlOpt = Config_getBool("OPTIMIZE_OUTPUT_VHDL");
   SrcLangExt lang = getLanguage();
-  QCString sep=getLanguageSpecificSeparator(lang);
+  QCString sep=getLanguageSpecificSeparator(lang,TRUE);
   int sepLen = sep.length();
 
   m_impl->membersMerged=TRUE;

src/classdef.h

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

src/classlist.cpp

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

src/classlist.h

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

src/cmdmapper.cpp

@@ -3,7 +3,7 @@
  * 
  *
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

src/cmdmapper.h

@@ -3,7 +3,7 @@
  * 
  *
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

src/code.h

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

src/code.l

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 
@@ -34,6 +34,7 @@
 #include "util.h"
 #include "membername.h"
 #include "searchindex.h"
+#include "arguments.h"
 
 #define YY_NEVER_INTERACTIVE 1
   
@@ -546,10 +547,10 @@ static void nextCodeLine()
 /*! write a code fragment `text' that may span multiple lines, inserting
  * line numbers for each line.
  */
-static void codifyLines(char *text)
+static void codifyLines(const char *text)
 {
   //printf("codifyLines(%d,\"%s\")\n",g_yyLineNr,text);
-  char *p=text,*sp=p;
+  const char *p=text,*sp=p;
   char c;
   bool done=FALSE;
   while (!done)
@@ -559,8 +560,13 @@ static void codifyLines(char *text)
     if (c=='\n')
     {
       g_yyLineNr++;
-      *(p-1)='\0';
-      g_code->codify(sp);
+      //*(p-1)='\0';
+      int l = p-sp-1;
+      char *tmp = (char*)malloc(l+1);
+      memcpy(tmp,sp,l);
+      tmp[l]='\0';
+      g_code->codify(tmp);
+      free(tmp);
       nextCodeLine();
     }
     else
@@ -874,6 +880,7 @@ static bool getLinkInScope(const QCString &c,  // scope
   if (getDefs(c,m,"()",md,cd,fd,nd,gd,FALSE,g_sourceFileDef,FALSE,g_forceTagReference) && 
       md->isLinkable() && (!varOnly || md->isVariable()))
   {
+    //printf("found it!\n");
     if (g_exampleBlock)
     {
       QCString anchor;
@@ -939,7 +946,7 @@ static bool getLink(const char *className,
   return TRUE;
 }
 
-static void generateClassOrGlobalLink(CodeOutputInterface &ol,char *clName,
+static void generateClassOrGlobalLink(CodeOutputInterface &ol,const char *clName,
                                       bool typeOnly=FALSE,bool varOnly=FALSE)
 {
   int i=0;
@@ -954,6 +961,7 @@ static void generateClassOrGlobalLink(CodeOutputInterface &ol,char *clName,
   {
     className+="-p";
   }
+  className = substitute(className,"\\","::"); // for PHP namespaces
   ClassDef *cd=0,*lcd=0;
   MemberDef *md=0;
   bool isLocal=FALSE;
@@ -1277,7 +1285,18 @@ static void generateMemberLink(CodeOutputInterface &ol,const QCString &varName,
   return;
 }
 
-static void generateFunctionLink(CodeOutputInterface &ol,char *funcName)
+static void generatePHPVariableLink(CodeOutputInterface &ol,const char *varName)
+{
+  QCString name = varName+7; // strip $this->
+  name.prepend("$");
+  //printf("generatePHPVariableLink(%s) name=%s scope=%s\n",varName,name.data(),g_classScope.data());
+  if (!getLink(g_classScope,name,ol,varName))
+  {
+    codifyLines(varName);
+  }
+}
+
+static void generateFunctionLink(CodeOutputInterface &ol,const char *funcName)
 {
   //CodeClassDef *ccd=0;
   ClassDef *ccd=0;
@@ -2105,6 +2124,8 @@ OPERATOR {ARITHOP}|{ASSIGNOP}|{LOGICOP}|{BITOP}
 					}
 <ClassName>{ID}("\\"{ID})*		{ // PHP namespace
                                           g_curClassName=substitute(yytext,"\\","::");
+  					  g_scopeStack.push(CLASSBLOCK);
+					  pushScope(g_curClassName);
 					  addType();
 					  generateClassOrGlobalLink(*g_code,yytext);
 					  BEGIN( ClassVar );
@@ -2204,8 +2225,8 @@ OPERATOR {ARITHOP}|{ASSIGNOP}|{LOGICOP}|{BITOP}
   					  g_code->codify(yytext);
 					  endFontClass();
 					}
-<Bases>{ID}	                        { 
-					  //printf("%s:addBase(%s)\n",g_ccd.name.data(),yytext);
+<Bases>{SEP}?({ID}{SEP})*{ID}           { 
+					  //fprintf(stderr,"%s:addBase(%s)\n",g_curClassName.data(),yytext);
   					  g_curClassBases.inSort(yytext); 
 					  generateClassOrGlobalLink(*g_code,yytext);
 					}
@@ -2421,6 +2442,11 @@ OPERATOR {ARITHOP}|{ASSIGNOP}|{LOGICOP}|{BITOP}
                                           g_lastTemplCastContext = YY_START;
 					  BEGIN(TemplCast);
 					}
+<Body>"$this->"{SCOPENAME}/{BN}*[;,)\]] { // PHP member variable
+					  addType();
+					  generatePHPVariableLink(*g_code,yytext);
+  					  g_name+=yytext+7; 
+                                        }
 <Body,TemplCast>{SCOPENAME}{B}*"<"[^\n\/\-\.\{\"\>]*">"("::"{ID})*/{B}* { // A<T> *pt;
 					  int i=QCString(yytext).find('<');
 					  QCString kw = QCString(yytext).left(i).stripWhiteSpace();

src/commentcnv.h

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

src/commentcnv.l

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

src/commentscan.h

 /******************************************************************************
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

src/commentscan.l

 /*****************************************************************************
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 
@@ -109,6 +109,7 @@ static bool handleProtected(const QCString &);
 static bool handleProtectedSection(const QCString &);
 static bool handlePublic(const QCString &s);
 static bool handlePublicSection(const QCString &s);
+static bool handleToc(const QCString &s);
 static bool handleInherit(const QCString &);
 static bool handleExtends(const QCString &);
 static bool handleCopyDoc(const QCString &);
@@ -203,6 +204,7 @@ static DocCmdMap docCmdMap[] =
   { "protectedsection",&handleProtectedSection, FALSE },
   { "public",          &handlePublic,           FALSE },
   { "publicsection",   &handlePublicSection,    FALSE },
+  { "tableofcontents", &handleToc,              FALSE },
   { "inherit",         &handleInherit,          TRUE  },
   { "extends",         &handleExtends,          TRUE  },
   { "implements",      &handleExtends,          TRUE  },
@@ -590,7 +592,7 @@ static QCString addFormula()
     formLabel.sprintf("\\form#%d",f->getId());
   }
   int i;
-  for (i=0;i<formulaNewLines;i++) formLabel+="\\_fakenl"; // add fake newlines to
+  for (i=0;i<formulaNewLines;i++) formLabel+="@_fakenl"; // add fake newlines to
                                                          // keep the warnings 
                                                          // correctly aligned.
   return formLabel;
@@ -2560,6 +2562,16 @@ static bool handlePublicSection(const QCString &)
   return FALSE;
 }
 
+static bool handleToc(const QCString &)
+{
+  if (current->section==Entry::PAGEDOC_SEC || 
+      current->section==Entry::MAINPAGEDOC_SEC)
+  {
+    current->stat=TRUE;  // we 'abuse' stat to pass whether or the TOC is enabled
+  }
+  return FALSE;
+}
+
 static bool handleInherit(const QCString &)
 {
   BEGIN(InheritParam);

src/config.h

@@ -3,7 +3,7 @@
  * 
  *
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

src/config.l

@@ -2,7 +2,7 @@
  *
  * 
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

src/config.xml

@@ -354,6 +354,10 @@ the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
     <option type='bool' id='EXTRACT_PRIVATE' docs='
 If the EXTRACT_PRIVATE tag is set to YES all private members of a class 
 will be included in the documentation. 
+' defval='0'/>
+    <option type='bool' id='EXTRACT_PACKAGE' docs='
+If the EXTRACT_PACKAGE tag is set to YES all members with package or internal
+scope will be included in the documentation. 
 ' defval='0'/>
     <option type='bool' id='EXTRACT_STATIC' docs='
 If the EXTRACT_STATIC tag is set to YES all static members of a file 
@@ -1084,7 +1088,7 @@ Enable the USE_MATHJAX option to render LaTeX formulas using MathJax
 (see http://www.mathjax.org) which uses client side Javascript for the 
 rendering instead of using prerendered bitmaps. Use this if you do not 
 have LaTeX installed or if you want to formulas look prettier in the HTML 
-output. When enabled you also need to install MathJax separately and 
+output. When enabled you may also need to install MathJax separately and 
 configure the path to it using the MATHJAX_RELPATH option.
 ' defval='0'/> 
     <option type='string' id='MATHJAX_RELPATH' docs=' 
@@ -1092,11 +1096,11 @@ When MathJax is enabled you need to specify the location relative to the
 HTML output directory using the MATHJAX_RELPATH option. The destination 
 directory should contain the MathJax.js script. For instance, if the mathjax 
 directory is located at the same level as the HTML output directory, then 
-MATHJAX_RELPATH should be ../mathjax. The default value points to the 
-mathjax.org site, so you can quickly see the result without installing 
-MathJax, but it is strongly recommended to install a local copy of MathJax 
-before deployment.
-' defval='http://www.mathjax.org/mathjax'/>
+MATHJAX_RELPATH should be ../mathjax. The default value points to 
+the MathJax Content Delivery Network so you can quickly see the result without 
+installing MathJax.  However, it is strongly recommended to install a local 
+copy of MathJax from http://www.mathjax.org before deployment.
+' defval='http://cdn.mathjax.org/mathjax/latest'/>
     <option type='list' id='MATHJAX_EXTENSIONS' format='string' docs='
 The MATHJAX_EXTENSIONS tag can be used to specify one or MathJax extension 
 names that should be enabled during MathJax rendering. 
@@ -1493,6 +1497,14 @@ If the UML_LOOK tag is set to YES doxygen will generate inheritance and
 collaboration diagrams in a style similar to the OMG&apos;s Unified Modeling 
 Language. 
 ' defval='0' depends='HAVE_DOT'/>
+    <option type='int' id='UML_LIMIT_NUM_FIELDS' docs='
+If the UML_LOOK tag is enabled, the fields and methods are shown inside 
+the class node. If there are many fields or methods and many nodes the 
+graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS 
+threshold limits the number of items for each type to make the size more 
+managable. Set this to 0 for no limit. Note that the threshold may be 
+exceeded by 50% before the limit is enforced.
+' defval='10' minval='0' maxval='100' depends='HAVE_DOT'/>
     <option type='bool' id='TEMPLATE_RELATIONS' docs='
 If set to YES, the inheritance and collaboration graphs will show the 
 relations between templates and their instances. 

src/configgen.py

 # python script to generate configoptions.cpp from config.xml
 #
-# Copyright (C) 1997-2008 by Dimitri van Heesch.
+# Copyright (C) 1997-2012 by Dimitri van Heesch.
 #
 # Permission to use, copy, modify, and distribute this software and its
 # documentation under the terms of the GNU General Public License is hereby 

src/configoptions.cpp

@@ -499,6 +499,12 @@ void addConfigOptions(Config *cfg)
                  FALSE
                 );
   //----
+  cb = cfg->addBool(
+                 "EXTRACT_PACKAGE",
+                 "If the EXTRACT_PACKAGE tag is set to YES all members with package or internal scope will be included in the documentation.",
+                 FALSE
+                );
+  //----
   cb = cfg->addBool(
                  "EXTRACT_STATIC",
                  "If the EXTRACT_STATIC tag is set to YES all static members of a file\n"
@@ -1596,7 +1602,7 @@ void addConfigOptions(Config *cfg)
                  "(see http://www.mathjax.org) which uses client side Javascript for the\n"
                  "rendering instead of using prerendered bitmaps. Use this if you do not\n"
                  "have LaTeX installed or if you want to formulas look prettier in the HTML\n"
-                 "output. When enabled you also need to install MathJax separately and\n"
+                 "output. When enabled you may also need to install MathJax separately and\n"
                  "configure the path to it using the MATHJAX_RELPATH option.",
                  FALSE
                 );
@@ -1607,12 +1613,13 @@ void addConfigOptions(Config *cfg)
                  "HTML output directory using the MATHJAX_RELPATH option. The destination\n"
                  "directory should contain the MathJax.js script. For instance, if the mathjax\n"
                  "directory is located at the same level as the HTML output directory, then\n"
-                 "MATHJAX_RELPATH should be ../mathjax. The default value points to the\n"
-                 "mathjax.org site, so you can quickly see the result without installing\n"
-                 "MathJax, but it is strongly recommended to install a local copy of MathJax\n"
-                 "before deployment."
+                 "MATHJAX_RELPATH should be ../mathjax. The default value points to\n"
+                 "the MathJax Content Delivery Network so you can quickly see the result without\n"
+                 "installing MathJax.\n"
+                 "However, it is strongly recommended to install a local\n"
+                 "copy of MathJax from http://www.mathjax.org before deployment."
                 );
-  cs->setDefaultValue("http://www.mathjax.org/mathjax");
+  cs->setDefaultValue("http://cdn.mathjax.org/mathjax/latest");
   //----
   cl = cfg->addList(
                  "MATHJAX_EXTENSIONS",
@@ -2260,6 +2267,18 @@ void addConfigOptions(Config *cfg)
                 );
   cb->addDependency("HAVE_DOT");
   //----
+  ci = cfg->addInt(
+                 "UML_LIMIT_NUM_FIELDS",
+                 "If the UML_LOOK tag is enabled, the fields and methods are shown inside\n"
+                 "the class node. If there are many fields or methods and many nodes the\n"
+                 "graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS\n"
+                 "threshold limits the number of items for each type to make the size more\n"
+                 "managable. Set this to 0 for no limit. Note that the threshold may be\n"
+                 "exceeded by 50% before the limit is enforced.",
+                 0,100,10
+                );
+  ci->addDependency("HAVE_DOT");
+  //----
   cb = cfg->addBool(
                  "TEMPLATE_RELATIONS",
                  "If set to YES, the inheritance and collaboration graphs will show the\n"

src/configoptions.h

@@ -3,7 +3,7 @@
  * 
  *
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

src/constexp.h

@@ -3,7 +3,7 @@
  * 
  *
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby 

src/constexp.l

@@ -3,7 +3,7 @@
  * 
  *
  *
- * Copyright (C) 1997-2011 by Dimitri van Heesch.
+ * Copyright (C) 1997-2012 by Dimitri van Heesch.
  *
  * Permission to use, copy, modify, and distribute this software and its
  * documentation under the terms of the GNU General Public License is hereby